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PDB形式変換不可の PDB エントリー
9C8J
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X-ray crystal structure of AmpC beta-lactamase with inhibitor
分子名称: AmpC Beta-lactamase, N-(1-acetyl-2,3-dihydro-1H-indol-4-yl)-3-chloro-2-hydroxybenzene-1-sulfonamide
著者Liu, F, Shoichet, B.K.
登録日2024-06-12
公開日2024-06-19
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Improved correlations with score, hit-rate, and affinity as docking library and testing scale increase
To Be Published
9CAI
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BU of 9cai by Molmil
High-resolution C. elegans 80S ribosome structure - class 2
分子名称: 18S rRNA, 28S rRNA, 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione, ...
著者Sehgal, E, Serrao, V.H.B, Arribere, J.
登録日2024-06-17
公開日2024-09-11
実験手法ELECTRON MICROSCOPY (2.59 Å)
主引用文献High-Resolution Reconstruction of a C. elegans Ribosome Sheds Light on Evolutionary Dynamics and Tissue Specificity.
Rna, 2024
9CBF
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Crystal Structure of Danio rerio Histone Deacetylase 10 in Complex with m-Aminomethyl Phenylthioketone
分子名称: 1,2-ETHANEDIOL, 1-[3-(aminomethyl)phenyl]-2-sulfanylethan-1-one, PHOSPHATE ION, ...
著者Goulart Stollmaier, J, Christianson, D.W.
登録日2024-06-19
公開日2024-09-11
実験手法X-RAY DIFFRACTION (2.26 Å)
主引用文献Design, Synthesis and Structural Evaluation of Acetylated Phenylthioketone Inhibitors of HDAC10
To Be Published
9CBG
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Crystal Structure of Danio rerio Histone Deacetylase 10 in Complex with m-Aminoethyl Phenylthioketone
分子名称: 1,2-ETHANEDIOL, 1-[3-(2-aminoethyl)phenyl]-2-sulfanylethan-1-one, PHOSPHATE ION, ...
著者Goulart Stollmaier, J, Christianson, D.W.
登録日2024-06-19
公開日2024-09-11
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Design, Synthesis, and Structural Evaluation of Acetylated Phenylthioketone Inhibitors of HDAC10
To be Published
9CBH
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Crystal Structure of Danio rerio Histone Deacetylase 10 in Complex with p-Aminomethyl Phenylthioketone
分子名称: 1-[4-(aminomethyl)phenyl]-2-sulfanylethan-1-one, PHOSPHATE ION, POTASSIUM ION, ...
著者Goulart Stollmaier, J, Christianson, D.W.
登録日2024-06-19
公開日2024-09-11
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Design, Synthesis, and Structural Evaluation of Acetylated Phenylthioketone Inhibitors of HDAC10
To be Published
9CBI
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Crystal Structure of Danio rerio Histone Deacetylase 10 in Complex with p-Aminoethyl Phenylthioketone
分子名称: 1,2-ETHANEDIOL, 1-[4-(2-aminoethyl)phenyl]-2-sulfanylethan-1-one, PHOSPHATE ION, ...
著者Goulart Stollmaier, J, Christianson, D.W.
登録日2024-06-19
公開日2024-09-11
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Design, Synthesis, and Structural Evaluation of Acetylated Phenylthioketone Inhibitors of HDAC10
To be Published
9CBJ
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Crystal Structure of Danio rerio Histone Deacetylase 10 in Complex with p-Aminopropyl Phenylthioketone
分子名称: 1,2-ETHANEDIOL, 1-[4-(3-aminopropyl)phenyl]-2-sulfanylethan-1-one, PHOSPHATE ION, ...
著者Goulart Stollmaier, J, Christianson, D.W.
登録日2024-06-19
公開日2024-09-11
実験手法X-RAY DIFFRACTION (2.48 Å)
主引用文献Design, Synthesis, and Structural Evaluation of Acetylated Phenylthioketone Inhibitors of HDAC10
To be Published
9CBK
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Crystal Structure of Danio rerio Histone Deacetylase 6 in Complex with p-Aminomethyl Phenylthioketone
分子名称: 1,2-ETHANEDIOL, 1-[4-(aminomethyl)phenyl]-2-sulfanylethan-1-one, Hdac6 protein, ...
著者Goulart Stollmaier, J, Watson, P.R, Christianson, D.W.
登録日2024-06-19
公開日2024-09-11
実験手法X-RAY DIFFRACTION (1.46 Å)
主引用文献Design, Synthesis, and Structural Evaluation of Acetylated Phenylthioketone Inhibitors of HDAC10
To be Published
9CC9
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Dodecameric state of the NRC4 resistosome
分子名称: ADENOSINE-5'-TRIPHOSPHATE, NLR-required for cell death 4
著者Liu, F, Yang, Z, Nogales, E, Staskawicz, B.J.
登録日2024-06-21
公開日2024-09-11
実験手法ELECTRON MICROSCOPY (3.54 Å)
主引用文献Activation of the helper NRC4 immune receptor forms a hexameric resistosome.
