Legacy flatfile-incompatible PDB entries

8BE4	Crystal structure of SOS1-KRasG12V-Nanobody14 Descriptor: Isoform 2B of GTPase KRas, Nanobody14, Son of sevenless homolog 1 Authors: Fischer, B, Wohlkonig, A, Steyaert, J. Deposit date: 2022-10-21 Release date: 2023-11-01 Last modified: 2024-08-14 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Allosteric nanobodies to study the interactions between SOS1 and RAS. Nat Commun, 15, 2024
8BE5	Crystal structure of SOS1-KRasG12V-Nanobody22-Nanobody75 Descriptor: Isoform 2B of GTPase KRas, Nanobody22, Nanobody75, ... Authors: Fischer, B, Wohlkonig, A, Steyaert, J. Deposit date: 2022-10-21 Release date: 2023-11-01 Last modified: 2024-08-14 Method: X-RAY DIFFRACTION (3.13 Å) Cite: Allosteric nanobodies to study the interactions between SOS1 and RAS. Nat Commun, 15, 2024
8BF7	Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ... Authors: Koziej, L, Glatt, S. Deposit date: 2022-10-24 Release date: 2023-08-16 Method: ELECTRON MICROSCOPY (2.33 Å) Cite: Modulation of translational decoding by m 6 A modification of mRNA. Nat Commun, 14, 2023
8BFL	Jumbo Phage phi-kp24 empty capsid hexamers Descriptor: Major head protein Authors: Ouyang, R. Deposit date: 2022-10-26 Release date: 2022-12-07 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (4.1 Å) Cite: High-resolution reconstruction of a Jumbo-bacteriophage infecting capsulated bacteria using hyperbranched tail fibers. Nat Commun, 13, 2022
8BFP	Jumbo Phage phi-kp24 empty capsid pentamer hexamers Descriptor: Major head protein Authors: Ouyang, R. Deposit date: 2022-10-26 Release date: 2022-12-07 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (4.1 Å) Cite: High-resolution reconstruction of a Jumbo-bacteriophage infecting capsulated bacteria using hyperbranched tail fibers. Nat Commun, 13, 2022
8BGB	Structure of the citrate-bound extracytoplasmic PAS domain of histidine kinase CitA from Geobacillus thermodenitrificans Descriptor: CITRATE ANION, Histidine kinase, SODIUM ION Authors: Becker, S. Deposit date: 2022-10-27 Release date: 2023-11-08 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Structure of the citrate-bound extracytoplasmic PAS domain of histidine kinase CitA from Geobacillus thermodenitrificans To Be Published
8BGE	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ... Authors: Koziej, L, Glatt, S. Deposit date: 2022-10-27 Release date: 2023-08-16 Method: ELECTRON MICROSCOPY (2.11 Å) Cite: Modulation of translational decoding by m 6 A modification of mRNA. Nat Commun, 14, 2023
8BGH	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ... Authors: Koziej, L, Glatt, S. Deposit date: 2022-10-27 Release date: 2023-08-16 Method: ELECTRON MICROSCOPY (2.88 Å) Cite: Modulation of translational decoding by m 6 A modification of mRNA. Nat Commun, 14, 2023
8BGI	GABA-A receptor a5 homomer - a5V1 - Flumazenil Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Gamma-aminobutyric acid receptor subunit alpha-5, Pregnanolone, ... Authors: Miller, P.S, Malinauskas, T.M, Omari, K.E, Aricescu, A.R. Deposit date: 2022-10-27 Release date: 2023-11-08 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.56 Å) Cite: The molecular basis of drug selectivity for alpha 5 subunit-containing GABA A receptors. Nat.Struct.Mol.Biol., 30, 2023
8BH3	DNA-PK Ku80 mediated dimer bound to PAXX Descriptor: DNA (25-MER), DNA (26-MER), DNA (27-MER), ... Authors: Hardwick, S.W, Chaplin, A.K. Deposit date: 2022-10-28 Release date: 2023-06-07 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (4.55 Å) Cite: PAXX binding to the NHEJ machinery explains functional redundancy with XLF. Sci Adv, 9, 2023
8BH4	Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ... Authors: Koziej, L, Glatt, S. Deposit date: 2022-10-29 Release date: 2023-08-16 Method: ELECTRON MICROSCOPY (2.62 Å) Cite: Modulation of translational decoding by m 6 A modification of mRNA. Nat Commun, 14, 2023
8BHF	Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4 Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S11, ... Authors: Absmeier, E, Chandrasekaran, V, O'Reilly, F.J, Stowell, J.A.W, Rappsilber, J, Passmore, L.A. Deposit date: 2022-10-31 Release date: 2023-09-06 Last modified: 2023-11-01 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Modulation of GluA2-gamma 5 synaptic complex desensitization, polyamine block and antiepileptic perampanel inhibition by auxiliary subunit cornichon-2. Nat.Struct.Mol.Biol., 30, 2023
8BHJ	Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ... Authors: Koziej, L, Glatt, S. Deposit date: 2022-10-31 Release date: 2023-08-16 Method: ELECTRON MICROSCOPY (2.81 Å) Cite: Modulation of translational decoding by m 6 A modification of mRNA. Nat Commun, 14, 2023
