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Legacy flatfile-incompatible PDB entries
9ERX
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Structural basis of D9-THC analog activity at the Cannabinoid 1 receptor
Descriptor: (6aR,10aR)-9-(hydroxymethyl)-6,6-dimethyl-3-(2-methyloctan-2-yl)-6a,7,10,10a-tetrahydrobenzo[c]chromen-1-ol, Antibody ScFv16 Fab fragment, Cannabinoid receptor 1, ...
Authors:Thorsen, T.S, Kulkarni, Y, Boggild, A, Drace, T, Nissen, P, Gajhede, M, Boesen, T, Kastrup, J.S, Gloriam, D.
Deposit date:2024-03-25
Release date:2024-06-26
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structural basis of Delta 9 -THC analog activity at the Cannabinoid 1 receptor.
Res Sq, 2024
9ESA
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Aurora-C with SER mutation in complex with INCENP peptide
Descriptor: 1,2-ETHANEDIOL, Aurora kinase C, Inner centromere protein
Authors:Hillig, R.C.
Deposit date:2024-03-26
Release date:2024-09-11
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Surface-mutagenesis strategies to enable structural biology crystallization platforms.
Acta Crystallogr D Struct Biol, 2024
9ESM
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BU of 9esm by Molmil
Archaellum filament from the Halobacterium salinarum deltaAgl26 strain
Descriptor: Archaellin, beta-D-glucopyranuronic acid-(1-4)-beta-D-glucopyranose
Authors:Grosmann-Haham, I, Shahar, A.
Deposit date:2024-03-26
Release date:2024-07-17
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (3.06 Å)
Cite:Perturbed N-glycosylation of Halobacterium salinarum archaellum filaments leads to filament bundling and compromised cell motility.
Nat Commun, 15, 2024
9ETU
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Archaellum filament from the Halobacterium salinarum deltaAgl27 strain
Descriptor: 3-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-beta-D-glucopyranuronic acid-(1-4)-beta-D-glucopyranose, Archaellin
Authors:Grossman-Haham, I, Shahar, A.
Deposit date:2024-03-27
Release date:2024-07-17
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (3.33 Å)
Cite:Perturbed N-glycosylation of Halobacterium salinarum archaellum filaments leads to filament bundling and compromised cell motility.
Nat Commun, 15, 2024
9EU6
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The FK1 domain of FKBP51 in complex with SAFit-analog 23j
Descriptor: (1,5-dimethylpyrazol-4-yl)methyl (2~{S})-1-[(2~{S})-2-cyclohexyl-2-(3,4,5-trimethoxyphenyl)ethanoyl]piperidine-2-carboxylate, Peptidyl-prolyl cis-trans isomerase FKBP5
Authors:Meyners, C, Buffa, V, Hausch, F.
Deposit date:2024-03-27
Release date:2024-06-12
Last modified:2024-09-11
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:1,4-Pyrazolyl-Containing SAFit-Analogues are Selective FKBP51 Inhibitors With Improved Ligand Efficiency and Drug-Like Profile.
Chemmedchem, 19, 2024
9EU7
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The FK1 domain of FKBP51 in complex with SAFit-analog 15b
Descriptor: (2-methyl-1,3-thiazol-5-yl)methyl (2S)-1-[(2S)-2-cyclohexyl-2-(3,4,5-trimethoxyphenyl)ethanoyl]piperidine-2-carboxylate, Peptidyl-prolyl cis-trans isomerase FKBP5
Authors:Meyners, C, Buffa, V, Hausch, F.
Deposit date:2024-03-27
Release date:2024-06-12
Last modified:2024-09-11
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:1,4-Pyrazolyl-Containing SAFit-Analogues are Selective FKBP51 Inhibitors With Improved Ligand Efficiency and Drug-Like Profile.
Chemmedchem, 19, 2024
9EU8
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The FK1 domain of FKBP51 in complex with SAFit-analog 15h
Descriptor: (4-methyl-1,3-thiazol-5-yl)methyl (2S)-1-[(2S)-2-cyclohexyl-2-(3,4,5-trimethoxyphenyl)ethanoyl]piperidine-2-carboxylate, Peptidyl-prolyl cis-trans isomerase FKBP5
Authors:Meyners, C, Buffa, V, Hausch, F.
Deposit date:2024-03-27
Release date:2024-06-12
Last modified:2024-09-11
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:1,4-Pyrazolyl-Containing SAFit-Analogues are Selective FKBP51 Inhibitors With Improved Ligand Efficiency and Drug-Like Profile.
