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Legacy flatfile-incompatible PDB entries
7Z3M
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Putative Phage Recombinase RecA
Descriptor: SULFATE ION, recombinase
Authors:Freitag-Pohl, S, Tarrant, E.J, Pohl, E.
Deposit date:2022-03-02
Release date:2023-09-13
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Crystal Structures of two novel recombinases RecA
To be published
7Z3N
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BU of 7z3n by Molmil
Cryo-EM structure of the ribosome-associated RAC complex on the 80S ribosome - RAC-1 conformation
Descriptor: 18S rRNA, 26S rRNA, 40S ribosomal protein S0, ...
Authors:Kisonaite, M, Wild, K, Sinning, I.
Deposit date:2022-03-02
Release date:2023-04-12
Last modified:2023-05-31
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural inventory of cotranslational protein folding by the eukaryotic RAC complex.
Nat.Struct.Mol.Biol., 30, 2023
7Z3O
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Cryo-EM structure of the ribosome-associated RAC complex on the 80S ribosome - RAC-2 conformation
Descriptor: 18S rRNA, 26S rRNA, 40S ribosomal protein S0, ...
Authors:Kisonaite, M, Wild, K, Sinning, I.
Deposit date:2022-03-02
Release date:2023-04-12
Last modified:2023-05-31
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structural inventory of cotranslational protein folding by the eukaryotic RAC complex.
Nat.Struct.Mol.Biol., 30, 2023
7Z3Y
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BU of 7z3y by Molmil
Structure of the mouse 8-oxoguanine DNA Glycosylase mOGG1 in complex with ligand TH013545
Descriptor: 2-[4-(3,5-dimethylpyrazol-1-yl)-2,6-bis(fluoranyl)phenyl]-~{N}-(4,5,6,7-tetrahydro-1,2-benzoxazol-3-yl)ethanamide, GLYCEROL, N-glycosylase/DNA lyase, ...
Authors:Scaletti, E.R, Stenmark, P.
Deposit date:2022-03-02
Release date:2023-03-22
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structure of the mouse 8-oxoguanine DNA Glycosylase mOGG1 in complex with ligand TH013545
To Be Published
7Z43
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BU of 7z43 by Molmil
Influenza B polymerase with Pol II pSer5 CTD peptide mimic bound in site 1B and 2B
Descriptor: PHOSPHATE ION, Polymerase acidic protein, Polymerase basic protein 2, ...
Authors:Cusack, S, Drncova, P.
Deposit date:2022-03-03
Release date:2022-05-11
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.123 Å)
Cite:Type B and type A influenza polymerases have evolved distinct binding interfaces to recruit the RNA polymerase II CTD.
Plos Pathog., 18, 2022
7Z49
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BU of 7z49 by Molmil
The capsid of bacteriophage SU10.
Descriptor: Major head protein
Authors:Siborova, M, Fuzik, T, Prochazkova, M, Novacek, J, Plevka, P.
Deposit date:2022-03-03
Release date:2022-10-05
Last modified:2023-04-19
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Tail proteins of phage SU10 reorganize into the nozzle for genome delivery.
Nat Commun, 13, 2022
7Z4B
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BU of 7z4b by Molmil
Bacteriophage SU10 virion (C1)
Descriptor: Adaptor, Major head protein, Portal protein, ...
Authors:Siborova, M, Fuzik, T, Prochazkova, M, Novacek, J, Plevka, P.
Deposit date:2022-03-03
Release date:2022-12-28
Method:ELECTRON MICROSCOPY (7.4 Å)
Cite:Tail proteins of phage SU10 reorganize into the nozzle for genome delivery.
Nat Commun, 13, 2022
7Z4O
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BU of 7z4o by Molmil
Influenza A/H7N9 polymerase core dimer with Pol II pSer5 CTD peptide mimic bound in site 2A
Descriptor: MAGNESIUM ION, Polymerase acidic protein, Polymerase basic protein 2, ...
Authors:Cusack, S, Pflug, A.
Deposit date:2022-03-04
Release date:2022-05-11
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.412 Å)
Cite:Type B and type A influenza polymerases have evolved distinct binding interfaces to recruit the RNA polymerase II CTD.
Plos Pathog., 18, 2022
7Z55
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BU of 7z55 by Molmil
Crystal Structure of the Ring Nuclease 0455 from Sulfolobus islandicus (Sis0455) in complex with its substrate
Descriptor: ACETATE ION, CRISPR-associated protein, Cyclic RNA cA4, ...
Authors:Molina, R, Martin-Garcia, R, Lopez-Mendez, B, Jensen, A.L.G, Marchena-Hurtado, J, Stella, S, Montoya, G.
