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X線構造因子データを含む新しいPDBエントリー
8Z79
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Crystal structure of 5-N-alpha-glycinylthymidine (N-alpha-GlyT) FAD-dependent lyase gp47/NGTO from Pseudomonas phage PaMx11 in complex with dsDNA
分子名称: DNA (5'-D(*TP*AP*GP*TP*CP*AP*TP*GP*AP*CP*T)-3'), FLAVIN-ADENINE DINUCLEOTIDE, Flavin-dependent lyase
著者Wen, Y, Guo, W.T, Wu, B.X.
登録日2024-04-19
公開日2024-10-02
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Structural insights into the biosynthetic mechanism of N alpha-GlyT and 5-NmdU hypermodifications of DNA.
Nucleic Acids Res., 2024
8ZEM
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Crystal Structure of NLRP3 NACHT domain in complex with NP3-1
分子名称: 1-[5-[2,3-bis(chloranyl)phenyl]-2,3-dihydro-1~{H}-inden-4-yl]-3-[4-(2-oxidanylpropan-2-yl)thiophen-2-yl]sulfonyl-urea, ADENOSINE-5'-DIPHOSPHATE, NACHT, ...
著者Shi, C, Liu, Z.M.
登録日2024-05-06
公開日2024-10-02
実験手法X-RAY DIFFRACTION (3.32 Å)
主引用文献Deep-Learning-Driven Discovery of SN3-1, a Potent NLRP3 Inhibitor with Therapeutic Potential for Inflammatory Diseases.
J.Med.Chem., 2024
8ZQA
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Crystal structure of 1,4-alpha-glucan branching protein from Rhodothermus profundi
分子名称: 1,4-alpha-glucan branching enzyme GlgB
著者Li, Q, Zong, Z.Y, Liu, W.D.
登録日2024-06-01
公開日2024-10-02
実験手法X-RAY DIFFRACTION (2.91 Å)
主引用文献Crystal structure of 1,4-alpha-glucan branching protein from Rhodothermus profundi
To Be Published
8ZVG
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Crystal structure of AetD in complex with L-tyrosine
分子名称: AetD, FE (II) ION, NICKEL (II) ION, ...
著者Li, H, Dai, L, Zheng, H.B, Chen, C.-C, Guo, R.-T.
登録日2024-06-11
公開日2024-10-02
実験手法X-RAY DIFFRACTION (1.89 Å)
主引用文献Structural and molecular insights of two unique enzymes involved in the biosynthesis of a natural halogenated nitrile.
Febs J., 2024
8ZVH
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Crystal structure of AetD in complex with L-phenylalanine
分子名称: AetD, FE (II) ION, NICKEL (II) ION, ...
著者Li, H, Dai, L, Zheng, H.B, Chen, C.-C, Guo, R.-T.
登録日2024-06-11
公開日2024-10-02
実験手法X-RAY DIFFRACTION (1.87 Å)
主引用文献Structural and molecular insights of two unique enzymes involved in the biosynthesis of a natural halogenated nitrile.
Febs J., 2024
9AXN
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Crystal Structure of Anti-Fentanyl Antibody HY11-6B2_Mu Fab in Complex with Fentanyl
分子名称: 1,2-ETHANEDIOL, HY11-6B2_Mu Fab Heavy Chain, HY11-6B2_Mu Fab Light Chain, ...
著者Rodarte, J.V, Pancera, M.
登録日2024-03-06
公開日2024-10-02
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structure-based engineering of monoclonal antibodies against fentanyl and carfentanil for improved binding
To Be Published
9AXO
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Crystal Structure of Antibody HY11-7E1_Ch2 Fab in Complex with Fentanyl
分子名称: GLYCEROL, HY11-7E1_Ch2 Fab Heavy Chain, HY11-7E1_Ch2 Fab Light Chain, ...
著者Rodarte, J.V, Pancera, M.
