PDB形式変換不可の PDB エントリー

6Y69	Cryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinX 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Wieland, M, Wilson, D.N. 登録日 2020-02-26 公開日 2020-07-01 最終更新日 2024-10-16 実験手法 ELECTRON MICROSCOPY (2.86 Å) 主引用文献 Tetracenomycin X inhibits translation by binding within the ribosomal exit tunnel. Nat.Chem.Biol., 16, 2020
6Y6X	Tetracenomycin X bound to the human ribosome 分子名称: 28S ribosomal RNA, 5.8S ribosomal RNA, 5S ribosomal RNA, ... 著者 Buschauer, R, Cheng, J, Berninghausen, O, Beckmann, R, Wilson, D.N. 登録日 2020-02-27 公開日 2020-07-08 最終更新日 2023-11-08 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 Tetracenomycin X inhibits translation by binding within the ribosomal exit tunnel. Nat.Chem.Biol., 16, 2020
6Y7M	Crystal structure of the complex resulting from the reaction between the SARS-CoV main protease and tert-butyl (1-((S)-3-cyclohexyl-1-(((S)-4-(cyclopropylamino)-3,4-dioxo-1-((S)-2-oxopyrrolidin-3-yl)butan-2-yl)amino)-1-oxopropan-2-yl)-2-oxo-1,2-dihydropyridin-3-yl)carbamate 分子名称: 3C-like proteinase, DIMETHYL SULFOXIDE, ~{tert}-butyl ~{N}-[1-[(2~{S})-3-cyclohexyl-1-[[(2~{S},3~{R})-4-(cyclopropylamino)-3-oxidanyl-4-oxidanylidene-1-[(3~{R})-2-oxidanylidene-3,4-dihydropyrrol-3-yl]butan-2-yl]amino]-1-oxidanylidene-propan-2-yl]-2-oxidanylidene-pyridin-3-yl]carbamate 著者 Zhang, L, Lin, D, Hilgenfeld, R. 登録日 2020-03-01 公開日 2020-03-18 最終更新日 2024-10-23 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Crystal structure of SARS-CoV-2 main protease provides a basis for design of improved alpha-ketoamide inhibitors. Science, 368, 2020
6Y7Q	Crystal Structure of the N-terminal PAS domain from the hERG3 Potassium Channel 分子名称: 1,2-ETHANEDIOL, GLYCEROL, Potassium voltage-gated channel subfamily H member 7 著者 Cresser-Brown, J, Raven, E, Moody, P. 登録日 2020-03-02 公開日 2020-08-12 最終更新日 2024-10-23 実験手法 X-RAY DIFFRACTION (1.39 Å) 主引用文献 Discovery of a heme-binding domain in a neuronal voltage-gated potassium channel. J.Biol.Chem., 295, 2020
6Y8G	selenomethionine derivative of ferulic acid esterase (FAE) 分子名称: CADMIUM ION, Endo-1,4-beta-xylanase Y, GLYCEROL 著者 von Stetten, D, Mueller-Dieckmann, C, Carpentier, P, Flot, D. 登録日 2020-03-04 公開日 2020-05-20 最終更新日 2024-10-16 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 ID30A-3 (MASSIF-3) - a beamline for macromolecular crystallography at the ESRF with a small intense beam. J.Synchrotron Radiat., 27, 2020
6Y8K	Crystal structure of CD137 in complex with the cyclic peptide BCY10916 分子名称: 1,1',1''-(1,3,5-triazinane-1,3,5-triyl)tripropan-1-one, 1,2-ETHANEDIOL, ACETATE ION, ... 著者 Upadhyaya, P, Kublin, J, Dods, R, Kristensson, J, Lahdenranta, J, Kleyman, M, Repash, E, Ma, J, Mudd, G, Van Rietschoten, K, Haines, E, Harrison, H, Beswick, P, Chen, L, McDonnell, K, Battula, S, Hurov, K, Keen, N. 登録日 2020-03-05 公開日 2021-02-03 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (2.011 Å) 主引用文献 Anticancer immunity induced by a synthetic tumor-targeted CD137 agonist. J Immunother Cancer, 9, 2021
6Y8X	Structure of Atlantic Herring (Clupea Harengus) Phosphoglucomutase 5 (PGM5) 分子名称: CALCIUM ION, Phosphoglucomutase 5, SODIUM ION 著者 Gustafsson, R, Eckhard, U, Selmer, M. 登録日 2020-03-06 公開日 2020-12-16 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Structure and Characterization of Phosphoglucomutase 5 from Atlantic and Baltic Herring-An Inactive Enzyme with Intact Substrate Binding. Biomolecules, 10, 2020
6Y9I	Structure of apo Chimpanzee Polyomavirus VP1 分子名称: MAGNESIUM ION, Major Capsid Protein VP1 著者 Stroh, L.J, Rustmeier, N.H, Stehle, T. 登録日 2020-03-09 公開日 2020-07-08 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structural Basis and Evolution of Glycan Receptor Specificities within the Polyomavirus Family. Mbio, 11, 2020