Deposit date:2022-03-08
Release date:2022-11-23
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.664 Å)
Cite:Molecular basis of cyclic tetra-oligoadenylate processing by small standalone CRISPR-Cas ring nucleases.
Nucleic Acids Res., 50, 2022
7Z56
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Crystal Structure of the Ring Nuclease 0455 from Sulfolobus islandicus (Sis0455) in its apo form
Descriptor: CRISPR-associated protein
Authors:Molina, R, Martin-Garcia, R, Lopez-Mendez, B, Jensen, A.L.G, Marchena-Hurtado, J, Stella, S, Montoya, G.
Deposit date:2022-03-08
Release date:2022-11-23
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Molecular basis of cyclic tetra-oligoadenylate processing by small standalone CRISPR-Cas ring nucleases.
Nucleic Acids Res., 50, 2022
7Z5D
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BU of 7z5d by Molmil
VP2-only capsid of wt MVM prototype strain p
Descriptor: Capsid protein VP1
Authors:Luque, D, Ortega-Esteban, A, Valbuena, A, Vilas, J.L, Rodriguez-Huete, A, Mateu, M.G, Caston, J.R.
Deposit date:2022-03-09
Release date:2023-03-08
Last modified:2023-03-15
Method:ELECTRON MICROSCOPY (3.42 Å)
Cite:Equilibrium Dynamics of a Biomolecular Complex Analyzed at Single-amino Acid Resolution by Cryo-electron Microscopy.
J.Mol.Biol., 435, 2023
7Z5E
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BU of 7z5e by Molmil
VP2-only capsid of MVM D263A mutant
Descriptor: Capsid protein VP1
Authors:Luque, D, Ortega-Esteban, A, Valbuena, A, Vilas, J.L, Rodriguez-Huete, A, Mateu, M.G, Caston, J.R.
Deposit date:2022-03-09
Release date:2023-03-08
Last modified:2023-03-15
Method:ELECTRON MICROSCOPY (3.32 Å)
Cite:Equilibrium Dynamics of a Biomolecular Complex Analyzed at Single-amino Acid Resolution by Cryo-electron Microscopy.
J.Mol.Biol., 435, 2023
7Z5F
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BU of 7z5f by Molmil
VP2-only capsid of MVM D263A mutant
Descriptor: Capsid protein VP1
Authors:Luque, D, Ortega-Esteban, A, Valbuena, A, Vilas, J.L, Rodriguez-Huete, A, Mateu, M.G, Caston, J.R.
Deposit date:2022-03-09
Release date:2023-03-08
Last modified:2023-03-15
Method:ELECTRON MICROSCOPY (3.22 Å)
Cite:Equilibrium Dynamics of a Biomolecular Complex Analyzed at Single-amino Acid Resolution by Cryo-electron Microscopy.
J.Mol.Biol., 435, 2023
7Z5O
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BU of 7z5o by Molmil
W-formate dehydrogenase from Desulfovibrio vulgaris - Dithionite reduced form
Descriptor: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE, DI(HYDROXYETHYL)ETHER, Formate dehydrogenase, ...
Authors:Mota, C, Oliveira, A.R, Klymanska, K, Pereira, I.C, Romao, M.J.
Deposit date:2022-03-09
Release date:2022-07-13
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.527 Å)
Cite:Spectroscopic and Structural Characterization of Reduced Desulfovibrio vulgaris Hildenborough W-FdhAB Reveals Stable Metal Coordination during Catalysis.
Acs Chem.Biol., 17, 2022
7Z5S
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BU of 7z5s by Molmil
Crystal Structure of botulinum neurotoxin A2 cell binding domain in complex with GD1a
Descriptor: 1,2-ETHANEDIOL, Botulinum neurotoxin, HEXAETHYLENE GLYCOL, ...
Authors:Gregory, K.S, Acharya, K.R, Liu, S.M, Mahadeva, T.B.
Deposit date:2022-03-10
Release date:2022-06-08
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural Features of Clostridium botulinum Neurotoxin Subtype A2 Cell Binding Domain.
Toxins, 14, 2022
7Z5T
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BU of 7z5t by Molmil
Crystal Structure of botulinum neurotoxin A2 cell binding domain
Descriptor: ACETATE ION, Botulinum neurotoxin, PENTAETHYLENE GLYCOL
Authors:Gregory, K.S, Acharya, K.R, Liu, S.M, Mahadeva, T.B.
Deposit date:2022-03-10
Release date:2022-06-08
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Structural Features of Clostridium botulinum Neurotoxin Subtype A2 Cell Binding Domain.
