Legacy flatfile-incompatible PDB entries

7AV8	Crystal Structure of the second bromodomain of Pleckstrin homology domain interacting protein (PHIP) in space group P21212 Descriptor: PH-interacting protein Authors: Krojer, T, Talon, R, Fairhead, M, Szykowska, A, Burgess-Brown, N.A, Brennan, P.E, Arrowsmith, C.H, Edwards, A.M, Bountra, C, von Delft, F, Structural Genomics Consortium (SGC) Deposit date: 2020-11-04 Release date: 2021-01-13 Last modified: 2024-08-07 Method: X-RAY DIFFRACTION (1.63 Å) Cite: Crystal Structure of the second bromodomain of Pleckstrin homology domain interacting protein (PHIP) in space group P21212 To Be Published
7AV9	Crystal Structure of the second bromodomain of Pleckstrin homology domain interacting protein (PHIP) in space group C2 Descriptor: 1,2-ETHANEDIOL, PH-interacting protein Authors: Krojer, T, Talon, R, Fairhead, M, Szykowska, A, Burgess-Brown, N.A, Brennan, P.E, Arrowsmith, C.H, Edwards, A.M, Bountra, C, von Delft, F. Deposit date: 2020-11-04 Release date: 2021-01-13 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.23 Å) Cite: Crystal Structure of the second bromodomain of Pleckstrin homology domain interacting protein (PHIP) in space group C2 To Be Published
7AVC	DoBi scaffold based on PIH1D1 N-terminal domain Descriptor: GLYCEROL, PIH1 domain-containing protein 1, SODIUM ION Authors: Kolenko, P, Pham, N.P, Pavlicek, J, Mikulecky, P, Schneider, B. Deposit date: 2020-11-05 Release date: 2021-02-10 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.2 Å) Cite: Protein Binder (ProBi) as a New Class of Structurally Robust Non-Antibody Protein Scaffold for Directed Evolution. Viruses, 13, 2021
7AX3	CryoEM structure of the super-constricted two-start dynamin 1 filament Descriptor: Dynamin-1, MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER Authors: Liu, J.W, Zhang, P.J. Deposit date: 2020-11-09 Release date: 2021-11-10 Method: ELECTRON MICROSCOPY (3.74 Å) Cite: CryoEM structure of the super-constricted two-start dynamin 1 filament. Nat Commun, 12, 2021
7AYY	Structure of the human 8-oxoguanine DNA Glycosylase hOGG1 in complex with activator TH10785 Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GLYCEROL, N-glycosylase/DNA lyase, ... Authors: Masuyer, G, Davies, J.R, Stenmark, P. Deposit date: 2020-11-13 Release date: 2022-06-01 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2 Å) Cite: Small-molecule activation of OGG1 increases oxidative DNA damage repair by gaining a new function. Science, 376, 2022
7AYZ	Structure of the mouse 8-oxoguanine DNA Glycosylase mOGG1 in complex with activator TH10785 Descriptor: N-glycosylase/DNA lyase, NICKEL (II) ION, ~{N}-cyclohexyl-2-cyclopropyl-quinazolin-4-amine Authors: Masuyer, G, Davies, J.R, Stenmark, P. Deposit date: 2020-11-13 Release date: 2022-06-01 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Small-molecule activation of OGG1 increases oxidative DNA damage repair by gaining a new function. Science, 376, 2022
7AZ0	Structure of the mouse 8-oxoguanine DNA Glycosylase mOGG1 in complex with TH12161 Descriptor: 2-cyclopropyl-~{N}-(4-iodophenyl)quinazolin-4-amine, N-glycosylase/DNA lyase, NICKEL (II) ION Authors: Davies, J.R, Masuyer, G, Stenmark, P. Deposit date: 2020-11-13 Release date: 2022-06-01 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Small-molecule activation of OGG1 increases oxidative DNA damage repair by gaining a new function. Science, 376, 2022
7AZO	70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977 Descriptor: (2R,3S,4R,5R,7S,9S,10S,11R,12S,13R)-12-(((2R,4R,5S,6S)-4,5-dihydroxy-4,6-dimethyltetrahydro-2H-pyran-2-yl)oxy)-2-((S)-1-(((2R,3R,4R,5R,6R)-5-hydroxy-3,4-dimethoxy-6-methyltetrahydro-2H-pyran-2-yl)oxy)propan-2-yl)-10-(((2S,3R,4R,6R)-3-hydroxy-4-(methoxyamino)-6-methyltetrahydro-2H-pyran-2-yl)oxy)-3,5,7,9,11,13-hexamethyl-7-(((2-((2-nitrophenyl)sulfonamido)ethyl)carbamoyl)oxy)-6,14-dioxooxacyclotetradecan-4-yl 3-methylbutanoate, 16S rRNA, 23S rRNA, ... Authors: Jenner, L.B, Yusupov, M, Yusupova, G. Deposit date: 2020-11-17 Release date: 2022-06-01 Last modified: 2025-03-19 Method: X-RAY DIFFRACTION (3.3 Å) Cite: Discovery of natural-product-derived sequanamycins as potent oral anti-tuberculosis agents. Cell, 186, 2023