登録日2024-03-06
公開日2024-10-02
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structure-based engineering of monoclonal antibodies against fentanyl and carfentanil for improved binding
To Be Published
9AXP
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Crystal Structure of HY11-7E1_Hu3 Fab in Complex with Carfentanil
分子名称: ACETATE ION, HY11-7E1_Hu3 Fab Heavy Chain, HY11-7E1_Hu3 Fab Light Chain, ...
著者Rodarte, J.V, Pancera, M.
登録日2024-03-06
公開日2024-10-02
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structure-based engineering of monoclonal antibodies against fentanyl and carfentanil for improved binding
To Be Published
9AXQ
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Crystal Structure of HY11-7E1_Hu3 Fab in the Apo Conformation
分子名称: ACETATE ION, HY11-7E1_Hu3 Fab Heavy Chain, HY11-7E1_Hu3 Fab Light Chain, ...
著者Rodarte, J.V, Pancera, M, Hannon, B.
登録日2024-03-06
公開日2024-10-02
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structure-based engineering of monoclonal antibodies against fentanyl and carfentanil for improved binding
To Be Published
9AXR
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Crystal Structure of HY18-5B1_Ch Fab in Complex with Fentanyl
分子名称: HY18-5B1_Ch Fab Heavy Chain, HY18-5B1_Ch Fab Light Chain, N-phenyl-N-[1-(2-phenylethyl)piperidin-4-yl]propanamide
著者McGovern, M.R, Rodarte, J.V, Pancera, M.
登録日2024-03-06
公開日2024-10-02
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Structure-based engineering of monoclonal antibodies against fentanyl and carfentanil for improved binding
To Be Published
9AXS
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Crystal Structure of HY18-5B1_Ch Fab in the Apo Conformation
分子名称: GLYCEROL, HY18-5B1_Ch Fab Heavy Chain, HY18-5B1_Ch Fab Light Chain
著者McGovern, M.R, Rodarte, J.V, Pancera, M.
登録日2024-03-06
公開日2024-10-02
実験手法X-RAY DIFFRACTION (2.04 Å)
主引用文献Structure-based engineering of monoclonal antibodies against fentanyl and carfentanil for improved binding
To Be Published
9BI8
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Crystal structure of inhibitor GNE-6893 bound to HPK1
分子名称: (3R,4S)-4-methyloxolan-3-yl [(6P)-8-amino-7-fluoro-6-(8-methyl-2,3-dihydro-1H-pyrido[2,3-b][1,4]oxazin-7-yl)isoquinolin-3-yl]carbamate, DIMETHYL SULFOXIDE, Mitogen-activated protein kinase kinase kinase kinase 1, ...
著者Kiefer, J.R, Tellis, J.C, Chan, B.K, Wang, W, Wu, P, Choo, E.F, Heffron, T.P, Wei, B, Siu, M.
登録日2024-04-22
公開日2024-10-02
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Discovery of GNE-6893, a Potent, Selective, Orally Bioavailable Small Molecule Inhibitor of HPK1.
Acs Med.Chem.Lett., 15, 2024
9BIG
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BU of 9big by Molmil
Stat6 bound to degrader AK-1690
分子名称: Signal transducer and activator of transcription 6, [(2-{[(2S)-1-{(2S,4S)-4-[(7-{2-[(3R)-2,6-dioxopiperidin-3-yl]-1-oxo-2,3-dihydro-1H-isoindol-4-yl}hept-6-yn-1-yl)oxy]-2-[(2R)-2-phenylmorpholine-4-carbonyl]pyrrolidin-1-yl}-3,3-dimethyl-1-oxobutan-2-yl]carbamoyl}-1-benzothiophen-5-yl)di(fluoro)methyl]phosphonic acid
著者Mallik, L, Stuckey, J.A.
登録日2024-04-23
公開日2024-10-02
実験手法X-RAY DIFFRACTION (3.304 Å)
主引用文献Discovery of AK-1690: A Potent and Highly Selective STAT6 PROTAC Degrader.
