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All PDB entries with NMR restraints data
7E4E
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BU of 7e4e by Molmil
NMR solution structures of DNA minidumbbell containing a N1-methyladenine
Descriptor: DNA (5'-D(*TP*TP*TP*(MA7)P*TP*TP*TP*A)-3'), SODIUM ION
Authors:Wan, L, Guo, P, Lam, S.L.
Deposit date:2021-02-11
Release date:2021-04-07
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Effects of Adenine Methylation on the Structure and Thermodynamic Stability of a DNA Minidumbbell.
Int J Mol Sci, 22, 2021
7E5P
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BU of 7e5p by Molmil
Aptamer enhancing peroxidase activity of myoglobin
Descriptor: DNA (5'-D(*GP*GP*GP*TP*GP*GP*GP*TP*TP*GP*GP*GP*AP*GP*GP*G)-3')
Authors:Tsukakoshi, K, Matsugami, A, Khunathai, K, Kanazashi, M, Yamagishi, Y, Nakama, K, Oshikawa, D, Hayashi, F, Kuno, H, Ikebukuro, K.
Deposit date:2021-02-19
Release date:2021-06-16
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:G-quadruplex-forming aptamer enhances the peroxidase activity of myoglobin against luminol.
Nucleic Acids Res., 49, 2021
7EAU
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BU of 7eau by Molmil
SIB1, an effector of Colletotrichum orbiculare
Descriptor: SIN1
Authors:Mori, M, Ohki, S, Kurita, J.
Deposit date:2021-03-08
Release date:2021-11-03
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Fungal effector SIB1 of Colletotrichum orbiculare has unique structural features and can suppress plant immunity in Nicotiana benthamiana.
J.Biol.Chem., 297, 2021
7EB1
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BU of 7eb1 by Molmil
Solution NMR structure of the RRM domain of RNA binding protein RBM3 from homo sapiens
Descriptor: RNA-binding protein 3
Authors:Boral, S, Roy, S, Basak, A.J, Maiti, S, Lee, W, De, S.
Deposit date:2021-03-08
Release date:2021-12-08
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural and dynamic studies of the human RNA binding protein RBM3 reveals the molecular basis of its oligomerization and RNA recognition.
Febs J., 289, 2022
7EDK
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BU of 7edk by Molmil
NMR solution structure of Bt14.12, a novel A-family conotoxin from Conus betulinus
Descriptor: Conotoxin Bt14.16
Authors:Zhang, H, Lin, D, Guo, C.
Deposit date:2021-03-16
Release date:2021-03-31
Last modified:2024-10-30
Method:SOLUTION NMR
Cite:Structure of peptide Bt14.12
To Be Published
7EES
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BU of 7ees by Molmil
NMR structure of the lasso peptide rubrivimycin
Descriptor: GLY-THR-ILE-ASP-PRO-GLN-ASN-SER-GLU-GLU-HIS-PRO-VAL-LEU-SER-ARG-ARG-LEU-GLU-ASN
Authors:Xiu, H, Niu, X, Zhu, S.
Deposit date:2021-03-19
Release date:2022-03-23
Last modified:2024-10-09
Method:SOLUTION NMR
Cite:Insight into the biosynthesis of rubrivimycin provides new clue for the evolution of lasso peptides
To Be Published
7EH3
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BU of 7eh3 by Molmil
Structure of Nanobody Nb23 in solution using NMR spectroscopy
Descriptor: Nb23
Authors:Percipalle, M, Hunashal, Y, Esposito, G, Fogolari, F.
Deposit date:2021-03-28
Release date:2021-07-14
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structure of Nanobody Nb23.
Molecules, 26, 2021
7EL7
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BU of 7el7 by Molmil
NMR solution structure of the 1:1 complex of a quadruplex-duplex hybrid MYT1L and a platinum(II) ligand L1Pt(dien)
Descriptor: G-quadruplex DNA MYT1L, Pt(diethylenetriamine)(2-(pyridin-4-ylmethyl)benzo[lmn][3,8]phenanthroline-1,3,6,8(2H,7H)-tetraone)
Authors:Liu, L.-Y, Liu, W, Mao, Z.-W.
Deposit date:2021-04-08
Release date:2021-12-15
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Spatial Matching Selectivity and Solution Structure of Organic-Metal Hybrid to Quadruplex-Duplex Hybrid.
Angew.Chem.Int.Ed.Engl., 60, 2021
7ELJ
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Prion Derived Tetrapeptide Stabilizes Thermolabile Insulin via Conformational Trapping
Descriptor: IS1, Insulin A Chain, Insulin B chain
Authors:Banerjee, N.
Deposit date:2021-04-11
Release date:2021-04-28
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Prion-derived tetrapeptide stabilizes thermolabile insulin via conformational trapping.
