PDB形式変換不可の PDB エントリー

7AV5	Structure of EstD11 in complex with Fluorescein 分子名称: ACETATE ION, EstD11, FLUORESCIN, ... 著者 Miguel-Ruano, V, Rivera, I, Hermoso, J.A. 登録日 2020-11-04 公開日 2021-03-03 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.97 Å) 主引用文献 Biochemical and Structural Characterization of a novel thermophilic esterase EstD11 provide catalytic insights for the HSL family. Comput Struct Biotechnol J, 19, 2021
7AV8	Crystal Structure of the second bromodomain of Pleckstrin homology domain interacting protein (PHIP) in space group P21212 分子名称: PH-interacting protein 著者 Krojer, T, Talon, R, Fairhead, M, Szykowska, A, Burgess-Brown, N.A, Brennan, P.E, Arrowsmith, C.H, Edwards, A.M, Bountra, C, von Delft, F, Structural Genomics Consortium (SGC) 登録日 2020-11-04 公開日 2021-01-13 最終更新日 2024-08-07 実験手法 X-RAY DIFFRACTION (1.63 Å) 主引用文献 Crystal Structure of the second bromodomain of Pleckstrin homology domain interacting protein (PHIP) in space group P21212 To Be Published
7AV9	Crystal Structure of the second bromodomain of Pleckstrin homology domain interacting protein (PHIP) in space group C2 分子名称: 1,2-ETHANEDIOL, PH-interacting protein 著者 Krojer, T, Talon, R, Fairhead, M, Szykowska, A, Burgess-Brown, N.A, Brennan, P.E, Arrowsmith, C.H, Edwards, A.M, Bountra, C, von Delft, F. 登録日 2020-11-04 公開日 2021-01-13 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.23 Å) 主引用文献 Crystal Structure of the second bromodomain of Pleckstrin homology domain interacting protein (PHIP) in space group C2 To Be Published
7AVC	DoBi scaffold based on PIH1D1 N-terminal domain 分子名称: GLYCEROL, PIH1 domain-containing protein 1, SODIUM ION 著者 Kolenko, P, Pham, N.P, Pavlicek, J, Mikulecky, P, Schneider, B. 登録日 2020-11-05 公開日 2021-02-10 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.2 Å) 主引用文献 Protein Binder (ProBi) as a New Class of Structurally Robust Non-Antibody Protein Scaffold for Directed Evolution. Viruses, 13, 2021
7AX3	CryoEM structure of the super-constricted two-start dynamin 1 filament 分子名称: Dynamin-1, MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER 著者 Liu, J.W, Zhang, P.J. 登録日 2020-11-09 公開日 2021-11-10 実験手法 ELECTRON MICROSCOPY (3.74 Å) 主引用文献 CryoEM structure of the super-constricted two-start dynamin 1 filament. Nat Commun, 12, 2021
7AYY	Structure of the human 8-oxoguanine DNA Glycosylase hOGG1 in complex with activator TH10785 分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GLYCEROL, N-glycosylase/DNA lyase, ... 著者 Masuyer, G, Davies, J.R, Stenmark, P. 登録日 2020-11-13 公開日 2022-06-01 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Small-molecule activation of OGG1 increases oxidative DNA damage repair by gaining a new function. Science, 376, 2022
7AYZ	Structure of the mouse 8-oxoguanine DNA Glycosylase mOGG1 in complex with activator TH10785 分子名称: N-glycosylase/DNA lyase, NICKEL (II) ION, ~{N}-cyclohexyl-2-cyclopropyl-quinazolin-4-amine 著者 Masuyer, G, Davies, J.R, Stenmark, P. 登録日 2020-11-13 公開日 2022-06-01 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Small-molecule activation of OGG1 increases oxidative DNA damage repair by gaining a new function. Science, 376, 2022
7AZ0	Structure of the mouse 8-oxoguanine DNA Glycosylase mOGG1 in complex with TH12161 分子名称: 2-cyclopropyl-~{N}-(4-iodophenyl)quinazolin-4-amine, N-glycosylase/DNA lyase, NICKEL (II) ION 著者 Davies, J.R, Masuyer, G, Stenmark, P. 登録日 2020-11-13 公開日 2022-06-01 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Small-molecule activation of OGG1 increases oxidative DNA damage repair by gaining a new function. Science, 376, 2022