6Y9K	Esterase EST8 with transacylase activity 分子名称: Esterase Est8 著者 Palm, G.J, Lammers, M, Berndt, L. 登録日 2020-03-09 公開日 2020-07-29 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.298 Å) 主引用文献 Sequence-Based Prediction of Promiscuous Acyltransferase Activity in Hydrolases. Angew.Chem.Int.Ed.Engl., 59, 2020
6YAB	Crystal structure of PnrA from S. pneumoniae in complex with uridine 分子名称: ACETATE ION, CACODYLATE ION, Lipoprotein, ... 著者 Batuecas, M.T, Hermoso, J.A. 登録日 2020-03-12 公開日 2021-02-10 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal Structure and Pathophysiological Role of the Pneumococcal Nucleoside-binding Protein PnrA. J.Mol.Biol., 433, 2021
6YAJ	Split gene transketolase, inactive beta4 tetramer 分子名称: 1,2-ETHANEDIOL, C-terminal chain of split transketolase from Carboxydothermus hydrogenoformans, DI(HYDROXYETHYL)ETHER, ... 著者 Isupov, M.N, Littlechild, J.A, James, P. 登録日 2020-03-12 公開日 2020-11-25 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 A 'Split-Gene' Transketolase From the Hyper-Thermophilic Bacterium Carboxydothermus hydrogenoformans : Structure and Biochemical Characterization. Front Microbiol, 11, 2020
6YAK	Split gene transketolase, active alpha2beta2 heterotetramer 分子名称: (2S)-2-hydroxybutanedioic acid, 2-[3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-2H-1,3-thiazol-5-yl]ethyl phosphono hydrogen phosphate, C-terminal component of the split chain transketolase, ... 著者 Isupov, M.N, Littlechild, J.A, James, P. 登録日 2020-03-12 公開日 2020-11-25 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.34 Å) 主引用文献 A 'Split-Gene' Transketolase From the Hyper-Thermophilic Bacterium Carboxydothermus hydrogenoformans : Structure and Biochemical Characterization. Front Microbiol, 11, 2020
6YAM	Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA 分子名称: 18S ribosomal RNA, 40S ribosomal protein eS1, 40S ribosomal protein eS10, ... 著者 Bochler, A, Simonetti, A, Guca, E, Hashem, Y. 登録日 2020-03-12 公開日 2020-04-08 最終更新日 2024-10-16 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Structural Insights into the Mammalian Late-Stage Initiation Complexes. Cell Rep, 31, 2020
6YAX	Crystal structure of CD32b (Fc Gamma Receptor IIb) in complex with Human IgG1 Fab fragment (5C05) 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 5C05 F(ab) heavy chain, ... 著者 Fisher, H, Tews, I, Orr, C. 登録日 2020-03-14 公開日 2021-10-06 最終更新日 2024-11-13 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Crystal structure of CD32b (Fc Gamma Receptor IIb) in complex with Human IgG1 Fab fragment (5C05) To Be Published
6YB4	Crystal structure of human ATAD2 bromodomain in complex with N-(4-bromo-3-(3-methylpyrrolidin-1-yl)sulfonyl)phenyl)-2-(-4-cyclopropyl-4-methyl-2,5-dioxoimidazolidin-1-yl)acetamide 分子名称: 1,2-ETHANEDIOL, ATPase family AAA domain-containing protein 2, SULFATE ION, ... 著者 Chung, C. 登録日 2020-03-15 公開日 2020-05-06 最終更新日 2024-05-15 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Optimization of Potent ATAD2 and CECR2 Bromodomain Inhibitors with an Atypical Binding Mode. J.Med.Chem., 63, 2020
6YD2	X-ray structure of furin in complex with the canavanine-based inhibitor 4-aminomethyl-phenylacetyl-canavanine-Tle-Arg-Amba 分子名称: 4-aminomethyl-phenylacetyl-canavanine-Tle-Arg-Amba, CALCIUM ION, CHLORIDE ION, ... 著者 Dahms, S.O. 登録日 2020-03-20 公開日 2021-02-17 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 The Basicity Makes the Difference: Improved Canavanine-Derived Inhibitors of the Proprotein Convertase Furin. Acs Med.Chem.Lett., 12, 2021
