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更新された PDB エントリー
5TQW
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BU of 5tqw by Molmil
CryoEM reconstruction of human IKK1, open conformation 1
分子名称: Inhibitor of nuclear factor kappa-B kinase subunit alpha
著者Lyumkis, D, Ghosh, G, Polley, S, Biswas, T, Huang, D, Passos, D.O.
登録日2016-10-24
公開日2016-11-09
最終更新日2026-02-25
実験手法ELECTRON MICROSCOPY (5.6 Å)
主引用文献Structural Basis for the Activation of IKK1/ alpha.
Cell Rep, 17, 2016
5TQX
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BU of 5tqx by Molmil
CryoEM reconstruction of human IKK1, intermediate conformation 2
分子名称: Inhibitor of nuclear factor kappa-B kinase subunit alpha
著者Lyumkis, D, Ghosh, G, Polley, S, Biswas, T, Huang, D, Passos, D.O.
登録日2016-10-24
公開日2016-11-09
最終更新日2026-02-25
実験手法ELECTRON MICROSCOPY (5.4 Å)
主引用文献Structural Basis for the Activation of IKK1/ alpha.
Cell Rep, 17, 2016
5TQY
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BU of 5tqy by Molmil
CryoEM reconstruction of human IKK1, closed conformation 3
分子名称: Inhibitor of nuclear factor kappa-B kinase subunit alpha
著者Lyumkis, D, Ghosh, G, Polley, S, Biswas, T, Huang, D, Passos, D.O.
登録日2016-10-24
公開日2016-11-09
最終更新日2026-02-25
実験手法ELECTRON MICROSCOPY (5.2 Å)
主引用文献Structural Basis for the Activation of IKK1/ alpha.
Cell Rep, 17, 2016
5TVL
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BU of 5tvl by Molmil
Crystal structure of foldase protein PrsA from Streptococcus pneumoniae str. Canada MDR_19A
分子名称: CHLORIDE ION, Foldase protein PrsA, GLYCEROL, ...
著者Borek, D, Yim, V, Kudritska, M, Wawrzak, Z, Stogios, P.J, Otwinowski, Z, Savchenko, A, Anderson, W, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2016-11-09
公開日2016-11-23
最終更新日2026-02-25
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Structural analysis of extracellular ATP-independent chaperones of streptococcal species and protein substrate interactions.
Msphere, 10, 2025
5VGC
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BU of 5vgc by Molmil
Crystal structure of the NleG5-1 effector (C200A) from Escherichia coli O157:H7 str. Sakai
分子名称: CALCIUM ION, CHLORIDE ION, GLYCEROL, ...
著者Borek, D, Valleau, D, Skarina, T, Jobin, M.C, Wawrzak, Z, Anderson, W.F, Savchenko, A, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2017-04-10
公開日2018-04-18
最終更新日2026-02-25
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Functional diversification of the NleG effector family in enterohemorrhagic Escherichia coli.
Proc.Natl.Acad.Sci.USA, 115, 2018
6K4I
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BU of 6k4i by Molmil
The partially disordered conformation of ubiquitin (Q41N variant)
分子名称: ubiquitin
著者Wakamoto, T, Ikeya, T, Kitazawa, S, Baxter, N.J, Williamson, M.P, Kitahara, R.
登録日2019-05-24
公開日2019-10-30
最終更新日2026-02-25
実験手法SOLUTION NMR
主引用文献Paramagnetic relaxation enhancement-assisted structural characterization of a partially disordered conformation of ubiquitin.
Protein Sci., 28, 2019
6OKZ
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BU of 6okz by Molmil
Structure of VcINDY bound to Fumarate
分子名称: FUMARIC ACID, SODIUM ION, Transporter, ...
著者Sauer, D.B, Marden, J, Wang, D.N.
登録日2019-04-15
公開日2020-10-28
最終更新日2026-02-25
実験手法X-RAY DIFFRACTION (3.292 Å)
主引用文献Elevator mechanism dynamics in a sodium-coupled dicarboxylate transporter.
