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PDB形式変換不可の PDB エントリー
8ZHD
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SARS-CoV-2 spike trimer (6P) in complex with two R1-26 Fabs
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of R1-26 Fab, ...
著者Yan, Q, Gao, X, Liu, B, Hou, R, He, P, Li, Z, Chen, Q, Wang, J, He, J, Chen, L, Zhao, J, Xiong, X.
登録日2024-05-10
公開日2024-08-21
実験手法ELECTRON MICROSCOPY (3.41 Å)
主引用文献Antibodies utilizing VL6-57 light chains target a convergent cryptic epitope on SARS-CoV-2 spike protein helping to drive the genesis of Omicron variants
To Be Published
8ZHH
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BU of 8zhh by Molmil
SARS-CoV-2 spike trimer (6P) in complex with two H18 Fabs
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of H18 Fab, ...
著者Yan, Q, Gao, X, Liu, B, Hou, R, He, P, Li, Z, Chen, Q, Wang, J, He, J, Chen, L, Zhao, J, Xiong, X.
登録日2024-05-10
公開日2024-08-21
実験手法ELECTRON MICROSCOPY (5.55 Å)
主引用文献Antibodies utilizing VL6-57 light chains target a convergent cryptic epitope on SARS-CoV-2 spike protein helping to drive the genesis of Omicron variants
To Be Published
8ZHI
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BU of 8zhi by Molmil
SARS-CoV-2 spike trimer (6P) in complex with three H18 Fabs
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of H18 Fab, ...
著者Yan, Q, Gao, X, Liu, B, Hou, R, He, P, Li, Z, Chen, Q, Wang, J, He, J, Chen, L, Zhao, J, Xiong, X.
登録日2024-05-11
公開日2024-08-21
実験手法ELECTRON MICROSCOPY (6.05 Å)
主引用文献Antibodies utilizing VL6-57 light chains target a convergent cryptic epitope on SARS-CoV-2 spike protein helping to drive the genesis of Omicron variants
To Be Published
8ZHJ
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BU of 8zhj by Molmil
SARS-CoV-2 spike trimer (6P) in complex with three H18 Fabs, head-to-head aggregate (C1 symmetry)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of H18 Fab, ...
著者Yan, Q, Gao, X, Liu, B, Hou, R, He, P, Li, Z, Chen, Q, Wang, J, He, J, Chen, L, Zhao, J, Xiong, X.
登録日2024-05-11
公開日2024-08-21
実験手法ELECTRON MICROSCOPY (8.45 Å)
主引用文献Antibodies utilizing VL6-57 light chains target a convergent cryptic epitope on SARS-CoV-2 spike protein helping to drive the genesis of Omicron variants
To Be Published
8ZHL
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BU of 8zhl by Molmil
SARS-CoV-2 spike trimer (6P) in complex with two H18 and two R1-32 Fabs
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of H18 Fab, ...
著者Yan, Q, Gao, X, Liu, B, Hou, R, He, P, Li, Z, Chen, Q, Wang, J, He, J, Chen, L, Zhao, J, Xiong, X.
登録日2024-05-11
公開日2024-08-21
実験手法ELECTRON MICROSCOPY (3.96 Å)
主引用文献Antibodies utilizing VL6-57 light chains target a convergent cryptic epitope on SARS-CoV-2 spike protein helping to drive the genesis of Omicron variants
To Be Published
8ZHM
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BU of 8zhm by Molmil
SARS-CoV-2 spike trimer (6P) in complex with three H18 and three R1-32 Fabs
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of H18 Fab, ...
著者Yan, Q, Gao, X, Liu, B, Hou, R, He, P, Li, Z, Chen, Q, Wang, J, He, J, Chen, L, Zhao, J, Xiong, X.
登録日2024-05-11
公開日2024-08-21
実験手法ELECTRON MICROSCOPY (3.39 Å)
主引用文献Antibodies utilizing VL6-57 light chains target a convergent cryptic epitope on SARS-CoV-2 spike protein helping to drive the genesis of Omicron variants
To Be Published
8ZJ2
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BU of 8zj2 by Molmil
Cryo-EM structure of the RhoG/DOCK5/ELMO1/Rac1 complex
分子名称: Dedicator of cytokinesis protein 5, Engulfment and cell motility protein 1, GUANOSINE-5'-TRIPHOSPHATE, ...