J.Med.Chem., 2024
9BIK
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Crystal structure of inhibitor 1 bound to HPK1
分子名称: (1S,2S)-N-[(6P)-8-amino-6-(4-methylpyridin-3-yl)isoquinolin-3-yl]-2-cyanocyclopropane-1-carboxamide, 1,2-ETHANEDIOL, Mitogen-activated protein kinase kinase kinase kinase 1
著者Kiefer, J.T, Tellis, J.C, Chan, B.K, Wang, W, Wu, P, Siu, M, Heffron, T.P, Choo, E.F.
登録日2024-04-23
公開日2024-10-02
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Discovery of GNE-6893, a Potent, Selective, Orally Bioavailable Small Molecule Inhibitor of HPK1.
Acs Med.Chem.Lett., 15, 2024
9BJ1
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Crystal structure of inhibitor GNE-6893 bound to HPK1
分子名称: (4S,5R,7R,11aP)-10-{[(3R)-3-hydroxy-1-methyl-2-oxopyrrolidin-3-yl]ethynyl}-N~3~-methyl-6,7-dihydro-5H-5,7-methanoimidazo[2,1-a][2]benzazepine-2,3-dicarboxamide, (9S)-2-{[(6P)-8-amino-6-(5-amino-4-methylpyridin-3-yl)-7-fluoroisoquinolin-3-yl]amino}-6-methyl-5,6-dihydro-4H-pyrazolo[1,5-d][1,4]diazepin-7(8H)-one, 1,2-ETHANEDIOL, ...
著者Kiefer, J.R, Tellis, J.C, Chan, B.K, Wang, W, Wu, P, Choo, E.F, Heffron, T.P, Wei, B, Siu, M.
登録日2024-04-24
公開日2024-10-02
実験手法X-RAY DIFFRACTION (2.18 Å)
主引用文献Discovery of GNE-6893, a Potent, Selective, Orally Bioavailable Small Molecule Inhibitor of HPK1.
Acs Med.Chem.Lett., 15, 2024
9BVT
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RNA Pol II - High Mn(+2) concentration
分子名称: DNA (5'-D(P*AP*CP*GP*TP*CP*CP*CP*TP*CP*TP*CP*GP*A)-3'), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ...
著者Calero, G.
登録日2024-05-20
公開日2024-10-02
実験手法X-RAY DIFFRACTION (3.4 Å)
主引用文献Structural basis of transcription: RNA polymerase II substrate binding and metal coordination using a free-electron laser.
Proc.Natl.Acad.Sci.USA, 121, 2024
9BW0
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RNA Polymerase II - No ATP
分子名称: DNA (5'-D(P*AP*CP*GP*TP*CP*CP*CP*TP*CP*TP*CP*GP*A)-3'), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ...
著者Calero, G.
登録日2024-05-20
公開日2024-10-02
実験手法X-RAY DIFFRACTION (3.51 Å)
主引用文献Structural basis of transcription: RNA polymerase II substrate binding and metal coordination using a free-electron laser.
Proc.Natl.Acad.Sci.USA, 121, 2024
9C10
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AMG 193, a clinical stage MTA-cooperative PRMT5 inhibitor, drives anti-tumor activity preclinically and in patients with MTAP-deleted cancers
分子名称: (4-amino-1,3-dihydrofuro[3,4-c][1,7]naphthyridin-8-yl){(3S)-3-[4-(trifluoromethyl)phenyl]morpholin-4-yl}methanone, 5'-DEOXY-5'-METHYLTHIOADENOSINE, DIMETHYL SULFOXIDE, ...
著者Ghimire-Rijal, S, Mukund, S.
登録日2024-05-28
公開日2024-10-02
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献AMG 193, a clinical stage MTA-cooperative PRMT5 inhibitor, drives anti-tumor activity preclinically and in patients with MTAP-deleted cancers
To Be Published
9C6L
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Yasminevirus c12orf29, a 5' to 3' RNA ligase
分子名称: ADENOSINE MONOPHOSPHATE, MAGNESIUM ION, RNA ligase1, ...