7AZO	70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977 分子名称: (2R,3S,4R,5R,7S,9S,10S,11R,12S,13R)-12-(((2R,4R,5S,6S)-4,5-dihydroxy-4,6-dimethyltetrahydro-2H-pyran-2-yl)oxy)-2-((S)-1-(((2R,3R,4R,5R,6R)-5-hydroxy-3,4-dimethoxy-6-methyltetrahydro-2H-pyran-2-yl)oxy)propan-2-yl)-10-(((2S,3R,4R,6R)-3-hydroxy-4-(methoxyamino)-6-methyltetrahydro-2H-pyran-2-yl)oxy)-3,5,7,9,11,13-hexamethyl-7-(((2-((2-nitrophenyl)sulfonamido)ethyl)carbamoyl)oxy)-6,14-dioxooxacyclotetradecan-4-yl 3-methylbutanoate, 16S rRNA, 23S rRNA, ... 著者 Jenner, L.B, Yusupov, M, Yusupova, G. 登録日 2020-11-17 公開日 2022-06-01 最終更新日 2025-03-19 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Discovery of natural-product-derived sequanamycins as potent oral anti-tuberculosis agents. Cell, 186, 2023
7AZS	70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569 分子名称: (2R,3S,4R,5R,7S,9S,10S,11R,12S,13R)-12-(((2R,4R,5S,6S)-4,5-dihydroxy-4,6-dimethyltetrahydro-2H-pyran-2-yl)oxy)-2-((S)-1-(((2R,3R,4R,5R,6R)-5-hydroxy-3,4-dimethoxy-6-methyltetrahydro-2H-pyran-2-yl)oxy)propan-2-yl)-10-(((2S,3R,6R,E)-3-hydroxy-4-(methoxyimino)-6-methyltetrahydro-2H-pyran-2-yl)oxy)-3,5,7,9,11,13-hexamethyl-7-(((2-(2-methyl-5-nitro-1H-imidazol-1-yl)ethyl)carbamoyl)oxy)-6,14-dioxooxacyclotetradecan-4-yl 3-methylbutanoate, 16S rRNA, 23S rRNA, ... 著者 Jenner, L.B, Yusupov, M, Yusupova, G, Rak, A. 登録日 2020-11-17 公開日 2022-06-08 最終更新日 2025-03-19 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Discovery of natural-product-derived sequanamycins as potent oral anti-tuberculosis agents. Cell, 186, 2023
7AZY	Context-specific inhibition of eukaryotic translation by macrolide antibiotics 分子名称: 25S ribosomal RNA, 5.8S ribosomal RNA, 5S ribosomal RNA, ... 著者 Koller, T.O, Wilson, D.N. 登録日 2020-11-17 公開日 2021-05-19 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (2.877 Å) 主引用文献 Context-specific action of macrolide antibiotics on the eukaryotic ribosome. Nat Commun, 12, 2021
7B04	Structure of Nitrite oxidoreductase (Nxr) from the anammox bacterium Kuenenia stuttgartiensis. 分子名称: CALCIUM ION, FE3-S4 CLUSTER, IRON/SULFUR CLUSTER, ... 著者 Moreno-Chicano, T, Dietl, A, Akram, M, Barends, T.R.M. 登録日 2020-11-18 公開日 2021-07-14 最終更新日 2024-06-19 実験手法 X-RAY DIFFRACTION (2.97 Å) 主引用文献 Structural and functional characterization of the intracellular filament-forming nitrite oxidoreductase multiprotein complex Nat Microbiol, 2021
7B0M	Sugar transaminase from a metagenome collected from troll oil field production water 分子名称: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Sugar aminotransferase, ... 著者 Littlechild, J.A, De Rose, S.A, Isupov, M.N, Sayer, C, Karki, S. 登録日 2020-11-20 公開日 2021-12-01 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.43 Å) 主引用文献 Sugar transaminases from hot environments To Be Published
7B0N	A 3.7-angstrom structure of Yarrowia lipolytica complex I with an R121M mutation in NUCM. 分子名称: 1,2-Distearoyl-sn-glycerophosphoethanolamine, Acyl carrier protein, CARDIOLIPIN, ... 著者 Hirst, J, Grba, D. 登録日 2020-11-20 公開日 2021-03-10 最終更新日 2024-10-09 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 A conserved arginine residue is critical for stabilizing the N2 FeS cluster in mitochondrial complex I. J.Biol.Chem., 296, 2021
7B0U	Stressosome complex from Listeria innocua 分子名称: RsbR protein, RsbS protein 著者 Miksys, A, Fu, L, Madej, M.G, Ziegler, C. 登録日 2020-11-22 公開日 2021-12-01 最終更新日 2024-11-13 実験手法 ELECTRON MICROSCOPY (3.86 Å) 主引用文献 Molecular insights into intra-complex signal transmission during stressosome activation. Commun Biol, 5, 2022
7B1Y	DtxR-like iron-dependent regulator IdeR complexed with cobalt and its consensus DNA-binding sequence 分子名称: COBALT (II) ION, DtxR family iron (Metal) dependent repressor, consensus DNA-binding sequence 著者 Maurer, D, Marcos-Torres, F.J, Griese, J.J. 登録日 2020-11-25 公開日 2021-03-03 最終更新日 2024-11-13 実験手法 X-RAY DIFFRACTION (2.12 Å) 主引用文献 The bacterial iron sensor IdeR recognizes its DNA targets by indirect readout. Nucleic Acids Res., 49, 2021