6YD3	X-ray structure of furin in complex with the canavanine derived inhibitor 4-guanidinomethyl-phenylacetyl-Canavanine-Tle-Arg-Amba 分子名称: 4-guanidinomethyl-phenylacetyl-Canavanine-Tle-Arg-Amba, CALCIUM ION, CHLORIDE ION, ... 著者 Dahms, S.O. 登録日 2020-03-20 公開日 2021-02-17 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 The Basicity Makes the Difference: Improved Canavanine-Derived Inhibitors of the Proprotein Convertase Furin. Acs Med.Chem.Lett., 12, 2021
6YDP	55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST) 分子名称: 12S rRNA, 28S ribosomal protein S16, mitochondrial, ... 著者 Kummer, E, Ban, N. 登録日 2020-03-20 公開日 2020-07-15 最終更新日 2024-10-23 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Structural insights into mammalian mitochondrial translation elongation catalyzed by mtEFG1. Embo J., 39, 2020
6YDV	Crystal Structure of the Jmjc Domain of Human JMJD1B in complex with FM001511a from the DSPL fragment library 分子名称: CHLORIDE ION, JMJD1B protein, MANGANESE (II) ION, ... 著者 Snee, M, Nowak, R, Johansson, C, Burgess-Brown, N.A, Arrowsmith, C.H, Bountra, C, Edwards, A.M, Oppermann, U. 登録日 2020-03-21 公開日 2020-05-06 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.07 Å) 主引用文献 Crystal Structure of the Jmjc Domain of Human JMJD1B in complex with FM001511a from the DSPL fragment library To Be Published
6YDW	55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST) 分子名称: 12S rRNA, 28S ribosomal protein S16, mitochondrial, ... 著者 Kummer, E, Ban, N. 登録日 2020-03-21 公開日 2020-07-15 最終更新日 2024-10-16 実験手法 ELECTRON MICROSCOPY (4.2 Å) 主引用文献 Structural insights into mammalian mitochondrial translation elongation catalyzed by mtEFG1. Embo J., 39, 2020
6YEF	70S initiation complex with assigned rRNA modifications from Staphylococcus aureus 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S11, ... 著者 Fatkhullin, B, Golubev, A, Khusainov, I, Yusupova, G, Yusupov, M. 登録日 2020-03-24 公開日 2021-01-27 最終更新日 2025-03-12 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Cryo-EM structure of the ribosome functional complex of the human pathogen Staphylococcus aureus at 3.2 angstrom resolution. Febs Lett., 594, 2020
6YF7	Virus-like particle of bacteriophage AC 分子名称: Coat protein 著者 Rumnieks, J, Kalnins, G, Sisovs, M, Lieknina, I, Tars, K. 登録日 2020-03-26 公開日 2020-09-02 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (3.4 Å) 主引用文献 Three-dimensional structure of 22 uncultured ssRNA bacteriophages: Flexibility of the coat protein fold and variations in particle shapes. Sci Adv, 6, 2020
6YF9	Virus-like particle of bacteriophage AVE002 分子名称: coat protein 著者 Rumnieks, J, Kalnins, G, Sisovs, M, Lieknina, I, Tars, K. 登録日 2020-03-26 公開日 2020-09-02 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (3.196 Å) 主引用文献 Three-dimensional structure of 22 uncultured ssRNA bacteriophages: Flexibility of the coat protein fold and variations in particle shapes. Sci Adv, 6, 2020
6YFA	Virus-like particle of bacteriophage AVE015 分子名称: CALCIUM ION, coat protein 著者 Rumnieks, J, Kalnins, G, Sisovs, M, Lieknina, I, Tars, K. 登録日 2020-03-26 公開日 2020-09-02 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Three-dimensional structure of 22 uncultured ssRNA bacteriophages: Flexibility of the coat protein fold and variations in particle shapes. Sci Adv, 6, 2020
6YFB	Virus-like particle of bacteriophage AVE016 分子名称: coat protein 著者 Rumnieks, J, Kalnins, G, Sisovs, M, Lieknina, I, Tars, K. 登録日 2020-03-26 公開日 2020-09-02 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (3.59 Å) 主引用文献 Three-dimensional structure of 22 uncultured ssRNA bacteriophages: Flexibility of the coat protein fold and variations in particle shapes. Sci Adv, 6, 2020

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