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PDB形式変換不可の PDB エントリー
7B25
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DtxR-like iron-dependent regulator IdeR (Q43A variant) complexed with cobalt and its consensus DNA-binding sequence
分子名称: COBALT (II) ION, DtxR family iron (Metal) dependent repressor, consensus DNA-binding sequence
著者Maurer, D, Marcos-Torres, F.J, Griese, J.J.
登録日2020-11-26
公開日2021-03-03
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.34 Å)
主引用文献The bacterial iron sensor IdeR recognizes its DNA targets by indirect readout.
Nucleic Acids Res., 49, 2021
7B27
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RBD domain SARS-CoV2 in complex with neutralizing nanobody NM1230
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Surface glycoprotein, neutralizing nanobody NM1230
著者Ostertag, E, Zocher, G, Stehle, T.
登録日2020-11-26
公開日2021-05-12
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.902 Å)
主引用文献NeutrobodyPlex-monitoring SARS-CoV-2 neutralizing immune responses using nanobodies.
Embo Rep., 22, 2021
7B2T
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Crystal structure of Iripin-5 serpin from Ixodes ricinus
分子名称: CHLORIDE ION, MAGNESIUM ION, Serpin-4 precursor, ...
著者Kascakova, B, Kuta Smatanova, I.
登録日2020-11-27
公開日2021-10-06
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structural and biochemical characterization of the novel serpin Iripin-5 from Ixodes ricinus.
Acta Crystallogr D Struct Biol, 77, 2021
7B4I
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Thermostable omega transaminase PjTA-R6 variant W58G engineered for asymmetric synthesis of enantiopure bulky amines
分子名称: Aspartate aminotransferase family protein, PYRIDOXAL-5'-PHOSPHATE, SUCCINIC ACID
著者Capra, N, Rozeboom, H.J, Thunnissen, A.M.W.H, Janssen, D.B.
登録日2020-12-02
公開日2021-09-01
最終更新日2021-09-22
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Computational Redesign of an omega-Transaminase from Pseudomonas jessenii for Asymmetric Synthesis of Enantiopure Bulky Amines.
Acs Catalysis, 11, 2021
7B4O
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A Bacteroidetes bacterium CuZn-superoxide dismutase with ZnZn metalation
分子名称: Superoxide dismutase [Cu-Zn], ZINC ION
著者Wright, G.S.A.
登録日2020-12-02
公開日2021-06-02
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.41 Å)
主引用文献Bacterial Evolutionary Precursors of Eukaryotic Copper-Zinc Superoxide Dismutases.
Mol.Biol.Evol., 38, 2021
7B4P
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A Bacteroidetes bacterium CuZn-superoxide dismutase with CuZn metalation
分子名称: COPPER (II) ION, Superoxide dismutase [Cu-Zn], ZINC ION
著者Wright, G.S.A.
登録日2020-12-02
公開日2021-06-02
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Bacterial Evolutionary Precursors of Eukaryotic Copper-Zinc Superoxide Dismutases.
Mol.Biol.Evol., 38, 2021
7B58
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X-ray crystal structure of Sporosarcina pasteurii urease inhibited by Ag(PEt3)Cl determined at 1.72 Angstroms
分子名称: 1,2-ETHANEDIOL, NICKEL (II) ION, OXYGEN ATOM, ...
著者Mazzei, L, Cianci, M, Ciurli, S.
登録日2020-12-03
公開日2021-10-13
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.72 Å)
主引用文献Kinetic and structural analysis of the inactivation of urease by mixed-ligand phosphine halide Ag(I) complexes.
J.Inorg.Biochem., 218, 2021
7B59
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X-ray crystal structure of Sporosarcina pasteurii urease inhibited by Ag(PEt3)Br determined at 1.63 Angstroms
分子名称: 1,2-ETHANEDIOL, NICKEL (II) ION, OXYGEN ATOM, ...
著者Mazzei, L, Cianci, M, Ciurli, S.
登録日2020-12-03
公開日2021-10-13
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.63 Å)
主引用文献Kinetic and structural analysis of the inactivation of urease by mixed-ligand phosphine halide Ag(I) complexes.
J.Inorg.Biochem., 218, 2021
7B5A
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X-ray crystal structure of Sporosarcina pasteurii urease inhibited by Ag(PEt3)2NO3 determined at 1.97 Angstroms
分子名称: 1,2-ETHANEDIOL, NICKEL (II) ION, OXYGEN ATOM, ...
著者Mazzei, L, Cianci, M, Ciurli, S.
登録日2020-12-03
公開日2021-10-13
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.97 Å)
主引用文献Kinetic and structural analysis of the inactivation of urease by mixed-ligand phosphine halide Ag(I) complexes.