Toxins, 14, 2022
7Z62
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BU of 7z62 by Molmil
Structure of the LecA lectin from Pseudomonas aeruginosa in complex with a biaryl-thiogalactoside
Descriptor: (2R,3R,4S,5R,6S)-2-(hydroxymethyl)-6-[4-[1-(4-methoxyphenyl)ethenyl]phenyl]sulfanyl-oxane-3,4,5-triol, 1,2-ETHANEDIOL, CALCIUM ION, ...
Authors:Varrot, A.
Deposit date:2022-03-10
Release date:2023-01-18
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Discovery of potent 1,1-diarylthiogalactoside glycomimetic inhibitors of Pseudomonas aeruginosa LecA with antibiofilm properties.
Eur.J.Med.Chem., 247, 2022
7Z63
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BU of 7z63 by Molmil
Structure of the LecA lectin from Pseudomonas aeruginosa in complex with a biaryl-thiogalactoside
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, PA-I galactophilic lectin, ...
Authors:Varrot, A.
Deposit date:2022-03-10
Release date:2023-01-18
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Discovery of potent 1,1-diarylthiogalactoside glycomimetic inhibitors of Pseudomonas aeruginosa LecA with antibiofilm properties.
Eur.J.Med.Chem., 247, 2022
7Z66
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BU of 7z66 by Molmil
Crystal structure of the tandem kinase & triphosphate tunnel metalloenzyme domain module of the TTM1 protein from Arabidoposis thaliana in complex with inorganic phosphate and citric acid.
Descriptor: 1,2-ETHANEDIOL, CITRIC ACID, Inorganic pyrophosphatase TTM1, ...
Authors:Hothorn, M, Martinez, J.
Deposit date:2022-03-11
Release date:2022-04-06
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural and biological insight into the plant unique multimodular triphosphosphate tunnel metalloenzymes of Arabidopsis thaliana
To Be Published
7Z6I
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BU of 7z6i by Molmil
Crystal structure of p38alpha C162S in complex with SB20358 and CAS 2094667-81-7 (behind catalytic site; Y35 in), P 21 21 21
Descriptor: 4-[4-(4-fluorophenyl)-2-[4-[methyl(oxidanyl)-$l^{3}-sulfanyl]phenyl]-1~{H}-imidazol-5-yl]pyridine, Mitogen-activated protein kinase 14, N-(2-cyclobutyl-1H-1,3-benzodiazol-5-yl)benzenesulfonamide
Authors:Baginski, B, Pous, J, Gonzalez, L, Macias, M.J, Nebreda, A.R.
Deposit date:2022-03-11
Release date:2023-06-14
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Characterization of p38 alpha autophosphorylation inhibitors that target the non-canonical activation pathway.
Nat Commun, 14, 2023
7Z6P
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BU of 7z6p by Molmil
Diels-Alderase AbyU mutant - Y76F
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, YD repeat-containing protein
Authors:Tiwari, K, Burton, N.M, Yang, S, Race, P.R.
Deposit date:2022-03-14
Release date:2023-03-29
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Structure of Diels-Alderase AbyU mutant Y76F at 1.56 Angstroms resolution.
To Be Published
7Z6T
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BU of 7z6t by Molmil
Aspergillus clavatus M36 protease without the propeptide
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, Extracellular metalloproteinase mep, ...
Authors:Wilkens, C, Qiu, J, Meyer, A.S, Morth, J.P.
Deposit date:2022-03-14
Release date:2023-03-22
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:Aspergillus clavatus M36 protease without the propeptide
To Be Published
7Z89
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Sam68
Descriptor: 1,2-ETHANEDIOL, IODIDE ION, Isoform 2 of KH domain-containing, ...
Authors:Nadal, M, Fuentes-Prior, P.
Deposit date:2022-03-16
Release date:2023-02-01
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.76 Å)
Cite:Structure and function analysis of Sam68 and hnRNP A1 synergy in the exclusion of exon 7 from SMN2 transcripts.
Protein Sci., 32, 2023
7Z8A
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Sam68
Descriptor: 1,2-ETHANEDIOL, KHDR1 protein, LITHIUM ION, ...
Authors:Nadal, M, Fuentes-Prior, P.
Deposit date:2022-03-16
Release date:2023-02-01
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Structure and function analysis of Sam68 and hnRNP A1 synergy in the exclusion of exon 7 from SMN2 transcripts.
Protein Sci., 32, 2023
7Z8F
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BU of 7z8f by Molmil
Composite structure of dynein-dynactin-BICDR on microtubules
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ARP1 actin related protein 1 homolog A, ...
Authors:Chaaban, S, Carter, A.P.
Deposit date:2022-03-17
Release date:2022-07-27
Last modified:2022-10-19
Method:ELECTRON MICROSCOPY (20 Å)
Cite:Structure of dynein-dynactin on microtubules shows tandem adaptor binding.
Nature, 610, 2022

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PDB entries from 2024-07-10

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