Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

2YPB

Structure of the SCL:E47 complex bound to DNA

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I02
Synchrotron siteDiamond
BeamlineI02
Temperature [K]100
Detector technologyCCD
DetectorADSC CCD
Spacegroup nameC 2 2 21
Unit cell lengths73.193, 152.882, 55.412
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution42.440 - 2.870
R-factor0.25531
Rwork0.254
R-free0.28828
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2ypa
RMSD bond length0.005
RMSD bond angle0.804
Data reduction softwareHKL-2000
Data scaling softwareSCALEPACK
Phasing softwareMOLREP
Refinement softwareREFMAC (5.5.0109)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]3.0003.000
High resolution limit [Å]2.9002.900
Rmerge0.0800.970
Number of reflections7203
<I/σ(I)>15.61.5
Completeness [%]97.898.5
Redundancy3.83.7
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
165 % (V/V) 2-METHYL-2, 4-PENTANEDIOL (MPD), 40 MM MAGNESIUM CHLORIDE, 50 MM SODIUM CACODYLATE PH 6.0 AND 2MM GLUTATHIONE

218196

PDB entries from 2024-04-10

PDB statisticsPDBj update infoContact PDBjnumon