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Legacy flatfile-incompatible PDB entries
6WFT
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BU of 6wft by Molmil
BatAAV-10HB - genome-containing particles
Descriptor: 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE, VP1 capsid
Authors:Mietzsch, M, Agbandje-McKenna, M.
Deposit date:2020-04-04
Release date:2020-06-24
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.03 Å)
Cite:Structural characterization of a bat Adeno-associated virus capsid.
J.Struct.Biol., 211, 2020
6WFU
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BU of 6wfu by Molmil
BatAAV-10HB - empty particles
Descriptor: VP1 capsid
Authors:Mietzsch, M, Agbandje-McKenna, M.
Deposit date:2020-04-04
Release date:2020-06-24
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.03 Å)
Cite:Structural characterization of a bat Adeno-associated virus capsid.
J.Struct.Biol., 211, 2020
6WH3
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BU of 6wh3 by Molmil
Capsid structure of Penaeus monodon metallodensovirus at pH 8.2
Descriptor: CALCIUM ION, Penaeus monodon metallodensovirus major capsid protein
Authors:Penzes, J.J, Pham, H.T, Chipman, P, Bhattacharya, N, McKenna, R, Agbandje-McKenna, M, Tijssen, P.
Deposit date:2020-04-07
Release date:2020-04-22
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (2.96 Å)
Cite:Molecular biology and structure of a novel penaeid shrimp densovirus elucidate convergent parvoviral host capsid evolution.
Proc.Natl.Acad.Sci.USA, 117, 2020
6WH7
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BU of 6wh7 by Molmil
Capsid structure of Penaeus monodon metallodensovirus following EDTA treatment
Descriptor: Penaeus monodon metallodensovirus major capsid protein
Authors:Penzes, J.J, Pham, H.T, Chipman, P, Bhattacharya, N, McKenna, R, Agbandje-McKenna, M, Tijssen, P.
Deposit date:2020-04-07
Release date:2020-04-22
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (2.78 Å)
Cite:Molecular biology and structure of a novel penaeid shrimp densovirus elucidate convergent parvoviral host capsid evolution.
Proc.Natl.Acad.Sci.USA, 117, 2020
6WJD
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BU of 6wjd by Molmil
SA-like state of human 26S Proteasome with non-cleavable M1-linked hexaubiquitin and E3 ubiquitin ligase E6AP/UBE3A
Descriptor: 26S proteasome complex subunit SEM1, 26S proteasome non-ATPase regulatory subunit 1, 26S proteasome non-ATPase regulatory subunit 11, ...
Authors:Chen, X, Walters, K.J.
Deposit date:2020-04-13
Release date:2020-08-05
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (4.8 Å)
Cite:Cryo-EM Reveals Unanchored M1-Ubiquitin Chain Binding at hRpn11 of the 26S Proteasome.
Structure, 28, 2020
6WKS
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BU of 6wks by Molmil
Structure of SARS-CoV-2 nsp16/nsp10 in complex with RNA cap analogue (m7GpppA) and S-adenosylmethionine
Descriptor: 1,2-ETHANEDIOL, 2'-O-methyltransferase, ADENOSINE, ...
Authors:Gupta, Y.K, Viswanathan, T, Arya, S, Qi, S, Misra, A, Chan, S.-H.
Deposit date:2020-04-16
Release date:2020-05-06
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis of RNA cap modification by SARS-CoV-2.
Nat Commun, 11, 2020
6WKV
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BU of 6wkv by Molmil
Cryo-EM structure of engineered variant of the Encapsulin from Thermotoga maritima (TmE)
Descriptor: Encapsulin, FLAVIN MONONUCLEOTIDE
Authors:Williams, E, Jenkins, M, Zhao, H, Juneja, P, Lutz, S.
Deposit date:2020-04-17
Release date:2021-04-21
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (2.99 Å)
Cite:Cryo-EM structure of engineered variant of the Encapsulin from Thermotoga maritima (TmE)
To Be Published
6WKX
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BU of 6wkx by Molmil
Cryo-EM of Form 1 related peptide filament, 15-10-3
Descriptor: peptide 15-10-3
Authors:Wang, F, Gnewou, O.M, Egelman, E.H, Conticello, V.P.
Deposit date:2020-04-17
Release date:2020-12-02
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Structural analysis of cross alpha-helical nanotubes provides insight into the designability of filamentous peptide nanomaterials.
Nat Commun, 12, 2021
6WL7
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BU of 6wl7 by Molmil
Cryo-EM of Form 2 like peptide filament, 29-20-2
Descriptor: peptide 29-20-2
Authors:Wang, F, Gnewou, O.M, Modlin, C, Egelman, E.H, Conticello, V.P.