著者Kukimoto-Niino, M, Katsura, K, Ishizuka-Katsura, Y, Mishima-Tsumagari, C, Yonemochi, M, Inoue, M, Nakagawa, R, Kaushik, R, Zhang, K.Y.J, Shirouzu, M.
登録日2024-05-14
公開日2024-06-26
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (4.66 Å)
主引用文献RhoG facilitates a conformational transition in the guanine nucleotide exchange factor complex DOCK5/ELMO1 to an open state.
J.Biol.Chem., 300, 2024
8ZLI
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BU of 8zli by Molmil
BTA-2-bound E46K alpha-synuclein fibrils
分子名称: Alpha-synuclein, ~{N},~{N}-dimethyl-4-(6-methyl-1,3-benzothiazol-2-yl)aniline
著者Liu, K.E, Tao, Y.Q, Li, D, Liu, C.
登録日2024-05-20
公開日2024-09-11
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Binding adaptability of chemical ligands to polymorphic alpha-synuclein amyloid fibrils.
Proc.Natl.Acad.Sci.USA, 121, 2024
8ZM1
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BU of 8zm1 by Molmil
Structure of human pyruvate dehydrogenase kinase 2 complexed with compound 6
分子名称: (5~{R})-5-propan-2-ylindeno[1,2-b]pyridin-5-ol, [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial
著者Akai, S, Orita, T, Nomura, A, Adachi, T.
登録日2024-05-22
公開日2024-06-19
最終更新日2024-07-03
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Design and synthesis of novel fluorene derivatives as inhibitors of pyruvate dehydrogenase kinase.
Bioorg.Med.Chem.Lett., 109, 2024
8ZM2
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Structure of human pyruvate dehydrogenase kinase 2 complexed with compound 16
分子名称: [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial, methyl (9~{R})-9-oxidanyl-9-(trifluoromethyl)fluorene-4-carboxylate
著者Akai, S, Orita, T, Nomura, A, Adachi, T.
登録日2024-05-22
公開日2024-06-19
最終更新日2024-07-03
実験手法X-RAY DIFFRACTION (2.34 Å)
主引用文献Design and synthesis of novel fluorene derivatives as inhibitors of pyruvate dehydrogenase kinase.
Bioorg.Med.Chem.Lett., 109, 2024
8ZMF
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BU of 8zmf by Molmil
Crystal structure of an inverse agonist antipsychotic drug derivative-bound 5-HT2C
分子名称: 1-[(4-fluorophenyl)methyl]-1-[(8~{S})-5-methyl-5-azaspiro[2.5]octan-8-yl]-3-[[4-(2-methylpropoxy)phenyl]methyl]urea, 5-hydroxytryptamine receptor 2C,Soluble cytochrome b562
著者Oguma, T, Asada, H, Sekiguchi, Y, Imono, M, Iwata, S, Kusakabe, K.
登録日2024-05-23
公開日2024-08-28
最終更新日2024-09-04
実験手法X-RAY DIFFRACTION (3.6 Å)
主引用文献Dual 5-HT 2A and 5-HT 2C Receptor Inverse Agonist That Affords In Vivo Antipsychotic Efficacy with Minimal hERG Inhibition for the Treatment of Dementia-Related Psychosis.
J.Med.Chem., 67, 2024
8ZMG
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BU of 8zmg by Molmil
Crystal structure of an inverse agonist antipsychotic drug pimavanserin-bound 5-HT2A
分子名称: 5-hydroxytryptamine receptor 2A,Soluble cytochrome b562, Pimavanserin
著者Oguma, T, Asada, H, Sekiguchi, Y, Imono, M, Iwata, S, Kusakabe, K.
登録日2024-05-23
公開日2024-08-28
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (3.4 Å)
主引用文献Dual 5-HT 2A and 5-HT 2C Receptor Inverse Agonist That Affords In Vivo Antipsychotic Efficacy with Minimal hERG Inhibition for the Treatment of Dementia-Related Psychosis.
J.Med.Chem., 67, 2024
8ZMR
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BU of 8zmr by Molmil
Vesamicol-bound VAChT
分子名称: Maltose/maltodextrin-binding periplasmic protein,Vesicular acetylcholine transporter,DARPinoff7, vesamicol
著者Zhang, Z, Zhang, Y, Dai, F, Zhang, Y.X, Lee, C.-H.