Chemmedchem, 19, 2024
9EU9
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The FK1 domain of FKBP51 in complex with SAFit-analog 15i
Descriptor: (4-chloranyl-1,3-thiazol-5-yl)methyl (2S)-1-[(2S)-2-cyclohexyl-2-(3,4,5-trimethoxyphenyl)ethanoyl]piperidine-2-carboxylate, Peptidyl-prolyl cis-trans isomerase FKBP5
Authors:Meyners, C, Buffa, V, Hausch, F.
Deposit date:2024-03-27
Release date:2024-06-12
Last modified:2024-09-11
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:1,4-Pyrazolyl-Containing SAFit-Analogues are Selective FKBP51 Inhibitors With Improved Ligand Efficiency and Drug-Like Profile.
Chemmedchem, 19, 2024
9EUA
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The FK1 domain of FKBP51 in complex with SAFit-analog 23d
Descriptor: (1-propylpyrazol-4-yl)methyl (2S)-1-[(2S)-2-cyclohexyl-2-(3,4,5-trimethoxyphenyl)ethanoyl]piperidine-2-carboxylate, Peptidyl-prolyl cis-trans isomerase FKBP5
Authors:Meyners, C, Buffa, V, Hausch, F.
Deposit date:2024-03-27
Release date:2024-06-12
Last modified:2024-09-11
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:1,4-Pyrazolyl-Containing SAFit-Analogues are Selective FKBP51 Inhibitors With Improved Ligand Efficiency and Drug-Like Profile.
Chemmedchem, 19, 2024
9EUB
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The FK1 domain of FKBP51 in complex with SAFit-analog 24e
Descriptor: Peptidyl-prolyl cis-trans isomerase FKBP5, [1-(2-hydroxyethyl)pyrazol-4-yl]methyl (2S)-1-[(2S)-2-cyclohexyl-2-(3,4,5-trimethoxyphenyl)ethanoyl]piperidine-2-carboxylate
Authors:Meyners, C, Buffa, V, Hausch, F.
Deposit date:2024-03-27
Release date:2024-06-12
Last modified:2024-09-11
Method:X-RAY DIFFRACTION (2 Å)
Cite:1,4-Pyrazolyl-Containing SAFit-Analogues are Selective FKBP51 Inhibitors With Improved Ligand Efficiency and Drug-Like Profile.
Chemmedchem, 19, 2024
9EUC
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The FK1 domain of FKBP51 in complex with SAFit-analog 23b
Descriptor: (1-ethylpyrazol-4-yl)methyl (2S)-1-[(2S)-2-cyclohexyl-2-(3,4,5-trimethoxyphenyl)ethanoyl]piperidine-2-carboxylate, Peptidyl-prolyl cis-trans isomerase FKBP5
Authors:Meyners, C, Buffa, V, Hausch, F.
Deposit date:2024-03-27
Release date:2024-06-12
Last modified:2024-09-11
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:1,4-Pyrazolyl-Containing SAFit-Analogues are Selective FKBP51 Inhibitors With Improved Ligand Efficiency and Drug-Like Profile.
Chemmedchem, 19, 2024
9EUD
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The FK1 domain of FKBP51 in complex with SAFit-analog 23c
Descriptor: (1-propan-2-ylpyrazol-4-yl)methyl (2S)-1-[(2S)-2-cyclohexyl-2-(3,4,5-trimethoxyphenyl)ethanoyl]piperidine-2-carboxylate, Peptidyl-prolyl cis-trans isomerase FKBP5
Authors:Meyners, C, Buffa, V, Hausch, F.
Deposit date:2024-03-27
Release date:2024-06-12
Last modified:2024-09-11
Method:X-RAY DIFFRACTION (2.022 Å)
Cite:1,4-Pyrazolyl-Containing SAFit-Analogues are Selective FKBP51 Inhibitors With Improved Ligand Efficiency and Drug-Like Profile.
Chemmedchem, 19, 2024
9EUE
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The FK1 domain of FKBP51 in complex with SAFit-analog 23a
Descriptor: (1-methylpyrazol-4-yl)methyl (2S)-1-[(2S)-2-cyclohexyl-2-(3,4,5-trimethoxyphenyl)ethanoyl]piperidine-2-carboxylate, Peptidyl-prolyl cis-trans isomerase FKBP5
Authors:Meyners, C, Buffa, V, Hausch, F.
