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1ORF

The Oligomeric Structure of Human Granzyme A Reveals the Molecular Determinants of Substrate Specificity

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 5.0.3
Synchrotron siteALS
Beamline5.0.3
Temperature [K]100
Detector technologyCCD
Collection date2002-06-02
DetectorADSC QUANTUM 4
Wavelength(s)1
Spacegroup nameC 2 2 21
Unit cell lengths115.034, 145.022, 39.555
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution20.000 - 2.400
R-factor0.19137
Rwork0.191
R-free0.23200

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Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1dst
RMSD bond length0.013
RMSD bond angle1.544

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Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareEPMR
Refinement softwareREFMAC (5.1.24)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]20.0002.490
High resolution limit [Å]2.4002.400
Rmerge0.103

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0.417

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Total number of observations175040

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Number of reflections13373

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Completeness [%]99.0

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94

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Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6

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17

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Tris pH 8.5, PEG 4000, lithium sulfate, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropMES50 (mM)pH6.0
21drop50 (mM)
31dropprotein10 (mg/ml)
41dropD-Phe-Pro-Arg-CMK2.9 (mM)
51reservoirTris0.1 (M)pH8.5
61reservoir0.2 (mM)
71reservoirPEG400013-18 (%(v/v))

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PDB entries from 2024-05-15

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