Deposit date:2020-04-18
Release date:2020-12-02
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structural analysis of cross alpha-helical nanotubes provides insight into the designability of filamentous peptide nanomaterials.
Nat Commun, 12, 2021
6WL8
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BU of 6wl8 by Molmil
Cryo-EM of Form 2 peptide filament
Descriptor: Form 2 peptide
Authors:Wang, F, Gnewou, O.M, Xu, C, Su, Z, Egelman, E.H, Conticello, V.P.
Deposit date:2020-04-18
Release date:2020-12-02
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Structural analysis of cross alpha-helical nanotubes provides insight into the designability of filamentous peptide nanomaterials.
Nat Commun, 12, 2021
6WL9
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BU of 6wl9 by Molmil
Cryo-EM of Form 2 like peptide filament, Form2a
Descriptor: peptide Form2a
Authors:Wang, F, Beltran, L.C, Gnewou, O.M, Egelman, E.H, Conticello, V.P.
Deposit date:2020-04-18
Release date:2020-12-02
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Structural analysis of cross alpha-helical nanotubes provides insight into the designability of filamentous peptide nanomaterials.
Nat Commun, 12, 2021
6WLA
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BU of 6wla by Molmil
Antigen binding fragment of ch128.1
Descriptor: Fab ch128.1 heavy chain, Fab ch128.1 light chain, GLYCEROL
Authors:Helguera, G, Rodriguez, J.A, Sawaya, M, Cascio, D, Zink, S, Ziegenbein, J, Short, C.
Deposit date:2020-04-18
Release date:2021-03-24
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Host receptor-targeted therapeutic approach to counter pathogenic New World mammarenavirus infections.
Nat Commun, 13, 2022
6WNV
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BU of 6wnv by Molmil
70S ribosome without free 5S rRNA and with a perturbed PTC
Descriptor: 16S ribosomal RNA, 23s-5s joint ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Loveland, A.B, Korostelev, A.A, Mankin, A.S, Huang, S, Aleksashin, N.A, Klepacki, D, Reier, K, Kefi, A, Szal, A, Remme, J, Jaeger, L, Vazquez-Laslop, N.
Deposit date:2020-04-23
Release date:2020-06-24
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Ribosome engineering reveals the importance of 5S rRNA autonomy for ribosome assembly.
Nat Commun, 11, 2020
6WNW
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BU of 6wnw by Molmil
Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA
Descriptor: 16S ribosomal RNA, 23s-5s joint ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Loveland, A.B, Korostelev, A.A, Mankin, A.S, Huang, S, Aleksashin, N.A, Klepacki, D, Reier, K, Kefi, A, Szal, A, Remme, J, Jaeger, L, Vazquez-Laslop, N.
Deposit date:2020-04-23
Release date:2020-06-24
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Ribosome engineering reveals the importance of 5S rRNA autonomy for ribosome assembly.
Nat Commun, 11, 2020
6WOO
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BU of 6woo by Molmil
CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
Descriptor: 18S ribosomal RNA, 25S ribosomal RNA, 5.8S ribosomal rRNA, ...
Authors:Wang, J, Wang, J, Puglisi, J, Fernandez, I.S.
Deposit date:2020-04-25
Release date:2020-09-23
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structural basis for the transition from translation initiation to elongation by an 80S-eIF5B complex.
Nat Commun, 11, 2020
6WOT
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BU of 6wot by Molmil
Cryo-EM structure of recombinant rabbit Ryanodine Receptor type 1 mutant R164C in complex with FKBP12.6
Descriptor: Peptidyl-prolyl cis-trans isomerase FKBP1B, Ryanodine receptor 1, ZINC ION
Authors:Iyer, K.A, Hu, Y, Kurebayashi, N, Murayama, T, Samso, M.
Deposit date:2020-04-25
Release date:2020-08-05
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.54 Å)
Cite:Structural mechanism of two gain-of-function cardiac and skeletal RyR mutations at an equivalent site by cryo-EM.
Sci Adv, 6, 2020
6WOU
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BU of 6wou by Molmil
Cryo-EM structure of recombinant mouse Ryanodine Receptor type 2 mutant R176Q in complex with FKBP12.6 in nanodisc
Descriptor: Peptidyl-prolyl cis-trans isomerase FKBP1B, Ryanodine receptor 2, ZINC ION
Authors:Iyer, K.A, Hu, Y, Kurebayashi, N, Murayama, T, Samso, M.