Cell, 2024
9CGM
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The Structure of Spiroplasma Virus 4
分子名称: Capsid protein VP1, DNA binding protein ORF8
著者Mietzsch, M, McKenna, R.
登録日2024-06-30
公開日2024-07-17
最終更新日2024-08-07
実験手法ELECTRON MICROSCOPY (2.52 Å)
主引用文献The Structure of Spiroplasma Virus 4 : Exploring the Capsid Diversity of the Microviridae.
Viruses, 16, 2024
9CIW
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Penguinpox cGAMP PDE H72A mutant in complex with 2'3'-cGAMP
分子名称: Penguinpox cGAMP PDE, [(2~{R},3~{R},4~{R},5~{S})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl [(2~{R},3~{R},4~{S},5~{R})-2-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-5-(hydroxymethyl)-4-oxidanyl-oxolan-3-yl] hydrogen phosphate
著者Hobbs, S.J, Nomburg, J, Doudna, J.A, Kranzusch, P.J.
登録日2024-07-05
公開日2024-09-04
最終更新日2024-09-11
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Animal and bacterial viruses share conserved mechanisms of immune evasion.
Cell, 2024
9CL9
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WT 12C IM fraction, B-b3 with RluB bound
分子名称: 23S rRNA, Large ribosomal subunit protein bL20, Large ribosomal subunit protein bL21, ...
著者Lee, J, Sheng, K, Williamson, J.R.
登録日2024-07-10
公開日2024-07-24
実験手法ELECTRON MICROSCOPY (5.04 Å)
主引用文献50S ribosome assembly intermediates at low temperature reveal bound RluB
To Be Published
9CMZ
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Crystal Structure of Cdk-related protein kinase 6 (PK6) from Plasmodium falciparum in complex with inhibitor KG2-051
分子名称: (4-{[5-chloro-4-(5-chlorothiophen-2-yl)pyrimidin-2-yl]amino}phenyl)[4-(pyrrolidin-1-yl)piperidin-1-yl]methanone, CHLORIDE ION, Protein kinase 6, ...
著者Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
登録日2024-07-15
公開日2024-07-24
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Crystal Structure of Cdk-related protein kinase 6 (PK6) from Plasmodium falciparum in complex with inhibitor KG2-051
To be published
9CPG
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Structures of small molecules bound to RNA repeat expansions that cause Huntington's disease-like 2 and myotonic dystrophy type 1
分子名称: 4-carbamimidamidophenyl 4-carbamimidamidobenzoate, RNA (5'-R(*GP*AP*CP*AP*GP*CP*UP*GP*CP*UP*GP*UP*C)-3')
著者Chen, J.L, Taghavi, A, Disney, M.D, Fountain, M.A, Childs-Disney, J.L.
登録日2024-07-18
公開日2024-08-07
実験手法SOLUTION NMR
主引用文献Structures of small molecules bound to RNA repeat expansions that cause Huntington's disease-like 2 and myotonic dystrophy type 1.
Bioorg.Med.Chem.Lett., 2024
9CPI
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Structures of small molecules bound to RNA repeat expansions that cause Huntington's disease-like 2 and myotonic dystrophy type 1
分子名称: 4-[1-(2-aminoethyl)-4,5-dihydro-1H-imidazol-2-yl]-N-[4-(4,5-dihydro-1H-imidazol-2-yl)phenyl]benzamide, RNA (5'-R(*GP*AP*CP*AP*GP*CP*UP*GP*CP*UP*GP*UP*C)-3')
著者Chen, J.L, Taghavi, A, Disney, M.D, Fountain, M.A, Childs-Disney, J.L.
登録日2024-07-18
公開日2024-08-07
最終更新日2024-08-14
実験手法SOLUTION NMR
主引用文献NMR structures of small molecules bound to a model of a CUG RNA repeat expansion.
Bioorg.Med.Chem.Lett., 111, 2024
9CSG
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Human Serum Albumin Bound to Cerastecin Compound 5e
分子名称: 2-(4-butylbenzene-1-sulfonamido)-5-(4-{3-carboxy-4-[4-(2-methoxyethyl)benzene-1-sulfonamido]anilino}-4-oxobutanamido)benzoic acid, Albumin, MYRISTIC ACID
著者Hruza, A, Klein, D.J, Ishchenko, A.
登録日2024-07-23
公開日2024-09-04
実験手法X-RAY DIFFRACTION (1.914 Å)
主引用文献Cerastecin Inhibition of the Lipooligosaccharide Transporter MsbA to Combat Acinetobacter baumannii : From Screening Impurity to In Vivo Efficacy.
J.Med.Chem., 2024
9CSI
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A. baumannii MsbA Bound to Cerastecin Compound 5
分子名称: 3,3'-[(1,4-dioxobutane-1,4-diyl)bis(azanediyl)]bis[(4-butylbenzene-1-sulfonamido)benzoic acid], Lipid A export ATP-binding/permease protein MsbA, MAGNESIUM ION, ...
著者Klein, D.J, Ishchenko, A, Soisson, S, Cheng, R, Hennig, M.