Deposit date:2024-03-27
Release date:2024-06-12
Last modified:2024-09-11
Method:X-RAY DIFFRACTION (2 Å)
Cite:1,4-Pyrazolyl-Containing SAFit-Analogues are Selective FKBP51 Inhibitors With Improved Ligand Efficiency and Drug-Like Profile.
Chemmedchem, 19, 2024
9EUO
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BU of 9euo by Molmil
Outward-open structure of Drosophila dopamine transporter bound to an atypical non-competitive inhibitor
Descriptor: 9D5 ANTIBODY, HEAVY CHAIN, LIGHT CHAIN, ...
Authors:Pedersen, C.N, Yang, F, Ita, S, Xu, Y, Akunuri, R, Trampari, S, Neumann, C.M.T, Desdorf, L.M, Schioett, B, Salvino, J.M, Mortensen, O.V, Nissen, P, Shahsavar, A.
Deposit date:2024-03-27
Release date:2024-07-24
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Cryo-EM structure of the dopamine transporter with a novel atypical non-competitive inhibitor bound to the orthosteric site.
J.Neurochem., 2024
9EVX
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cryoEM structure of Photosystem II averaged across S2-S3 states at 1.71 Angstrom resolution
Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ...
Authors:Hussein, R, Graca, A, Zouni, A, Messinger, J, Schroder, W.P.
Deposit date:2024-04-02
Release date:2024-06-12
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (1.71 Å)
Cite:Cryo-electron microscopy reveals hydrogen positions and water networks in photosystem II.
Science, 384, 2024
9EX0
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BU of 9ex0 by Molmil
X-ray structure of a polyoxidovanadate/lysozyme adduct obtained when the protein is treated with [VIVO(acac)2] in 1.1 M NaCl, 0.1 M sodium acetate at pH 4.0 (Structure A)
Descriptor: CHLORIDE ION, Lysozyme C, Polyoxidovanadate complex, ...
Authors:Tito, G, Merlino, A, Ferraro, G.
Deposit date:2024-04-05
Release date:2024-06-26
Last modified:2024-07-31
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Non-Covalent and Covalent Binding of New Mixed-Valence Cage-like Polyoxidovanadate Clusters to Lysozyme.
Angew.Chem.Int.Ed.Engl., 63, 2024
9EX1
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X-ray structure of a polyoxidovanadate/lysozyme adduct obtained when the protein is treated with [VIVO(acac)2] in 1.1 M NaCl, 0.1 M sodium acetate at pH 4.0 (Structure B)
Descriptor: CHLORIDE ION, Lysozyme C, Polyoxidovanadate complex
Authors:Tito, G, Merlino, A, Ferraro, G.
Deposit date:2024-04-05
Release date:2024-06-26
Last modified:2024-07-31
Method:X-RAY DIFFRACTION (1.785 Å)
Cite:Non-Covalent and Covalent Binding of New Mixed-Valence Cage-like Polyoxidovanadate Clusters to Lysozyme.
Angew.Chem.Int.Ed.Engl., 63, 2024
9EX2
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X-ray structure of a polyoxidovanadate/lysozyme adduct obtained when the protein is treated with [VIVO(acac)2] in 1.1 M NaCl, 0.1 M sodium acetate at pH 4.0 (Structure C)
Descriptor: CHLORIDE ION, Lysozyme C, Polyoxidovanadate complex, ...
Authors:Tito, G, Merlino, A, Ferraro, G.
Deposit date:2024-04-05
Release date:2024-06-26
Last modified:2024-07-31
Method:X-RAY DIFFRACTION (1.172 Å)
Cite:Non-Covalent and Covalent Binding of New Mixed-Valence Cage-like Polyoxidovanadate Clusters to Lysozyme.
Angew.Chem.Int.Ed.Engl., 63, 2024
9EXW
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Crystal structure of the PWWP1 domain of NSD2 bound by compound 17.
Descriptor: 1,2-ETHANEDIOL, 7-[3-methyl-5-[2-methyl-5-[(pyridin-3-ylamino)methyl]phenyl]imidazol-4-yl]-4~{H}-1,4-benzoxazin-3-one, Histone-lysine N-methyltransferase NSD2
Authors:Collie, G.W.
Deposit date:2024-04-09
Release date:2024-05-29
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.43 Å)
Cite:Identification of Novel Potent NSD2-PWWP1 Ligands Using Structure-Based Design and Computational Approaches.
J.Med.Chem., 67, 2024
9EXX
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Crystal structure of the PWWP1 domain of NSD2 bound by compound 18.