Iscience, 24, 2021
7ELK
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BU of 7elk by Molmil
Solution structure of Terfa derived from Danio rerio
Descriptor: Terfa protein
Authors:Yun, J.H, Kim, M, Lee, W.
Deposit date:2021-04-11
Release date:2022-04-13
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution structure of Terfa derived from Danio rerio
To Be Published
7ELY
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BU of 7ely by Molmil
A peptide with high affinity for B-Cell lymphoma2(Bcl-2)
Descriptor: 16X_BCL
Authors:Fan, S, Zha, J, Wu, C.
Deposit date:2021-04-12
Release date:2021-05-19
Last modified:2024-10-16
Method:SOLUTION NMR
Cite:An evolution-inspired strategy to design disulfide-rich peptides tolerant to extensive sequence manipulation.
Chem Sci, 12, 2021
7EN4
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BU of 7en4 by Molmil
Multi-state structure determination and dynamics analysis elucidate a new ubiquitin-recognition mechanism of yeast ubiquitin C-terminal hydrolase.
Descriptor: Ubiquitin carboxyl-terminal hydrolase YUH1
Authors:Okada, M, Tateishi, Y, Nojiri, E, Mikawa, T, Rajesh, S, Ogasawa, H, Ueda, T, Yagi, H, Kohno, T, Kigawa, T, Shimada, I, Guentert, P, Yutaka, I, Ikeya, T.
Deposit date:2021-04-15
Release date:2022-04-20
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Multi-state structure determination and dynamics analysis elucidate a new ubiquitin-recognition mechanism of yeast ubiquitin C-terminal hydrolase.
To Be Published
7EUC
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BU of 7euc by Molmil
Parallel G-quadruplex structure
Descriptor: DNA (5'-D(*TP*TP*GP*GP*GP*G)-3'), DNA (5'-D(P*GP*GP*GP*G)-3'), DNA (5'-D(P*GP*GP*GP*GP*T)-3'), ...
Authors:Winnerdy, F.R, Devi, G, Ang, J.C.Y, Lim, K.W, Phan, A.T.
Deposit date:2021-05-17
Release date:2022-03-30
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Four-Layered Intramolecular Parallel G-Quadruplex with Non-Nucleotide Loops: An Ultra-Stable Self-Folded DNA Nano-Scaffold.
Acs Nano, 16, 2022
7EXY
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BU of 7exy by Molmil
T-hairpin structure found in the RNA element involved in the piRNA biogenesis
Descriptor: RNA (5'-R(*UP*UP*GP*GP*UP*UP*UP*GP*AP*UP*UP*CP*CP*AP*AP*G)-3')
Authors:Takase, N, Kawai, G.
Deposit date:2021-05-29
Release date:2022-03-02
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:T-hairpin structure found in the RNA element involved in piRNA biogenesis.
Rna, 28, 2022
7F32
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BU of 7f32 by Molmil
Ny-Hydroxyasparagine: A Multifunctional Unnatural Amino Acid That is a Good P1 Substrate of Asparaginyl Peptide Ligases
Descriptor: SYCNCLCRRGVCRCICTI
Authors:Xia, Y, Liu, C.F.
Deposit date:2021-06-15
Release date:2022-09-07
Method:SOLUTION NMR
Cite:N gamma-Hydroxyasparagine: A Multifunctional Unnatural Amino Acid That is a Good P1 Substrate of Asparaginyl Peptide Ligases.
Angew.Chem.Int.Ed.Engl., 60, 2021
7F7N
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BU of 7f7n by Molmil
Solution structure of apo-WhiB4 from Mycobacterium tuberculosis
Descriptor: Transcriptional regulator WhiB4
Authors:Xia, B, Duan, B.
Deposit date:2021-06-30
Release date:2021-11-10
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:DNA binding mechanism of WhiB4 from Mycobacterium tuberculosis
Magn Reson Lett, 2, 2022
7F7X
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BU of 7f7x by Molmil
Protein complex between phosphorylated ubiquitin and Ubqln2 UBA
Descriptor: Polyubiquitin-B, Ubiquilin-2
Authors:Qin, L.Y, Dong, X, Tang, C.
Deposit date:2021-06-30
Release date:2022-05-18
Last modified:2024-11-13
Method:SOLUTION NMR
Cite:Kinetic Constraints in the Specific Interaction between Phosphorylated Ubiquitin and Proteasomal Shuttle Factors.
Biomolecules, 11, 2021
7FB8
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BU of 7fb8 by Molmil
De Novo-Designed and Disulfide-Bridged Peptide Heterodimer - hd1
Descriptor: ASP-ASP-LYS-ASP-CYS-ASP-GLU-TYR-CYS-LYS-LYS-THR-LYS-GLU-NH2, GLU-LE1-THR-GLY-HIS-ILE-GLU-GLY-PRO-THR-LE1-THR-LE1-HIS-CYS-LYS-NH2
Authors:Yao, H, Yao, S, Zheng, Y, Moyer, A, Baker, D, Wu, C.