7AZS	70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569 Descriptor: (2R,3S,4R,5R,7S,9S,10S,11R,12S,13R)-12-(((2R,4R,5S,6S)-4,5-dihydroxy-4,6-dimethyltetrahydro-2H-pyran-2-yl)oxy)-2-((S)-1-(((2R,3R,4R,5R,6R)-5-hydroxy-3,4-dimethoxy-6-methyltetrahydro-2H-pyran-2-yl)oxy)propan-2-yl)-10-(((2S,3R,6R,E)-3-hydroxy-4-(methoxyimino)-6-methyltetrahydro-2H-pyran-2-yl)oxy)-3,5,7,9,11,13-hexamethyl-7-(((2-(2-methyl-5-nitro-1H-imidazol-1-yl)ethyl)carbamoyl)oxy)-6,14-dioxooxacyclotetradecan-4-yl 3-methylbutanoate, 16S rRNA, 23S rRNA, ... Authors: Jenner, L.B, Yusupov, M, Yusupova, G, Rak, A. Deposit date: 2020-11-17 Release date: 2022-06-08 Last modified: 2025-03-19 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Discovery of natural-product-derived sequanamycins as potent oral anti-tuberculosis agents. Cell, 186, 2023
7AZY	Context-specific inhibition of eukaryotic translation by macrolide antibiotics Descriptor: 25S ribosomal RNA, 5.8S ribosomal RNA, 5S ribosomal RNA, ... Authors: Koller, T.O, Wilson, D.N. Deposit date: 2020-11-17 Release date: 2021-05-19 Last modified: 2024-07-10 Method: ELECTRON MICROSCOPY (2.877 Å) Cite: Context-specific action of macrolide antibiotics on the eukaryotic ribosome. Nat Commun, 12, 2021
7B04	Structure of Nitrite oxidoreductase (Nxr) from the anammox bacterium Kuenenia stuttgartiensis. Descriptor: CALCIUM ION, FE3-S4 CLUSTER, IRON/SULFUR CLUSTER, ... Authors: Moreno-Chicano, T, Dietl, A, Akram, M, Barends, T.R.M. Deposit date: 2020-11-18 Release date: 2021-07-14 Last modified: 2024-06-19 Method: X-RAY DIFFRACTION (2.97 Å) Cite: Structural and functional characterization of the intracellular filament-forming nitrite oxidoreductase multiprotein complex Nat Microbiol, 2021
7B0M	Sugar transaminase from a metagenome collected from troll oil field production water Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Sugar aminotransferase, ... Authors: Littlechild, J.A, De Rose, S.A, Isupov, M.N, Sayer, C, Karki, S. Deposit date: 2020-11-20 Release date: 2021-12-01 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.43 Å) Cite: Sugar transaminases from hot environments To Be Published
7B0N	A 3.7-angstrom structure of Yarrowia lipolytica complex I with an R121M mutation in NUCM. Descriptor: 1,2-Distearoyl-sn-glycerophosphoethanolamine, Acyl carrier protein, CARDIOLIPIN, ... Authors: Hirst, J, Grba, D. Deposit date: 2020-11-20 Release date: 2021-03-10 Last modified: 2024-10-09 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: A conserved arginine residue is critical for stabilizing the N2 FeS cluster in mitochondrial complex I. J.Biol.Chem., 296, 2021
7B0U	Stressosome complex from Listeria innocua Descriptor: RsbR protein, RsbS protein Authors: Miksys, A, Fu, L, Madej, M.G, Ziegler, C. Deposit date: 2020-11-22 Release date: 2021-12-01 Last modified: 2024-11-13 Method: ELECTRON MICROSCOPY (3.86 Å) Cite: Molecular insights into intra-complex signal transmission during stressosome activation. Commun Biol, 5, 2022
7B1Y	DtxR-like iron-dependent regulator IdeR complexed with cobalt and its consensus DNA-binding sequence Descriptor: COBALT (II) ION, DtxR family iron (Metal) dependent repressor, consensus DNA-binding sequence Authors: Maurer, D, Marcos-Torres, F.J, Griese, J.J. Deposit date: 2020-11-25 Release date: 2021-03-03 Last modified: 2024-11-13 Method: X-RAY DIFFRACTION (2.12 Å) Cite: The bacterial iron sensor IdeR recognizes its DNA targets by indirect readout. Nucleic Acids Res., 49, 2021
7B20	DtxR-like iron-dependent regulator IdeR complexed with iron and its consensus DNA-binding sequence Descriptor: DtxR family iron (Metal) dependent repressor, FE (II) ION, consensus DNA-binding sequence Authors: Maurer, D, Marcos-Torres, F.J, Griese, J.J. Deposit date: 2020-11-25 Release date: 2021-03-03 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.18 Å) Cite: The bacterial iron sensor IdeR recognizes its DNA targets by indirect readout. Nucleic Acids Res., 49, 2021