7B20	DtxR-like iron-dependent regulator IdeR complexed with iron and its consensus DNA-binding sequence 分子名称: DtxR family iron (Metal) dependent repressor, FE (II) ION, consensus DNA-binding sequence 著者 Maurer, D, Marcos-Torres, F.J, Griese, J.J. 登録日 2020-11-25 公開日 2021-03-03 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.18 Å) 主引用文献 The bacterial iron sensor IdeR recognizes its DNA targets by indirect readout. Nucleic Acids Res., 49, 2021
7B21	The X183 domain from Cellvibrio japonicus Cbp2D 分子名称: 1,2-ETHANEDIOL, Carbohydrate binding protein, putative, ... 著者 Branch, J, Hemsworth, G.R. 登録日 2020-11-25 公開日 2021-07-21 最終更新日 2024-10-16 実験手法 X-RAY DIFFRACTION (1.2 Å) 主引用文献 C-type cytochrome-initiated reduction of bacterial lytic polysaccharide monooxygenases. Biochem.J., 478, 2021
7B23	DtxR-like iron-dependent regulator IdeR complexed with cobalt and the SACE_2689 promoter DNA-binding sequence 分子名称: COBALT (II) ION, DtxR family iron (Metal) dependent repressor, SACE_2689 promoter DNA-binding sequence 著者 Maurer, D, Marcos-Torres, F.J, Griese, J.J. 登録日 2020-11-26 公開日 2021-03-03 最終更新日 2024-10-23 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 The bacterial iron sensor IdeR recognizes its DNA targets by indirect readout. Nucleic Acids Res., 49, 2021
7B24	DtxR-like iron-dependent regulator IdeR (P39G variant) complexed with cobalt and its consensus DNA-binding sequence 分子名称: COBALT (II) ION, DtxR family iron (Metal) dependent repressor, consensus DNA-binding sequence 著者 Maurer, D, Marcos-Torres, F.J, Griese, J.J. 登録日 2020-11-26 公開日 2021-03-03 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 The bacterial iron sensor IdeR recognizes its DNA targets by indirect readout. Nucleic Acids Res., 49, 2021
7B25	DtxR-like iron-dependent regulator IdeR (Q43A variant) complexed with cobalt and its consensus DNA-binding sequence 分子名称: COBALT (II) ION, DtxR family iron (Metal) dependent repressor, consensus DNA-binding sequence 著者 Maurer, D, Marcos-Torres, F.J, Griese, J.J. 登録日 2020-11-26 公開日 2021-03-03 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.34 Å) 主引用文献 The bacterial iron sensor IdeR recognizes its DNA targets by indirect readout. Nucleic Acids Res., 49, 2021
7B27	RBD domain SARS-CoV2 in complex with neutralizing nanobody NM1230 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Surface glycoprotein, neutralizing nanobody NM1230 著者 Ostertag, E, Zocher, G, Stehle, T. 登録日 2020-11-26 公開日 2021-05-12 最終更新日 2024-10-16 実験手法 X-RAY DIFFRACTION (2.902 Å) 主引用文献 NeutrobodyPlex-monitoring SARS-CoV-2 neutralizing immune responses using nanobodies. Embo Rep., 22, 2021
7B2T	Crystal structure of Iripin-5 serpin from Ixodes ricinus 分子名称: CHLORIDE ION, MAGNESIUM ION, Serpin-4 precursor, ... 著者 Kascakova, B, Kuta Smatanova, I. 登録日 2020-11-27 公開日 2021-10-06 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Structural and biochemical characterization of the novel serpin Iripin-5 from Ixodes ricinus. Acta Crystallogr D Struct Biol, 77, 2021
7B4I	Thermostable omega transaminase PjTA-R6 variant W58G engineered for asymmetric synthesis of enantiopure bulky amines 分子名称: Aspartate aminotransferase family protein, PYRIDOXAL-5'-PHOSPHATE, SUCCINIC ACID 著者 Capra, N, Rozeboom, H.J, Thunnissen, A.M.W.H, Janssen, D.B. 登録日 2020-12-02 公開日 2021-09-01 最終更新日 2021-09-22 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Computational Redesign of an omega-Transaminase from Pseudomonas jessenii for Asymmetric Synthesis of Enantiopure Bulky Amines. Acs Catalysis, 11, 2021
7B4O	A Bacteroidetes bacterium CuZn-superoxide dismutase with ZnZn metalation 分子名称: Superoxide dismutase [Cu-Zn], ZINC ION 著者 Wright, G.S.A. 登録日 2020-12-02 公開日 2021-06-02 最終更新日 2024-11-20 実験手法 X-RAY DIFFRACTION (1.41 Å) 主引用文献 Bacterial Evolutionary Precursors of Eukaryotic Copper-Zinc Superoxide Dismutases. Mol.Biol.Evol., 38, 2021

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