PDB形式変換不可の PDB エントリー

6UUA	E. coli sigma-S transcription initiation complex with a mismatching CTP ("Fresh" crystal soaked with CTP for 2 hours) 分子名称: CYTIDINE-5'-TRIPHOSPHATE, DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... 著者 Zuo, Y, De, S, Steitz, T.A. 登録日 2019-10-30 公開日 2020-08-26 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (4.002 Å) 主引用文献 Structural Insights into Transcription Initiation from De Novo RNA Synthesis to Transitioning into Elongation. Iscience, 23, 2020
6UUB	E. coli sigma-S transcription initiation complex with a mismatching UTP ("Fresh" crystal soaked with UTP for 2 hours) 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Zuo, Y, De, S, Steitz, T.A. 登録日 2019-10-30 公開日 2020-08-26 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (3.955 Å) 主引用文献 Structural Insights into Transcription Initiation from De Novo RNA Synthesis to Transitioning into Elongation. Iscience, 23, 2020
6UUC	E. coli sigma-S transcription initiation complex with a 3-nt RNA and a mismatching ATP ("Fresh" crystal soaked with ATP for 2 hours) 分子名称: ADENOSINE-5'-TRIPHOSPHATE, DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... 著者 Zuo, Y, De, S, Steitz, T.A. 登録日 2019-10-30 公開日 2020-08-26 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (4.096 Å) 主引用文献 Structural Insights into Transcription Initiation from De Novo RNA Synthesis to Transitioning into Elongation. Iscience, 23, 2020
6UWI	Crystal structure of the Clostridium difficile translocase CDTb 分子名称: ADP-ribosyltransferase binding component, CALCIUM ION 著者 Pozharski, E. 登録日 2019-11-05 公開日 2020-01-22 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (3.7 Å) 主引用文献 Structure of the cell-binding component of theClostridium difficilebinary toxin reveals a di-heptamer macromolecular assembly. Proc.Natl.Acad.Sci.USA, 117, 2020
6UZ7	K.lactis 80S ribosome with p/PE tRNA and eIF5B 分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0, ... 著者 Fernandez, I.S, Huang, B.Y. 登録日 2019-11-14 公開日 2020-01-15 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Long-range interdomain communications in eIF5B regulate GTP hydrolysis and translation initiation. Proc.Natl.Acad.Sci.USA, 117, 2020
6UZC	Portal vertex structure of bacteriophage T4 分子名称: Major capsid protein, Portal protein 著者 Fang, Q, Fokine, A, Rao, V.B. 登録日 2019-11-14 公開日 2020-04-29 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (4.5 Å) 主引用文献 Structural morphing in a symmetry-mismatched viral vertex. Nat Commun, 11, 2020
6V10	genome-containing AAV8 particles 分子名称: Capsid protein, DNA (5'-D(*CP*A)-3') 著者 Mietzsch, M, Agbandje-McKenna, M. 登録日 2019-11-19 公開日 2019-12-11 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (3.77 Å) 主引用文献 Comparative Analysis of the Capsid Structures of AAVrh.10, AAVrh.39, and AAV8. J.Virol., 94, 2020
6V12	Empty AAV8 particles 分子名称: Capsid protein 著者 Mietzsch, M, Agbandje-McKenna, M. 登録日 2019-11-19 公開日 2019-12-11 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3.08 Å) 主引用文献 Comparative Analysis of the Capsid Structures of AAVrh.10, AAVrh.39, and AAV8. J.Virol., 94, 2020
6V1G	Genome-containing AAVrh.10 分子名称: Capsid protein VP1, DNA (5'-D(*CP*A)-3') 著者 Mietzsch, M, Agbandje-McKenna, M. 登録日 2019-11-20 公開日 2019-12-11 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (2.98 Å) 主引用文献 Comparative Analysis of the Capsid Structures of AAVrh.10, AAVrh.39, and AAV8. J.Virol., 94, 2020