登録日2024-05-23
公開日2024-06-19
最終更新日2024-09-18
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Structural insights into VAChT neurotransmitter recognition and inhibition.
Cell Res., 34, 2024
8ZNR
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BU of 8znr by Molmil
Cryo-EM structure of Cas8-HNH system at ssDNA-bound state
分子名称: DNA (35-MER), RNA (56-MER), protein structure
著者Zhang, H, Zhu, H, Li, X, Liu, Y.
登録日2024-05-28
公開日2024-10-02
最終更新日2024-10-09
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Structural basis for the type I-F Cas8-HNH system.
Embo J., 2024
8ZP1
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BU of 8zp1 by Molmil
Cryo-EM structure of human norepinephrine transporter NET bound with reboxetine in an outward-open state at a resolution of 2.5 angstrom
分子名称: (2~{S})-2-[(~{S})-(2-ethoxyphenoxy)-phenyl-methyl]morpholine, CHLORIDE ION, Nb_BB4, ...
著者Song, A.L, Wu, X.D.
登録日2024-05-29
公開日2024-09-11
最終更新日2024-09-18
実験手法ELECTRON MICROSCOPY (2.5 Å)
主引用文献Mechanistic insights of substrate transport and inhibitor binding revealed by high-resolution structures of human norepinephrine transporter.
Cell Res., 2024
8ZP2
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Cryo-EM structure of human norepinephrine transporter NET bound with atomoxetine in an outward-open state at a resolution of 2.4 angstrom
分子名称: (3R)-N-methyl-3-(2-methylphenoxy)-3-phenyl-propan-1-amine, CHLORIDE ION, Nb_BB4, ...
著者Song, A.L, Wu, X.D.
登録日2024-05-29
公開日2024-09-11
最終更新日2024-09-18
実験手法ELECTRON MICROSCOPY (2.4 Å)
主引用文献Mechanistic insights of substrate transport and inhibitor binding revealed by high-resolution structures of human norepinephrine transporter.
Cell Res., 2024
8ZR5
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BU of 8zr5 by Molmil
Cryo-EM Structure of GPR119-Gs-Firuglipel complex
分子名称: 4-[5-[(1~{R})-1-(4-cyclopropylcarbonylphenoxy)propyl]-1,2,4-oxadiazol-3-yl]-2-fluoranyl-~{N}-[(2~{R})-1-oxidanylpropan-2-yl]benzamide, Glucose-dependent insulinotropic receptor, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
著者Wong, T.S, Zeng, Z.C, Xiong, T.T, Gan, S.Y, Qiu, C, Du, Y.
登録日2024-06-04
公開日2024-06-19
実験手法ELECTRON MICROSCOPY (3.31 Å)
主引用文献Cryo-EM structure of GPR119-Gs complex
To Be Published
8ZRK
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Cryo-EM structure of GPR119-Gs Complex with small molecule agonist GSK-1292263
分子名称: 5-[4-[[6-(4-methylsulfonylphenyl)pyridin-3-yl]oxymethyl]piperidin-1-yl]-3-propan-2-yl-1,2,4-oxadiazole, Glucose-dependent insulinotropic receptor, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
著者Wong, T.S, Xiong, T.T, Zeng, Z.C, Gan, S.Y, Qiu, C, Du, Y.
登録日2024-06-04
公開日2024-06-19
実験手法ELECTRON MICROSCOPY (2.82 Å)
主引用文献Cryo-EM structure of GPR119-Gs complex
To be published
8ZSS
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BU of 8zss by Molmil
Cryo-EM structure of the RO5263397-bound hTAAR1-Gs complex
分子名称: (4~{S})-4-(3-fluoranyl-2-methyl-phenyl)-1,3-oxazolidin-2-amine, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
著者Jiang, K.X, Zheng, Y, Xu, F.
登録日2024-06-05
公開日2024-07-24
実験手法ELECTRON MICROSCOPY (3.07 Å)
主引用文献The versatile binding landscape of the TAAR1 pocket for LSD and other antipsychotic drug molecules.
Cell Rep, 43, 2024
8ZSV
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BU of 8zsv by Molmil
Cryo-EM structure of the RO5263397-bound mTAAR1-Gs complex
分子名称: (4~{S})-4-(3-fluoranyl-2-methyl-phenyl)-1,3-oxazolidin-2-amine, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
著者Jiang, K.X, Zheng, Y, Xu, F.
