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3H5X

Crystal Structure of 2'-amino-2'-deoxy-cytidine-5'-triphosphate bound to Norovirus GII RNA polymerase

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsCLSI BEAMLINE 08ID-1
Synchrotron siteCLSI
Beamline08ID-1
Temperature [K]100
Detector technologyCCD
Collection date2008-02-22
DetectorMARMOSAIC 225 mm CCD
Wavelength(s)0.97934
Spacegroup nameP 21 21 21
Unit cell lengths74.600, 93.700, 96.600
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution19.840 - 1.770
R-factor0.20745
Rwork0.205
R-free0.24578
Structure solution methodFOURIER SYNTHESIS
Starting model (for MR)3bso
RMSD bond length0.008
RMSD bond angle1.074
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER
Refinement softwareREFMAC (5.5.0066)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]20.0001.970
High resolution limit [Å]1.7701.770
Rmerge0.0470.670
Number of reflections65879
<I/σ(I)>21
Completeness [%]98.996.5
Redundancy5.94
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7298160 g/L PEG 8000, 250 g/L Glycerol, 100 mM Tris-Cl, pH 7.0, 50 mM KCl, 4 mM MgCl2, 10 mM MnCl2, 14 mM mercaptoethanol, 1 g/L CHAPS, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystallization Reagents
IDcrystal IDsolution IDreagent nameconcentrationdetails
111PEG 8000
1012Glycerol
1112Tris-HCl
1212KCl
1312MgCl2
1412MnCl2
15122-mercaptoethanol
1612CHAPS
211Glycerol
311Tris-HCl
411KCl
511MgCl2
611MnCl2
7112-mercaptoethanol
811CHAPS
912PEG 8000

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PDB entries from 2024-08-14

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