登録日2024-07-23
公開日2024-09-04
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Cerastecin Inhibition of the Lipooligosaccharide Transporter MsbA to Combat Acinetobacter baumannii : From Screening Impurity to In Vivo Efficacy.
J.Med.Chem., 2024
9CTH
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Preliminary map of the Prothrombin-prothrombinase complex on nano discs
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Activated Factor V (FVa) heavy chain, Activated Factor V (FVa) light chain, ...
著者Stojanovski, B.M, Mohammed, B.M, Di Cera, E.
登録日2024-07-25
公開日2024-08-07
最終更新日2024-08-14
実験手法ELECTRON MICROSCOPY (6.47 Å)
主引用文献The Prothrombin-Prothrombinase Interaction.
Subcell Biochem, 104, 2024
9CUO
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Crystal structure of CRBN with compound 3
分子名称: (3S)-3-(3-methyl-2-oxo-2,3-dihydro-1H-1,3-benzimidazol-1-yl)piperidine-2,6-dione, 1,2-ETHANEDIOL, Protein cereblon, ...
著者Zheng, X, Ji, N, Campbell, V, Slavin, A, Zhu, X, Chen, D, Rong, H, Enerson, B, Mayo, M, Sharma, K, Browne, C.M, Klaus, C.R, Li, H, Massa, G, McDonald, A.A, Shi, Y, Sintchak, M, Skouras, S, Walther, D.M, Yuan, K, Zhang, Y, Kelleher, J, Guang, L, Luo, X, Mainolfi, N, Weiss, M.M.
登録日2024-07-26
公開日2024-08-28
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Discovery of KT-474─a Potent, Selective, and Orally Bioavailable IRAK4 Degrader for the Treatment of Autoimmune Diseases.
J.Med.Chem., 2024
9CV0
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Bufavirus 1 at pH 7.4
分子名称: VP1
著者Gulkis, M.C, McKenna, R, Bennett, A.D.
登録日2024-07-27
公開日2024-08-28
最終更新日2024-09-11
実験手法ELECTRON MICROSCOPY (2.84 Å)
主引用文献Structural Characterization of Human Bufavirus 1: Receptor Binding and Endosomal pH-Induced Changes.
Viruses, 16, 2024
9CV9
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Bufavirus 1 at pH 4.0
分子名称: VP1
著者Gulkis, M.C, McKenna, R, Bennett, A.D.
登録日2024-07-28
公開日2024-08-28
最終更新日2024-09-11
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Structural Characterization of Human Bufavirus 1: Receptor Binding and Endosomal pH-Induced Changes.
Viruses, 16, 2024
9CWS
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Bufavirus 1 at pH 2.6
分子名称: VP1
著者Gulkis, M.C, McKenna, R, Bennett, A.D.
登録日2024-07-30
公開日2024-08-21
最終更新日2024-09-11
実験手法ELECTRON MICROSCOPY (2.73 Å)
主引用文献Structural Characterization of Human Bufavirus 1: Receptor Binding and Endosomal pH-Induced Changes.
Viruses, 16, 2024
9D3E
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Cryo-EM structure of CCR6 bound by SQA1 and OXM2
分子名称: 4-[[3,4-bis(oxidanylidene)-2-[[(1~{R})-1-(4-propan-2-ylfuran-2-yl)propyl]amino]cyclobuten-1-yl]amino]-~{N},~{N}-dimethyl-3-oxidanyl-pyridine-2-carboxamide, CHOLESTEROL, Human CCR6, ...
著者Wasilko, D.J, Wu, H.
登録日2024-08-09
公開日2024-09-11
実験手法ELECTRON MICROSCOPY (3.02 Å)
主引用文献Structural basis for CCR6 modulation by allosteric antagonists.
Nat Commun, 15, 2024
9D3G
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Cryo-EM structure of CCR6 bound by SQA1 and OXM1
分子名称: 1-(4-chlorophenyl)-N-{[(2R)-4-(2,3-dihydro-1H-inden-2-yl)-5-oxomorpholin-2-yl]methyl}cyclopropane-1-carboxamide, 4-[[3,4-bis(oxidanylidene)-2-[[(1~{R})-1-(4-propan-2-ylfuran-2-yl)propyl]amino]cyclobuten-1-yl]amino]-~{N},~{N}-dimethyl-3-oxidanyl-pyridine-2-carboxamide, CCR6, ...
著者Wasilko, D.J, Wu, H.
登録日2024-08-10
公開日2024-09-11
実験手法ELECTRON MICROSCOPY (3.26 Å)
主引用文献Structural basis for CCR6 modulation by allosteric antagonists.
Nat Commun, 15, 2024
9D5D
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Crystal Structure of Blood Coagulation Factor VIII C2 Domain Mutant L2251A/L2252A
分子名称: Factor VIIIa light chain
著者Avery, N.G, Childers, K.C, Spiegel, P.C.
登録日2024-08-13
公開日2024-09-04
実験手法X-RAY DIFFRACTION (1.83 Å)
主引用文献Biophysical characterization of blood coagulation factor VIII binding to lipid nanodiscs that mimic activated platelet surfaces
To Be Published

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件を2024-09-11に公開中

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