1ORF
The Oligomeric Structure of Human Granzyme A Reveals the Molecular Determinants of Substrate Specificity
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.3 |
Synchrotron site | ALS |
Beamline | 5.0.3 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2002-06-02 |
Detector | ADSC QUANTUM 4 |
Wavelength(s) | 1 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 115.034, 145.022, 39.555 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 20.000 - 2.400 |
R-factor | 0.19137 |
Rwork | 0.191 |
R-free | 0.23200 * |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1dst |
RMSD bond length | 0.013 |
RMSD bond angle | 1.544 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | EPMR |
Refinement software | REFMAC (5.1.24) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 20.000 | 2.490 |
High resolution limit [Å] | 2.400 | 2.400 |
Rmerge | 0.103 * | 0.417 * |
Total number of observations | 175040 * | |
Number of reflections | 13373 * | |
Completeness [%] | 99.0 * | 94 * |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 * | 17 * | Tris pH 8.5, PEG 4000, lithium sulfate, VAPOR DIFFUSION, HANGING DROP, temperature 298K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | MES | 50 (mM) | pH6.0 |
2 | 1 | drop | 50 (mM) | ||
3 | 1 | drop | protein | 10 (mg/ml) | |
4 | 1 | drop | D-Phe-Pro-Arg-CMK | 2.9 (mM) | |
5 | 1 | reservoir | Tris | 0.1 (M) | pH8.5 |
6 | 1 | reservoir | 0.2 (mM) | ||
7 | 1 | reservoir | PEG4000 | 13-18 (%(v/v)) |