著者Hu, Y, Lopez, V.A, Tagliabracci, V.S, Tomchick, D.R.
登録日2024-06-07
公開日2024-10-02
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Biochemical and structural insights into a 5' to 3' RNA ligase reveal a potential role in tRNA ligation
To Be Published
9C6M
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Yasminevirus c12orf29, a 5' to 3' RNA ligase, K73M mutant
分子名称: ADENOSINE-5'-TRIPHOSPHATE, RNA ligase1
著者Hu, Y, Lopez, V.A, Tagliabracci, V.S, Tomchick, D.R.
登録日2024-06-07
公開日2024-10-02
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Biochemical and structural insights into a 5' to 3' RNA ligase reveal a potential role in tRNA ligation
To Be Published
9C7A
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Crystal structure of R149W neurodevelopmental disease-associated U2AF2 variant
分子名称: DNA/RNA (5'-R(P*UP*U)-D(P*U)-R(P*UP*U)-D(P*(BRU))-R(P*CP*C)-3'), GLYCEROL, SODIUM ION, ...
著者Maji, D, Jenkins, J.L, Kielkopf, C.L.
登録日2024-06-10
公開日2024-10-02
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Recurrent neurodevelopmentally-associated variants of the pre-mRNA splicing factor U2AF2 alter RNA binding affinities and interactions
To Be Published
9C7B
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Crystal structure of R150H neurodevelopmental disease-associated U2AF2 variant
分子名称: DNA/RNA (5'-R(P*UP*U)-D(P*U)-R(P*UP*U)-D(P*(BRU))-R(P*CP*C)-3'), Splicing factor U2AF 65 kDa subunit
著者Maji, D, Jenkins, J.L, Kielkopf, C.L.
登録日2024-06-10
公開日2024-10-02
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Recurrent neurodevelopmentally-associated variants of the pre-mRNA splicing factor U2AF2 alter RNA binding affinities and interactions
To Be Published
9CM8
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BU of 9cm8 by Molmil
UDP-GlcNAc 2-epimerase MnaA of Paenibacillus alvei
分子名称: DI(HYDROXYETHYL)ETHER, UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)
著者Legg, M.S.G, Mateyko, N, Evans, S.V.
登録日2024-07-13
公開日2024-10-02
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Insights into structure and activity of a UDP-GlcNAc 2-epimerase involved in secondary cell wall polymer biosynthesis in Paenibacillus alvei
Front Mol Biosci, 11, 2024
9CSY
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SARS-CoV-2 papain-like protease (PLpro) bound to PF-07957472
分子名称: 2-methyl-5-(4-methylpiperazin-1-yl)-N-{1-[(2P)-2-(1-methyl-1H-pyrazol-4-yl)quinolin-4-yl]cyclopropyl}benzamide, Papain-like protease, ZINC ION, ...
著者Mashalidis, E.H, Chang, J.S, Wu, H, Garnsey, M.
登録日2024-07-24
公開日2024-10-02
実験手法X-RAY DIFFRACTION (2.595 Å)
主引用文献Discovery of SARS-CoV-2 papain-like protease (PL pro ) inhibitors with efficacy in a murine infection model.
Sci Adv, 10, 2024
9CUW
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Crystal Structure of SETDB1 Tudor domain in complex with UNC100013
分子名称: (2E)-4-(dimethylamino)-N-(4-{[6-(dimethylamino)hexyl]amino}-2-{[5-(dimethylamino)pentyl]amino}quinazolin-6-yl)but-2-enamide, 1,2-ETHANEDIOL, Histone-lysine N-methyltransferase SETDB1, ...
著者Silva, M, Dong, A, Arrowsmith, C.H, Edwards, A.M, Halabelian, L, Structural Genomics Consortium (SGC)
登録日2024-07-26
公開日2024-10-02
実験手法X-RAY DIFFRACTION (1.53 Å)
主引用文献Crystal Structure of SETDB1 Tudor domain in complex with UNC100013
To be published

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件を2024-10-02に公開中

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