Proc.Natl.Acad.Sci.USA, 123, 2026
6OL0
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BU of 6ol0 by Molmil
Structure of VcINDY bound to Malate
分子名称: (2S)-2-hydroxybutanedioic acid, SODIUM ION, Transporter, ...
著者Sauer, D.B, Marden, J.J, Wang, D.N.
登録日2019-04-15
公開日2020-10-28
最終更新日2026-02-25
実験手法X-RAY DIFFRACTION (3.502 Å)
主引用文献Elevator mechanism dynamics in a sodium-coupled dicarboxylate transporter.
Proc.Natl.Acad.Sci.USA, 123, 2026
6OL1
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BU of 6ol1 by Molmil
Structure of VcINDY in complex with Succinate
分子名称: SODIUM ION, SUCCINIC ACID, Transporter, ...
著者Sauer, D.B, Marden, J.J, Wang, D.N.
登録日2019-04-15
公開日2020-10-28
最終更新日2026-02-25
実験手法X-RAY DIFFRACTION (3.088 Å)
主引用文献Elevator mechanism dynamics in a sodium-coupled dicarboxylate transporter.
Proc.Natl.Acad.Sci.USA, 123, 2026
6SG2
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BU of 6sg2 by Molmil
FeFe Hydrogenase from Nitratidesulfovibrio vulgaris in Hinact state
分子名称: HydB, IRON/SULFUR CLUSTER, Periplasmic [Fe] hydrogenase large subunit, ...
著者Galle, L.M, Span, I.
登録日2019-08-02
公開日2020-07-08
最終更新日2026-02-25
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Caught in the H inact : Crystal Structure and Spectroscopy Reveal a Sulfur Bound to the Active Site of an O 2 -stable State of [FeFe] Hydrogenase.
Angew.Chem.Int.Ed.Engl., 59, 2020
6UQF
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BU of 6uqf by Molmil
Human HCN1 channel in a hyperpolarized conformation
分子名称: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, MERCURY (II) ION, Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1
著者Lee, C.-H, MacKinnon, R.
登録日2019-10-19
公開日2019-12-11
最終更新日2026-02-25
実験手法ELECTRON MICROSCOPY (3.04 Å)
主引用文献Voltage Sensor Movements during Hyperpolarization in the HCN Channel.
Cell, 179, 2019
7QVD
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BU of 7qvd by Molmil
X-ray structure of the lytic transglycosylase SltB2 from Pseudomonas aeruginosa
分子名称: CALCIUM ION, Lytic murein transglycosylase
著者Batuecas, M.T, Miguel-Ruano, V, Hermoso, J.A.
登録日2022-01-21
公開日2023-08-16
最終更新日2026-02-25
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural Characterization of Lytic Transglycosylase SltB2 of Pseudomonas aeruginosa.
Acs Omega, 10, 2025
7UUJ
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BU of 7uuj by Molmil
Crystal structure of aminoglycoside resistance enzyme ApmA, complex with gentamicin
分子名称: (2R,3R,4R,5R)-2-((1S,2S,3R,4S,6R)-4,6-DIAMINO-3-((2R,3R,6S)-3-AMINO-6-(AMINOMETHYL)-TETRAHYDRO-2H-PYRAN-2-YLOXY)-2-HYDR OXYCYCLOHEXYLOXY)-5-METHYL-4-(METHYLAMINO)-TETRAHYDRO-2H-PYRAN-3,5-DIOL, 1,2-ETHANEDIOL, Aminocyclitol acetyltransferase ApmA, ...