J.Inorg.Biochem., 218, 2021
7B5H
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Cryo-EM structure of the contractile injection system base plate from Anabaena PCC7120
分子名称: All3314 protein, All3315 protein, All3316 protein, ...
著者Eisenstein, F, Weiss, G.L, Pilhofer, M.
登録日2020-12-03
公開日2022-02-23
最終更新日2022-03-16
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Structure of a thylakoid-anchored contractile injection system in multicellular cyanobacteria.
Nat Microbiol, 7, 2022
7B5I
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Cryo-EM structure of the contractile injection system cap complex from Anabaena PCC7120
分子名称: All3324 protein, All3325 protein, All3326 protein, ...
著者Eisenstein, F, Weiss, G.L, Pilhofer, M.
登録日2020-12-03
公開日2022-02-23
最終更新日2022-03-16
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Structure of a thylakoid-anchored contractile injection system in multicellular cyanobacteria.
Nat Microbiol, 7, 2022
7B5K
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E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.
分子名称: 16S rRNA, 2-[[[(3~{R},5~{R})-3-azanyl-6-(3-azanylpropylamino)-5-oxidanyl-hexanoyl]amino]-methyl-amino]ethanoic acid, 23S rRNA, ...
著者Albers, S, Beckert, B, Matthies, M, Schuster, R, Riedner, M, Seuring, C, Sanyal, S, Torda, A, Wilson, N.D, Ignatova, Z.
登録日2020-12-03
公開日2021-05-26
最終更新日2024-04-24
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Harnessing evolutionarily flexibility in tRNAs to maximize nonsense suppression activities
Nat Commun, 2021
7B69
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BK Polyomavirus VP1 pentamer core(residues 26-299) mutant C104S
分子名称: DIMETHYL SULFOXIDE, Major capsid protein VP1
著者Osipov, E.M, Beelen, S, Strelkov, S.V.
登録日2020-12-07
公開日2022-06-22
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.474 Å)
主引用文献Discovery of novel druggable pockets on polyomavirus VP1 through crystallographic fragment-based screening to develop capsid assembly inhibitors.
Rsc Chem Biol, 3, 2022
7B6A
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BK Polyomavirus VP1 pentamer core (residues 30-299)
分子名称: CALCIUM ION, DIMETHYL SULFOXIDE, IODIDE ION, ...
著者Osipov, E.M, Munawar, A, Beelen, S, Strelkov, S.V.
登録日2020-12-07
公開日2022-06-22
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.44 Å)
主引用文献Discovery of novel druggable pockets on polyomavirus VP1 through crystallographic fragment-based screening to develop capsid assembly inhibitors.
Rsc Chem Biol, 3, 2022
7B6C
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BK Polyomavirus VP1 pentamer fusion with long C-terminal extended arm
分子名称: CALCIUM ION, DIMETHYL SULFOXIDE, Major capsid protein VP1,Major capsid protein VP1
著者Osipov, E.M, Beelen, S, Strelkov, S.V.
登録日2020-12-07
公開日2022-06-22
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.484 Å)
主引用文献Discovery of novel druggable pockets on polyomavirus VP1 through crystallographic fragment-based screening to develop capsid assembly inhibitors.
Rsc Chem Biol, 3, 2022
7B6G
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Crystal structure of MurE from E.coli in complex with Z1675346324
分子名称: DIMETHYL SULFOXIDE, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase, trans-3-[(2,6-dimethylpyrimidin-4-yl)(methyl)amino]cyclobutan-1-ol
著者Koekemoer, L, Steindel, M, Fairhead, M, Talon, R, Douangamath, A, Arrowsmith, C.H, Edwards, A.M, Bountra, C, von Delft, F, Krojer, T, Structural Genomics Consortium (SGC)
登録日2020-12-07
公開日2021-01-13
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.937 Å)
主引用文献Crystal structure of MurE from E.coli
To Be Published
7B6S
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Sheep Polyomavirus VP1 in complex with 10 mM Forssman antigen pentaose
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose-(1-3)-alpha-D-galactopyranose-(1-4)-beta-D-galactopyranose, ...
著者Rustmeier, N.H, Stehle, T.
登録日2020-12-08
公開日2022-09-21
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.923 Å)
主引用文献A novel and highly specific Forssman antigen-binding protein from sheep polyomavirus
Biorxiv, 2023
7B6T
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Sheep Polyomavirus VP1 in complex with 10 mM globo-N-tetraose
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-galactopyranose-(1-3)-alpha-D-galactopyranose, ...
著者Rustmeier, N.H, Stehle, T.