登録日2024-06-05
公開日2024-07-24
実験手法ELECTRON MICROSCOPY (2.96 Å)
主引用文献The versatile binding landscape of the TAAR1 pocket for LSD and other antipsychotic drug molecules.
Cell Rep, 43, 2024
8ZTX
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Crystal Structure of Human Myt1 Kinase domain Bounded with compound 6b
分子名称: 2-azanyl-3-(2,6-dimethyl-3-oxidanyl-phenyl)-5-pyridin-4-yl-benzamide, Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase
著者Zhang, Z.M, Zhou, Z.Q.
登録日2024-06-07
公開日2024-09-11
最終更新日2024-09-25
実験手法X-RAY DIFFRACTION (1.70033228795 Å)
主引用文献Structure-Based Drug Design of 2-Amino-[1,1'-biphenyl]-3-carboxamide Derivatives as Selective PKMYT1 Inhibitors for the Treatment of CCNE1 -Amplified Breast Cancer.
J.Med.Chem., 67, 2024
8ZU2
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Crystal Structure of Human Myt1 Kinase domain Bounded with compound 8g
分子名称: 2-azanyl-5-[2-(1,4-diazepan-1-yl)pyridin-4-yl]-3-(2,6-dimethyl-3-oxidanyl-phenyl)benzamide, GLYCINE, Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase
著者Zhang, Z.M, Zhou, Z.Q.
登録日2024-06-07
公開日2024-09-11
最終更新日2024-09-25
実験手法X-RAY DIFFRACTION (1.79888582046 Å)
主引用文献Structure-Based Drug Design of 2-Amino-[1,1'-biphenyl]-3-carboxamide Derivatives as Selective PKMYT1 Inhibitors for the Treatment of CCNE1 -Amplified Breast Cancer.
J.Med.Chem., 67, 2024
8ZUD
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BU of 8zud by Molmil
Crystal Structure of Human Myt1 Kinase domain Bounded with compound 8f
分子名称: 2-azanyl-3-(2,6-dimethyl-3-oxidanyl-phenyl)-5-(2-morpholin-4-ylpyridin-4-yl)benzamide, Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase
著者Zhang, Z.M, Zhou, Z.Q.
登録日2024-06-08
公開日2024-09-11
最終更新日2024-09-25
実験手法X-RAY DIFFRACTION (1.5051008788 Å)
主引用文献Structure-Based Drug Design of 2-Amino-[1,1'-biphenyl]-3-carboxamide Derivatives as Selective PKMYT1 Inhibitors for the Treatment of CCNE1 -Amplified Breast Cancer.
J.Med.Chem., 67, 2024
8ZUL
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BU of 8zul by Molmil
Crystal Structure of Human Myt1 Kinase domain Bounded with compound 8m
分子名称: 2-azanyl-5-[2-[(3~{R})-3-azanylpyrrolidin-1-yl]pyridin-4-yl]-3-(2,6-dimethyl-3-oxidanyl-phenyl)benzamide, Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase
著者Zhang, Z.M, Zhou, Z.Q.
登録日2024-06-09
公開日2024-09-11
最終更新日2024-09-25
実験手法X-RAY DIFFRACTION (1.80026162696 Å)
主引用文献Structure-Based Drug Design of 2-Amino-[1,1'-biphenyl]-3-carboxamide Derivatives as Selective PKMYT1 Inhibitors for the Treatment of CCNE1 -Amplified Breast Cancer.
J.Med.Chem., 67, 2024
8ZYP
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BU of 8zyp by Molmil
Cryo-EM Structure of E-4031-bound hERG Channel
分子名称: Potassium voltage-gated channel subfamily H member 2, ~{N}-[4-[1-[2-(6-methylpyridin-2-yl)ethyl]piperidin-4-yl]carbonylphenyl]methanesulfonamide
著者Miyashita, Y, Moriya, T, Kato, T, Kawasaki, M, Yasuda, Y, Adachi, N, Suzuki, K, Ogasawara, S, Saito, T, Senda, T, Murata, T.
登録日2024-06-18
公開日2024-09-18
最終更新日2024-10-09
実験手法ELECTRON MICROSCOPY (3.19 Å)
主引用文献Improved higher resolution cryo-EM structures reveal the binding modes of hERG channel inhibitors.
Structure, 2024

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件を2024-10-09に公開中

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