6V1T	Empty AAVrh.39 particle 分子名称: Capsid protein VP1 著者 Mietzsch, M, Agbandje-McKenna, M. 登録日 2019-11-21 公開日 2019-12-11 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3.39 Å) 主引用文献 Comparative Analysis of the Capsid Structures of AAVrh.10, AAVrh.39, and AAV8. J.Virol., 94, 2020
6V1Z	genome-containing AAVrh.39 particles 分子名称: Capsid protein VP1, DNA (5'-D(*CP*A)-3') 著者 Mietzsch, M, Agbandje-McKenna, M. 登録日 2019-11-21 公開日 2019-12-11 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (3.58 Å) 主引用文献 Comparative Analysis of the Capsid Structures of AAVrh.10, AAVrh.39, and AAV8. J.Virol., 94, 2020
6V39	Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA 分子名称: 16s Ribosomal RNA, 23s ribosomal RNA, 30S ribosomal protein S10, ... 著者 Morgan, C.E, Yu, E.W. 登録日 2019-11-25 公開日 2020-02-05 実験手法 ELECTRON MICROSCOPY (3.04 Å) 主引用文献 Cryo-electron Microscopy Structure of the Acinetobacter baumannii 70S Ribosome and Implications for New Antibiotic Development. Mbio, 11, 2020
6V3A	Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA 分子名称: 16s Ribosomal RNA, 23s ribosomal RNA, 30S ribosomal protein S10, ... 著者 Morgan, C.E, Yu, E.W. 登録日 2019-11-25 公開日 2020-02-05 実験手法 ELECTRON MICROSCOPY (2.82 Å) 主引用文献 Cryo-electron Microscopy Structure of the Acinetobacter baumannii 70S Ribosome and Implications for New Antibiotic Development. Mbio, 11, 2020
6V3B	Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S in Empty state 分子名称: 16s Ribosomal RNA, 23s ribosomal RNA, 30S ribosomal protein S10, ... 著者 Morgan, C.E, Yu, E.W. 登録日 2019-11-25 公開日 2020-02-05 実験手法 ELECTRON MICROSCOPY (2.91 Å) 主引用文献 Cryo-electron Microscopy Structure of the Acinetobacter baumannii 70S Ribosome and Implications for New Antibiotic Development. Mbio, 11, 2020
6V3D	Cryo-EM structure of the Acinetobacter baumannii Ribosome: 50S subunit 分子名称: 23s ribosomal RNA, 50S ribosomal protein L13, 50S ribosomal protein L14, ... 著者 Morgan, C.E, Yu, E.W. 登録日 2019-11-25 公開日 2020-02-05 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (2.95 Å) 主引用文献 Cryo-electron Microscopy Structure of the Acinetobacter baumannii 70S Ribosome and Implications for New Antibiotic Development. Mbio, 11, 2020
6V3E	Cryo-EM structure of the Acinetobacter baumannii Ribosome: 30S subunit 分子名称: 16s Ribosomal RNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Morgan, C.E, Yu, E.W. 登録日 2019-11-25 公開日 2020-02-05 実験手法 ELECTRON MICROSCOPY (4.4 Å) 主引用文献 Cryo-electron Microscopy Structure of the Acinetobacter baumannii 70S Ribosome and Implications for New Antibiotic Development. Mbio, 11, 2020
6V41	crystal structure of CDY1 chromodomain bound to H3K9me3 分子名称: Histone H3.1 Peptide, Testis-specific chromodomain protein Y 1, UNKNOWN ATOM OR ION 著者 Qin, S, Tempel, W, Walker, J.R, Arrowsmith, C.H, Bountra, C, Edwards, A.M, Min, J, Structural Genomics Consortium, Structural Genomics Consortium (SGC) 登録日 2019-11-27 公開日 2019-12-25 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.603 Å) 主引用文献 Structural Basis for the Binding Selectivity of Human CDY Chromodomains. Cell Chem Biol, 27, 2020
6V6S	Structure of the native human gamma-tubulin ring complex 分子名称: ADENOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-DIPHOSPHATE, Gamma-tubulin complex component 2, ... 著者 Wieczorek, M, Urnavicius, L, Ti, S, Molloy, K.R, Chait, B.T, Kapoor, T.M. 登録日 2019-12-05 公開日 2020-01-01 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (4.3 Å) 主引用文献 Asymmetric Molecular Architecture of the Human gamma-Tubulin Ring Complex. Cell, 180, 2020
