2QRV
Structure of Dnmt3a-Dnmt3L C-terminal domain complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 173 |
Detector technology | CCD |
Collection date | 2006-04-06 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 1.0, 0.9792, 0.9785,0.9719 |
Spacegroup name | H 3 |
Unit cell lengths | 401.881, 401.881, 49.689 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 38.900 - 2.890 |
R-factor | 0.259 |
Rwork | 0.259 |
R-free | 0.28100 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2pv0 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.400 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASES |
Refinement software | CNS (1.1) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.000 | 2.990 |
High resolution limit [Å] | 2.890 | 2.890 |
Rmerge | 0.058 | 0.488 |
Number of reflections | 65264 | |
<I/σ(I)> | 14.8 | 1.8 |
Completeness [%] | 100.0 | 92.1 |
Redundancy | 3.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 300 | The final protein solution CONTAINED ~100 TO 133 micro M COMPLEX IN 20 milli M TRIS/HCL, PH 8.0, 100 milli M NACL, 5 % GLYCEROL, AND 0.1 % MERCAPTOETHANOL. Crystals were obtained with the mother liquor containing 2~5 % PEG 3000, 100 mM Tris/HCl, pH 8.0, 5 % glycerol at 16C, VAPOR DIFFUSION, HANGING DROP |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 300 | The final protein solution CONTAINED ~100 TO 133 micro M COMPLEX IN 20 milli M TRIS/HCL, PH 8.0, 100 milli M NACL, 5 % GLYCEROL, AND 0.1 % MERCAPTOETHANOL. Crystals were obtained with the mother liquor containing 2~5 % PEG 3000, 100 mM Tris/HCl, pH 8.0, 5 % glycerol at 16C, VAPOR DIFFUSION, HANGING DROP |