Descriptor: 1,2-ETHANEDIOL, 4-methyl-3-[1-methyl-5-(3-oxidanylidene-4~{H}-1,4-benzoxazin-7-yl)imidazol-4-yl]-~{N}-phenyl-benzamide, ETHANOL, ...
Authors:Collie, G.W.
Deposit date:2024-04-09
Release date:2024-05-29
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.943 Å)
Cite:Identification of Novel Potent NSD2-PWWP1 Ligands Using Structure-Based Design and Computational Approaches.
J.Med.Chem., 67, 2024
9EXY
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Crystal structure of the PWWP1 domain of NSD2 bound by compound 34.
Descriptor: 7-[5-methyl-3-[2-methyl-5-(piperidin-1-ylmethyl)phenyl]-1,2-oxazol-4-yl]-4~{H}-1,4-benzoxazin-3-one, Histone-lysine N-methyltransferase NSD2
Authors:Collie, G.W.
Deposit date:2024-04-09
Release date:2024-05-29
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.699 Å)
Cite:Identification of Novel Potent NSD2-PWWP1 Ligands Using Structure-Based Design and Computational Approaches.
J.Med.Chem., 67, 2024
9EY3
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The FK1 domain of FKBP51 in complex with (3S,11S,11aS)-12-((3,5-dichlorophenyl)sulfonyl)-5-oxo-11-vinyldecahydro-1H-6,10-epiminopyrrolo[1,2-a]azonine-3-carboxylic acid
Descriptor: (1~{S},4~{S},7~{S},8~{S},9~{R})-13-[3,5-bis(chloranyl)phenyl]sulfonyl-8-ethenyl-2-oxidanylidene-3,13-diazatricyclo[7.3.1.0^{3,7}]tridecane-4-carboxylic acid, Peptidyl-prolyl cis-trans isomerase FKBP5
Authors:Meyners, C, Krajczy, P, Hausch, F.
Deposit date:2024-04-09
Release date:2024-06-12
Last modified:2024-08-28
Method:X-RAY DIFFRACTION (1.16 Å)
Cite:Structure-Based Design of Ultrapotent Tricyclic Ligands for FK506-Binding Proteins.
Chemistry, 30, 2024
9EY4
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The FK1 domain of FKBP51 in complex with (3S,11S)-12-((3,5-dichlorophenyl)sulfonyl)-5-oxo-11-vinyldecahydro-1H-6,10-epiminopyrrolo[1,2-a]azonine-3-carboxamide
Descriptor: (1~{S},4~{S},7~{S},8~{S},9~{R})-13-[3,5-bis(chloranyl)phenyl]sulfonyl-8-ethenyl-2-oxidanylidene-3,13-diazatricyclo[7.3.1.0^{3,7}]tridecane-4-carboxamide, Peptidyl-prolyl cis-trans isomerase FKBP5
Authors:Meyners, C, Krajczy, P, Hausch, F.
Deposit date:2024-04-09
Release date:2024-06-12
Last modified:2024-08-28
Method:X-RAY DIFFRACTION (1.16 Å)
Cite:Structure-Based Design of Ultrapotent Tricyclic Ligands for FK506-Binding Proteins.
Chemistry, 30, 2024
9EY8
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Crystal structure of human tyrosinase-related protein 1 (TYRP1) in complex with (s)-amino-L-tyrosine
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Ng, Y.M, Soler-Lopez, M.
Deposit date:2024-04-09
Release date:2024-05-01
Last modified:2024-07-03
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Interactions of Phenylalanine Derivatives with Human Tyrosinase: Lessons from Experimental and Theoretical tudies.
Chembiochem, 25, 2024
9EYR
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VDR complex with gemini analog UG-480
Descriptor: (1~{R},3~{S},5~{Z})-5-[(2~{E})-2-[(1~{R},3~{a}~{S},7~{a}~{R})-7~{a}-methyl-1-[(1~{R})-5-methyl-1-[(1~{S},2~{S})-2-(3-methyl-3-oxidanyl-butyl)cyclopropyl]-5-oxidanyl-hexyl]-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol, Nuclear receptor coactivator 1, Vitamin D3 receptor A
Authors:Rochel, N.
Deposit date:2024-04-09
Release date:2024-06-19
Last modified:2024-07-10
Method:X-RAY DIFFRACTION (2.56 Å)
Cite:Design, Synthesis, and Biological Evaluation of New Type of Gemini Analogues with a Cyclopropane Moiety in Their Side Chain.
J.Med.Chem., 67, 2024

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PDB entries from 2024-09-11

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