7B21	The X183 domain from Cellvibrio japonicus Cbp2D Descriptor: 1,2-ETHANEDIOL, Carbohydrate binding protein, putative, ... Authors: Branch, J, Hemsworth, G.R. Deposit date: 2020-11-25 Release date: 2021-07-21 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (1.2 Å) Cite: C-type cytochrome-initiated reduction of bacterial lytic polysaccharide monooxygenases. Biochem.J., 478, 2021
7B23	DtxR-like iron-dependent regulator IdeR complexed with cobalt and the SACE_2689 promoter DNA-binding sequence Descriptor: COBALT (II) ION, DtxR family iron (Metal) dependent repressor, SACE_2689 promoter DNA-binding sequence Authors: Maurer, D, Marcos-Torres, F.J, Griese, J.J. Deposit date: 2020-11-26 Release date: 2021-03-03 Last modified: 2024-10-23 Method: X-RAY DIFFRACTION (2.15 Å) Cite: The bacterial iron sensor IdeR recognizes its DNA targets by indirect readout. Nucleic Acids Res., 49, 2021
7B24	DtxR-like iron-dependent regulator IdeR (P39G variant) complexed with cobalt and its consensus DNA-binding sequence Descriptor: COBALT (II) ION, DtxR family iron (Metal) dependent repressor, consensus DNA-binding sequence Authors: Maurer, D, Marcos-Torres, F.J, Griese, J.J. Deposit date: 2020-11-26 Release date: 2021-03-03 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.05 Å) Cite: The bacterial iron sensor IdeR recognizes its DNA targets by indirect readout. Nucleic Acids Res., 49, 2021
7B25	DtxR-like iron-dependent regulator IdeR (Q43A variant) complexed with cobalt and its consensus DNA-binding sequence Descriptor: COBALT (II) ION, DtxR family iron (Metal) dependent repressor, consensus DNA-binding sequence Authors: Maurer, D, Marcos-Torres, F.J, Griese, J.J. Deposit date: 2020-11-26 Release date: 2021-03-03 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.34 Å) Cite: The bacterial iron sensor IdeR recognizes its DNA targets by indirect readout. Nucleic Acids Res., 49, 2021
7B27	RBD domain SARS-CoV2 in complex with neutralizing nanobody NM1230 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Surface glycoprotein, neutralizing nanobody NM1230 Authors: Ostertag, E, Zocher, G, Stehle, T. Deposit date: 2020-11-26 Release date: 2021-05-12 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (2.902 Å) Cite: NeutrobodyPlex-monitoring SARS-CoV-2 neutralizing immune responses using nanobodies. Embo Rep., 22, 2021
7B2T	Crystal structure of Iripin-5 serpin from Ixodes ricinus Descriptor: CHLORIDE ION, MAGNESIUM ION, Serpin-4 precursor, ... Authors: Kascakova, B, Kuta Smatanova, I. Deposit date: 2020-11-27 Release date: 2021-10-06 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Structural and biochemical characterization of the novel serpin Iripin-5 from Ixodes ricinus. Acta Crystallogr D Struct Biol, 77, 2021
7B4I	Thermostable omega transaminase PjTA-R6 variant W58G engineered for asymmetric synthesis of enantiopure bulky amines Descriptor: Aspartate aminotransferase family protein, PYRIDOXAL-5'-PHOSPHATE, SUCCINIC ACID Authors: Capra, N, Rozeboom, H.J, Thunnissen, A.M.W.H, Janssen, D.B. Deposit date: 2020-12-02 Release date: 2021-09-01 Last modified: 2021-09-22 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Computational Redesign of an omega-Transaminase from Pseudomonas jessenii for Asymmetric Synthesis of Enantiopure Bulky Amines. Acs Catalysis, 11, 2021
7B4O	A Bacteroidetes bacterium CuZn-superoxide dismutase with ZnZn metalation Descriptor: Superoxide dismutase [Cu-Zn], ZINC ION Authors: Wright, G.S.A. Deposit date: 2020-12-02 Release date: 2021-06-02 Last modified: 2024-11-20 Method: X-RAY DIFFRACTION (1.41 Å) Cite: Bacterial Evolutionary Precursors of Eukaryotic Copper-Zinc Superoxide Dismutases. Mol.Biol.Evol., 38, 2021
7B4P	A Bacteroidetes bacterium CuZn-superoxide dismutase with CuZn metalation Descriptor: COPPER (II) ION, Superoxide dismutase [Cu-Zn], ZINC ION Authors: Wright, G.S.A. Deposit date: 2020-12-02 Release date: 2021-06-02 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Bacterial Evolutionary Precursors of Eukaryotic Copper-Zinc Superoxide Dismutases. Mol.Biol.Evol., 38, 2021

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