Deposit date:2020-04-25
Release date:2020-08-05
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.27 Å)
Cite:Structural mechanism of two gain-of-function cardiac and skeletal RyR mutations at an equivalent site by cryo-EM.
Sci Adv, 6, 2020
6WOV
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BU of 6wov by Molmil
Cryo-EM structure of recombinant mouse Ryanodine Receptor type 2 wild type in complex with FKBP12.6
Descriptor: Peptidyl-prolyl cis-trans isomerase FKBP1B, Ryanodine receptor 2, ZINC ION
Authors:Iyer, K.A, Hu, Y, Nayak, A.R, Kurebayashi, N, Murayama, T, Samso, M.
Deposit date:2020-04-25
Release date:2020-08-05
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (5.1 Å)
Cite:Structural mechanism of two gain-of-function cardiac and skeletal RyR mutations at an equivalent site by cryo-EM.
Sci Adv, 6, 2020
6WS0
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BU of 6ws0 by Molmil
Rational drug design of phenazopyridine derivatives as novel inhibitors of Rev1-CT
Descriptor: DNA polymerase zeta catalytic subunit, DNA repair protein REV1, Mitotic spindle assembly checkpoint protein MAD2B
Authors:McPherson, K.S, Korzhnev, D.M.
Deposit date:2020-04-30
Release date:2020-12-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Structure-Based Drug Design of Phenazopyridine Derivatives as Inhibitors of Rev1 Interactions in Translesion Synthesis.
Chemmedchem, 16, 2021
6WS5
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BU of 6ws5 by Molmil
Rational drug design of phenazopyridine derivatives as novel inhibitors of Rev1-CT
Descriptor: 3-[(Z)-(2,3-difluorophenyl)diazenyl]pyridine-2,6-diamine, DNA polymerase zeta catalytic subunit, DNA repair protein REV1, ...
Authors:McPherson, K.S, Korzhnev, D.M.
Deposit date:2020-04-30
Release date:2020-12-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.472 Å)
Cite:Structure-Based Drug Design of Phenazopyridine Derivatives as Inhibitors of Rev1 Interactions in Translesion Synthesis.
Chemmedchem, 16, 2021
6WXE
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BU of 6wxe by Molmil
Cryo-EM reconstruction of VP5*/VP8* assembly from rhesus rotavirus particles - Upright conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Intermediate capsid protein VP6, ...
Authors:Herrmann, T, Harrison, S.C, Jenni, S.
Deposit date:2020-05-10
Release date:2021-01-20
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Functional refolding of the penetration protein on a non-enveloped virus.
Nature, 590, 2021
6WXF
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BU of 6wxf by Molmil
Cryo-EM reconstruction of VP5*/VP8* assembly from rhesus rotavirus particles - Intermediate conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Intermediate capsid protein VP6, ...
Authors:Herrmann, T, Harrison, S.C, Jenni, S.
Deposit date:2020-05-10
Release date:2021-01-20
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Functional refolding of the penetration protein on a non-enveloped virus.
Nature, 590, 2021
6WXG
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BU of 6wxg by Molmil
Cryo-EM reconstruction of VP5*/VP8* assembly from rhesus rotavirus particles - Reversed conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Intermediate capsid protein VP6, ...
Authors:Herrmann, T, Harrison, S.C, Jenni, S.
Deposit date:2020-05-10
Release date:2021-01-20
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Functional refolding of the penetration protein on a non-enveloped virus.
Nature, 590, 2021
6X02
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BU of 6x02 by Molmil
Nup84-Nup133 (aa521-1157) from S. cerevisiae bound by VHH-SAN8
Descriptor: Nucleoporin NUP133, Nucleoporin NUP84, VHH-SAN8
Authors:Nordeen, S.A, Schwartz, T.U.
Deposit date:2020-05-15
Release date:2020-12-09
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (6.38 Å)
Cite:Yeast Nup84-Nup133 complex structure details flexibility and reveals conservation of the membrane anchoring ALPS motif.
Nat Commun, 11, 2020
6X03
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BU of 6x03 by Molmil
Nup84-Nup133 (aa521-1157) from S. cerevisiae bound by VHH-SAN8 and VHH-SAN9
Descriptor: Nucleoporin NUP133, Nucleoporin NUP84, VHH-SAN8, ...
Authors:Nordeen, S.A, Schwartz, T.U.
Deposit date:2020-05-15
Release date:2020-12-09
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (7.3 Å)
Cite:Yeast Nup84-Nup133 complex structure details flexibility and reveals conservation of the membrane anchoring ALPS motif.
Nat Commun, 11, 2020

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数据于2024-11-13公开中

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