著者Stogios, P.J, Evdokimova, E, Osipiuk, J, Di Leo, R, Bordeleau, E, Wright, G.D, Savchenko, A, Joachimiak, A, Satchell, K.J.F, Center for Structural Biology of Infectious Diseases (CSBID)
登録日2022-04-28
公開日2023-04-19
最終更新日2026-02-25
実験手法X-RAY DIFFRACTION (1.78 Å)
主引用文献Mechanistic plasticity in ApmA enables aminoglycoside promiscuity for resistance
Nat.Chem.Biol., 20, 2024
7UUK
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Crystal structure of aminoglycoside resistance enzyme ApmA, complex with tobramycin
分子名称: Aminocyclitol acetyltransferase ApmA, CHLORIDE ION, TOBRAMYCIN
著者Stogios, P.J, Evdokimova, E, Di Leo, R, Bordeleau, E, Wright, G.D, Savchenko, A, Joachimiak, A, Satchell, K.J.F, Center for Structural Biology of Infectious Diseases (CSBID)
登録日2022-04-28
公開日2023-04-19
最終更新日2026-02-25
実験手法X-RAY DIFFRACTION (2.82 Å)
主引用文献Mechanistic plasticity in ApmA enables aminoglycoside promiscuity for resistance
Nat.Chem.Biol., 20, 2024
7UUL
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Crystal structure of aminoglycoside resistance enzyme ApmA, complex with kanamycin B and coenzyme A
分子名称: (1R,2S,3S,4R,6S)-4,6-DIAMINO-3-[(3-AMINO-3-DEOXY-ALPHA-D-GLUCOPYRANOSYL)OXY]-2-HYDROXYCYCLOHEXYL 2,6-DIAMINO-2,6-DIDEOXY-ALPHA-D-GLUCOPYRANOSIDE, 1,2-ETHANEDIOL, Aminocyclitol acetyltransferase ApmA, ...
著者Stogios, P.J, Evdokimova, E, Di Leo, R, Bordeleau, E, Wright, G.D, Savchenko, A, Joachimiak, A, Satchell, K.J.F, Center for Structural Genomics of Infectious Diseases (CSGID), Center for Structural Biology of Infectious Diseases (CSBID)
登録日2022-04-28
公開日2022-11-02
最終更新日2026-02-25
実験手法X-RAY DIFFRACTION (2.26 Å)
主引用文献Mechanistic plasticity in ApmA enables aminoglycoside promiscuity for resistance
Nat.Chem.Biol., 20, 2024
7UUM
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BU of 7uum by Molmil
Crystal structure of aminoglycoside resistance enzyme ApmA, complex with paromomycin and coenzyme A
分子名称: Aminocyclitol acetyltransferase ApmA, COENZYME A, GLYCEROL, ...
著者Stogios, P.J, Evdokimova, E, Osipiuk, J, Di Leo, R, Bordeleau, E, Wright, G.D, Savchenko, A, Joachimiak, A, Satchell, K.J.F, Center for Structural Genomics of Infectious Diseases (CSGID), Center for Structural Biology of Infectious Diseases (CSBID)
登録日2022-04-28
公開日2022-11-02
最終更新日2026-02-25
実験手法X-RAY DIFFRACTION (2.74 Å)
主引用文献Mechanistic plasticity in ApmA enables aminoglycoside promiscuity for resistance
Nat.Chem.Biol., 20, 2024
7UUN
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Crystal structure of aminoglycoside resistance enzyme ApmA, complex with neomycin
分子名称: 1,2-ETHANEDIOL, Aminocyclitol acetyltransferase ApmA, NEOMYCIN
著者Stogios, P.J, Evdokimova, E, Di Leo, R, Osipiuk, J, Bordeleau, E, Wright, G.D, Savchenko, A, Joachimiak, A, Satchell, K.J.F, Center for Structural Genomics of Infectious Diseases (CSGID), Center for Structural Biology of Infectious Diseases (CSBID)
登録日2022-04-28
公開日2022-11-02
最終更新日2026-02-25
実験手法X-RAY DIFFRACTION (2.83 Å)
主引用文献Mechanistic plasticity in ApmA enables aminoglycoside promiscuity for resistance
Nat.Chem.Biol., 20, 2024
7UUO
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BU of 7uuo by Molmil
Crystal structure of aminoglycoside resistance enzyme ApmA H135A mutant, complex with tobramycin and coenzyme A
分子名称: 1,2-ETHANEDIOL, Aminocyclitol acetyltransferase ApmA, COENZYME A, ...