8BHL	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and Am6AA mRNA codon in the A-site after uncompleted di-peptide formation Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ... Authors: Koziej, L, Glatt, S. Deposit date: 2022-10-31 Release date: 2023-08-16 Method: ELECTRON MICROSCOPY (2.21 Å) Cite: Modulation of translational decoding by m 6 A modification of mRNA. Nat Commun, 14, 2023
8BHN	Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ... Authors: Koziej, L, Glatt, S. Deposit date: 2022-10-31 Release date: 2023-08-16 Method: ELECTRON MICROSCOPY (2.85 Å) Cite: Modulation of translational decoding by m 6 A modification of mRNA. Nat Commun, 14, 2023
8BHP	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ... Authors: Koziej, L, Glatt, S. Deposit date: 2022-10-31 Release date: 2023-08-16 Method: ELECTRON MICROSCOPY (2.37 Å) Cite: Modulation of translational decoding by m 6 A modification of mRNA. Nat Commun, 14, 2023
8BHU	Crystal Structure of SilF (Ag(I) form Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, SILVER ION, SULFATE ION, ... Authors: Lithgo, R.M, Carr, S.B, Quigley, A.M, Scott, D.J. Deposit date: 2022-11-01 Release date: 2023-11-15 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Crystal Structure of SilF (apo form) To Be Published
8BHV	DNA-PK XLF mediated dimer bound to PAXX Descriptor: DNA (24-MER), DNA (26-MER), DNA (27-MER), ... Authors: Hardwick, S.W, Chaplin, A.K. Deposit date: 2022-11-01 Release date: 2023-06-07 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (4.51 Å) Cite: PAXX binding to the NHEJ machinery explains functional redundancy with XLF. Sci Adv, 9, 2023
8BHY	DNA-PK Ku80 mediated dimer bound to PAXX and XLF Descriptor: DNA (25-MER), DNA (26-MER), DNA (27-MER), ... Authors: Hardwick, S.W, Chaplin, A.K. Deposit date: 2022-11-01 Release date: 2023-06-07 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (5.33 Å) Cite: PAXX binding to the NHEJ machinery explains functional redundancy with XLF. Sci Adv, 9, 2023
8BI3	Structure of E. coli Class 2 L-asparaginase EcAIII, mutant M200W (crystal M200W#1) Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, CHLORIDE ION, ... Authors: Sciuk, A, Ruszkowski, M, Jaskolski, M, Loch, J.I. Deposit date: 2022-11-01 Release date: 2023-05-03 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.452 Å) Cite: The effects of nature-inspired amino acid substitutions on structural and biochemical properties of the E. coli L-asparaginase EcAIII. Protein Sci., 32, 2023
8BIL	Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site. Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ... Authors: Koziej, L, Glatt, S. Deposit date: 2022-11-02 Release date: 2023-08-16 Method: ELECTRON MICROSCOPY (2.04 Å) Cite: Modulation of translational decoding by m 6 A modification of mRNA. Nat Commun, 14, 2023
8BIM	Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ... Authors: Koziej, L, Glatt, S. Deposit date: 2022-11-02 Release date: 2023-08-16 Method: ELECTRON MICROSCOPY (2.04 Å) Cite: Modulation of translational decoding by m 6 A modification of mRNA. Nat Commun, 14, 2023
8BIP	Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex Descriptor: 25S rRNA, 5.8S rRNA, 5S rRNA, ... Authors: Knorr, A.G, Mackens-Kiani, T, Musial, J, Berninghausen, O, Becker, T, Beatrix, B, Beckmann, R. Deposit date: 2022-11-02 Release date: 2023-02-08 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: The dynamic architecture of Map1- and NatB-ribosome complexes coordinates the sequential modifications of nascent polypeptide chains. Plos Biol., 21, 2023
8BJP	The N288D mutant cytoplasmic PAS domain of Geobacillus thermodenitrificans histidine kinase CitA Descriptor: MAGNESIUM ION, cytoplasmic PAS domain of CitA from Geobacillus thermodenitrificans Authors: Becker, S. Deposit date: 2022-11-04 Release date: 2023-11-15 Method: X-RAY DIFFRACTION (2.1 Å) Cite: The N288D mutant cytoplasmic PAS domain of Geobacillus thermodenitrificans histidine kinase CitA To Be Published
8BJQ	Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex Descriptor: 25S rRNA, 5.8S rRNA, 5S rRNA, ... Authors: Knorr, A.G, Mackens-Kiani, T, Musial, J, Berninghausen, O, Becker, T, Beatrix, B, Beckmann, R. Deposit date: 2022-11-05 Release date: 2023-02-08 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: The dynamic architecture of Map1- and NatB-ribosome complexes coordinates the sequential modifications of nascent polypeptide chains. Plos Biol., 21, 2023

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