6V8I	Composite atomic model of the Staphylococcus aureus phage 80alpha baseplate 分子名称: Distal Tail Protein, gp58, FE (III) ION, ... 著者 Kizziah, J.L, Dokland, T. 登録日 2019-12-11 公開日 2020-03-04 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Structure of the host cell recognition and penetration machinery of a Staphylococcus aureus bacteriophage. Plos Pathog., 16, 2020
6V8W	CDYL2 chromodomain in complex with a synthetic peptide 分子名称: Chromodomain Y-like protein 2, IVA-PHE-ALA-PHE-5T3-SER-NH2, UNKNOWN ATOM OR ION 著者 Dong, C, Tempel, W, James, L.I, Lamb, K.N, Bountra, C, Edwards, A.M, Arrowsmith, C.H, Min, J, Structural Genomics Consortium, Structural Genomics Consortium (SGC) 登録日 2019-12-12 公開日 2020-01-15 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structural Basis for the Binding Selectivity of Human CDY Chromodomains. Cell Chem Biol, 27, 2020
6V9T	Tudor domain of TDRD3 in complex with a small molecule 分子名称: 4-methyl-2,3,4,5,6,7-hexahydrodicyclopenta[b,e]pyridin-8(1H)-imine, Tudor domain-containing protein 3, UNKNOWN ATOM OR ION 著者 Li, W, Tempel, W, Arrowsmith, C.H, Bountra, C, Edwards, A.M, Min, J, Structural Genomics Consortium (SGC) 登録日 2019-12-16 公開日 2019-12-25 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.154 Å) 主引用文献 A small molecule antagonist of SMN disrupts the interaction between SMN and RNAP II. Nat Commun, 13, 2022
6VE7	The inner junction complex of Chlamydomonas reinhardtii doublet microtubule 分子名称: Cilia- and flagella-associated protein 20, FAP276, FAP52, ... 著者 Khalifa, A.A.Z, Ichikawa, M, Bui, K.H. 登録日 2019-12-30 公開日 2020-02-05 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 The inner junction complex of the cilia is an interaction hub that involves tubulin post-translational modifications. Elife, 9, 2020
6VGS	Alpha-ketoisovalerate decarboxylase (KivD) from Lactococcus lactis, thermostable mutant 分子名称: Alpha-keto acid decarboxylase, MAGNESIUM ION, THIAMINE DIPHOSPHATE 著者 Chan, S, Korman, T.P, Sawaya, M.R, Bowie, J.U. 登録日 2020-01-08 公開日 2020-08-05 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Isobutanol production freed from biological limits using synthetic biochemistry. Nat Commun, 11, 2020
6VHO	Glycoside hydrolase family 16 endo-glucanase from Bacteroides ovatus in complex with G4G4G3G-NHCOCH2Br 分子名称: Glycosyl hydrolase family 16, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-3)-N-acetyl-beta-D-glucopyranosylamine 著者 Tamura, K, Brumer, H, van Petegem, F. 登録日 2020-01-10 公開日 2021-01-13 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.148 Å) 主引用文献 Orthogonal Active-Site Labels for Mixed-Linkage endo-beta-Glucanases. Acs Chem.Biol., 16, 2021
6VLZ	Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI) 分子名称: 12s rRNA, 16s rRNA, 28S ribosomal protein S10, ... 著者 Sharma, M.R, Koripella, R.K, Agrawal, R.K. 登録日 2020-01-27 公開日 2020-08-05 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (2.97 Å) 主引用文献 Structures of the human mitochondrial ribosome bound to EF-G1 reveal distinct features of mitochondrial translation elongation. Nat Commun, 11, 2020

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