登録日2020-12-08
公開日2022-09-21
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.701 Å)
主引用文献A novel and highly specific Forssman antigen-binding protein from sheep polyomavirus
Biorxiv, 2023
7B6U
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Sheep Polyomavirus VP1 in complex with 5 mM Forssman antigen pentaose and 20 mM 6'-sialyllactosamine
分子名称: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose-(1-3)-alpha-D-galactopyranose-(1-4)-beta-D-galactopyranose, Capsid protein VP1, ...
著者Rustmeier, N.H, Stehle, T.
登録日2020-12-08
公開日2022-09-21
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.901 Å)
主引用文献A novel and highly specific Forssman antigen-binding protein from sheep polyomavirus
Biorxiv, 2023
7B6V
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Sheep Polyomavirus VP1 in complex with 5 mM Forssman antigen pentaose and 20 mM 3'-sialyllactosamine
分子名称: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose-(1-3)-alpha-D-galactopyranose-(1-4)-beta-D-galactopyranose, 2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose-(1-3)-alpha-D-galactopyranose-(1-4)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose, ...
著者Rustmeier, N.H, Stehle, T.
登録日2020-12-08
公開日2022-09-21
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.798 Å)
主引用文献A novel and highly specific Forssman antigen-binding protein from sheep polyomavirus
Biorxiv, 2023
7B6W
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Crystal structure of the human alpha1B adrenergic receptor in complex with inverse agonist (+)-cyclazosin
分子名称: Alpha-1B adrenergic receptor,alpha1B adrenergic receptor,Alpha-1B adrenergic receptor,alpha1B adrenergic receptor,Alpha-1B adrenergic receptor,alpha1B adrenergic receptor,Alpha-1B adrenergic receptor,alpha1B adrenergic receptor, [(4~{a}~{R},8~{a}~{S})-4-(4-azanyl-6,7-dimethoxy-quinazolin-2-yl)-2,3,4~{a},5,6,7,8,8~{a}-octahydroquinoxalin-1-yl]-(furan-2-yl)methanone
著者Deluigi, M, Morstein, L, Hilge, M, Schuster, M, Merklinger, L, Klipp, A, Scott, D.J, Plueckthun, A.
登録日2020-12-08
公開日2022-01-12
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.873 Å)
主引用文献Crystal structure of the alpha 1B -adrenergic receptor reveals molecular determinants of selective ligand recognition.
Nat Commun, 13, 2022
7B74
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Chimeric Streptavidin With A Dimerization Domain For Artificial Transfer Hydrogenation
分子名称: Streptavidin,Superoxide dismutase [Cu-Zn],Streptavidin, {N-(4-{[2-(amino-kappaN)ethyl]sulfamoyl-kappaN}phenyl)-5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanamide}(chloro)[(1,2,3,4,5-eta)-1,2,3,4,5-pentamethylcyclopentadienyl]iridium(III)
著者Igareta, N.V, Ward, T.R.
登録日2020-12-09
公開日2021-11-17
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Spiers Memorial Lecture: Shielding the active site: a streptavidin superoxide-dismutase chimera as a host protein for asymmetric transfer hydrogenation.
Faraday Disc.Chem.Soc, 2023
7B7D
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Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs
分子名称: 18S rRNA, 25S rRNA, 40S ribosomal protein S0-A, ...
著者Ranjan, N, Pochopien, A.A, Wu, C.C, Beckert, B, Blanchet, S, Green, R, Rodnina, M.V, Wilson, D.N.
登録日2020-12-10
公開日2021-03-10
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献eEF3 promotes late stages of tRNA translocation including E-tRNA release from the ribosome
To Be Published
7B9V
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Yeast C complex spliceosome at 2.8 Angstrom resolution with Prp18/Slu7 bound
分子名称: 5' exon of UBC4 mRNA, BJ4_G0027490.mRNA.1.CDS.1, BJ4_G0054360.mRNA.1.CDS.1, ...
著者Wilkinson, M.E, Fica, S.M, Galej, W.P, Nagai, K.
登録日2020-12-14
公開日2021-03-10
最終更新日2021-04-14
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Structural basis for conformational equilibrium of the catalytic spliceosome.
Mol.Cell, 81, 2021
7B9W
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Crystal structure of MurE from E.coli in complex with Z757284380
分子名称: 1,2-ETHANEDIOL, 3-Chloro-N-[2-(2,4-dioxo-1,3-thiazolidin-3-yl)ethyl]benzamide, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase
著者Koekemoer, L, Steindel, M, Fairhead, M, Arrowsmith, C.H, Edwards, A.M, Bountra, C, von Delft, F, Krojer, T, Structural Genomics Consortium (SGC)
登録日2020-12-14
公開日2021-01-20
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.82 Å)
主引用文献Crystal structure of MurE from E.coli
To Be Published

222415

件を2024-07-10に公開中

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