著者Stogios, P.J, Evdokimova, E, Michalska, K, Di Leo, R, Bordeleau, E, Wright, G.D, Savchenko, A, Joachimiak, A, Satchell, K.J.F, Center for Structural Genomics of Infectious Diseases (CSGID), Center for Structural Biology of Infectious Diseases (CSBID)
登録日2022-04-28
公開日2022-11-02
最終更新日2026-02-25
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Mechanistic plasticity in ApmA enables aminoglycoside promiscuity for resistance
Nat.Chem.Biol., 20, 2024
8BA7
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BU of 8ba7 by Molmil
CryoEM structure of nucleotide-free GroEL-Rubisco.
分子名称: Chaperonin GroEL
著者Gardner, S, Saibil, H.R.
登録日2022-10-11
公開日2023-10-25
最終更新日2026-02-25
実験手法ELECTRON MICROSCOPY (4.4 Å)
主引用文献Structural basis of substrate progression through the bacterial chaperonin cycle.
Proc.Natl.Acad.Sci.USA, 120, 2023
8BA8
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CryoEM structure of GroEL-ADP.BeF3-Rubisco.
分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Chaperonin GroEL, ...
著者Gardner, S, Saibil, H.R.
登録日2022-10-11
公開日2023-12-27
最終更新日2026-02-25
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Structural basis of substrate progression through the bacterial chaperonin cycle.
Proc.Natl.Acad.Sci.USA, 120, 2023
8BA9
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BU of 8ba9 by Molmil
CryoEM structure of GroEL-GroES-ADP.AlF3-Rubisco.
分子名称: 60 kDa chaperonin, ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, ...
著者Gardner, S, Saibil, H.R.
登録日2022-10-11
公開日2023-12-27
最終更新日2026-02-25
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Structural basis of substrate progression through the bacterial chaperonin cycle.
Proc.Natl.Acad.Sci.USA, 120, 2023
8BAA
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BU of 8baa by Molmil
CryoEM structure of GroEL-GroES-ADP.AlF3-Rubisco, class II.
分子名称: ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, Chaperonin GroEL, ...
著者Gardner, S, Saibil, H.R.
登録日2022-10-11
公開日2025-02-12
最終更新日2026-02-25
実験手法ELECTRON MICROSCOPY (4.2 Å)
主引用文献Structural basis of substrate progression through the bacterial chaperonin cycle.
Proc.Natl.Acad.Sci.USA, 120, 2023
8BJ7
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BU of 8bj7 by Molmil
Nitratidesulfovibrio vulgaris FeFe Hydrogenase C178A mutant in Hinact-like state
分子名称: Binuclear [FeFe], di(thiomethyl)amine, carbon monoxide, ...
著者Bikbaev, K, Span, I.
登録日2022-11-03
公開日2023-03-22
最終更新日2026-02-25
実験手法X-RAY DIFFRACTION (1.04 Å)
主引用文献Binding of exogenous cyanide reveals new active-site states in [FeFe] hydrogenases.
Chem Sci, 14, 2023
8BJ8
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Nitratidesulfovibrio vulgaris FeFe Hydrogenase C178A mutant in Htrans-like state
分子名称: Binuclear [FeFe], di(thiomethyl)amine, carbon monoxide, ...
著者Bikbaev, K, Span, I.
登録日2022-11-03
公開日2023-04-26
最終更新日2026-02-25
実験手法X-RAY DIFFRACTION (1.01 Å)
主引用文献Binding of exogenous cyanide reveals new active-site states in [FeFe] hydrogenases.
Chem Sci, 14, 2023
8EZR
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BU of 8ezr by Molmil
Crystal structure of the HipS(Lp)-HipT(Lp) complex from Legionella pneumophila, native protein
分子名称: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, HipS(Lp), ...
著者Stogios, P.J, Skarina, T, Michalska, K, Di Leo, R, Lin, J, Ensminger, A, Savchenko, A, Joachimiak, A, Satchell, K.J.F, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2022-11-01
公開日2023-09-27
最終更新日2026-02-25
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Functional diversification despite structural congruence in the HipBST toxin-antitoxin system of Legionella pneumophila.
Mbio, 14, 2023

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