1HZH
CRYSTAL STRUCTURE OF THE INTACT HUMAN IGG B12 WITH BROAD AND POTENT ACTIVITY AGAINST PRIMARY HIV-1 ISOLATES: A TEMPLATE FOR HIV VACCINE DESIGN
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL7-1 |
Synchrotron site | SSRL |
Beamline | BL7-1 |
Temperature [K] | 96 |
Detector technology | IMAGE PLATE |
Collection date | 1999-01-18 |
Detector | MARRESEARCH |
Spacegroup name | H 3 2 |
Unit cell lengths | 271.320, 271.320, 175.180 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 29.650 - 2.700 |
R-factor | 0.225 * |
Rwork | 0.229 |
R-free | 0.27200 * |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1CBV human Fc coordinates (unpublished) |
RMSD bond length | 0.005 * |
RMSD bond angle | 1.200 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | AMoRE |
Refinement software | CNS (0.9) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 29.650 | 2.750 |
High resolution limit [Å] | 2.700 | 2.700 |
Rmerge | 0.072 * | 0.626 * |
Total number of observations | 187712 * | |
Number of reflections | 63686 * | 3113 * |
<I/σ(I)> | 17.6 | 2.4 |
Completeness [%] | 94.4 | 95.5 |
Redundancy | 2.9 | 2.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.2 * | 295.5 | Saphire, E.O., (2001) Acta Crystallogr., D57, 168. * |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 16 (mg/ml) | pH7.2 |
2 | 1 | drop | sodium azide | 0.02 (%) | |
3 | 1 | reservoir | ammonium sulfate | 800 (mM) | |
4 | 1 | reservoir | sodium cacodylate | 100 (mM) | pH6.5 |