Deposit date:2021-07-08
Release date:2022-05-18
Last modified:2023-11-15
Method:SOLUTION NMR
Cite:De novo design and directed folding of disulfide-bridged peptide heterodimers.
Nat Commun, 13, 2022
7FBA
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BU of 7fba by Molmil
De Novo-Designed and Disulfide-Bridged Peptide Heterodimer - hd2
Descriptor: ALA-LE1-CYS-GLU-CYS-GLY-PRO-THR-ARG-GLU-CYS-LYS-NH2, GLU-CYS-ARG-GLU-TYR-GLY-PRO-LE1-LYS-LE1-LE1-ALA-NH2
Authors:Yao, H, Yao, S, Moyer, A, Zheng, Y, Baker, D, Wu, C.
Deposit date:2021-07-08
Release date:2022-05-18
Last modified:2023-11-15
Method:SOLUTION NMR
Cite:De novo design and directed folding of disulfide-bridged peptide heterodimers.
Nat Commun, 13, 2022
7FBR
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BU of 7fbr by Molmil
Solution structure of The first RNA binding domain of Matrin-3
Descriptor: Matrin-3
Authors:Muto, Y, Kobayashi, N, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2021-07-12
Release date:2022-02-16
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:1 H, 13 C and 15 N resonance assignments and solution structures of the two RRM domains of Matrin-3.
Biomol.Nmr Assign., 16, 2022
7FBV
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BU of 7fbv by Molmil
The solution structure of the second RRM domain of Matrin-3
Descriptor: Matrin-3
Authors:Muto, Y, Kobayashi, N, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2021-07-13
Release date:2022-02-16
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:1 H, 13 C and 15 N resonance assignments and solution structures of the two RRM domains of Matrin-3.
Biomol.Nmr Assign., 16, 2022
7FGT
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BU of 7fgt by Molmil
Discovery of DS15060524; Gene targeting chimera (GeneTAC) for the treatment of Friedreich's Ataxia (FRDA)
Descriptor: DNA (5'-D(*AP*AP*GP*AP*AP*GP*AP*AP*G)-3'), DNA (5'-D(*CP*TP*TP*CP*TP*TP*CP*TP*T)-3'), ~{N}-[3-[3-(dimethylamino)propylamino]-3-oxidanylidene-propyl]-1-methyl-4-[3-[[1-methyl-4-[[1-methyl-4-[3-[[1-methyl-4-[(1-methylimidazol-2-yl)carbonylamino]pyrrol-2-yl]carbonylamino]propanoylamino]imidazol-2-yl]carbonylamino]pyrrol-2-yl]carbonylamino]propanoylamino]imidazole-2-carboxamide
Authors:Takase, N, Kawai, G, Igarashi, W, Katagiri, T.
Deposit date:2021-07-28
Release date:2022-08-03
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Discovery of DS15060524; Gene targeting chimera (GeneTAC) for the treatment of Friedreich's Ataxia (FRDA)
To be published
7FHI
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Interaction between a fluoroquinolone derivative and RNAs with a single bulge
Descriptor: 1-cyclopropyl-N-[3-(dimethylamino)propyl]-7-(4-ethylpiperazin-1-yl)-6-fluoranyl-4-oxidanylidene-quinoline-3-carboxamide, RNA (5'-R(*GP*GP*AP*UP*GP*CP*UP*UP*AP*CP*UP*CP*AP*GP*CP*CP*AP*UP*CP*C)-3')
Authors:Nagano, K, Kamimura, T, Kawai, G.
Deposit date:2021-07-29
Release date:2021-12-01
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Interaction between a fluoroquinolone derivative and RNAs with a single bulge.
J.Biochem., 171, 2022
7FHQ
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Solution structure of the pathogenic mutant G131V of Human prion protein (91-231)
Descriptor: Major prion protein
Authors:Zhang, H, Lin, D.
Deposit date:2021-07-29
Release date:2022-07-06
Last modified:2024-11-06
Method:SOLUTION NMR
Cite:Solution structure of the pathogenic mutant G131V of Human prion protein
To Be Published
7FJ0
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Interaction between a fluoroquinolone derivative and RNAs with a single bulge
Descriptor: 1-cyclopropyl-N-[3-(dimethylamino)propyl]-7-(4-ethylpiperazin-1-yl)-6-fluoranyl-4-oxidanylidene-quinoline-3-carboxamide, RNA (5'-R(*GP*GP*AP*UP*GP*CP*UP*UP*AP*CP*UP*CP*AP*GP*CP*GP*AP*UP*CP*C)-3')
Authors:Nagano, K, Kamimura, T, Kawai, G.
Deposit date:2021-08-02
Release date:2021-12-01
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Interaction between a fluoroquinolone derivative and RNAs with a single bulge.
J.Biochem., 171, 2022

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