PDB形式変換不可の PDB エントリー

8QR1	Cryo-EM structure of the human Tip60 complex 分子名称: Actin, cytoplasmic 1, N-terminally processed, ... 著者 Li, C, Smirnova, E, Schnitzler, C, Crucifix, C, Concordet, J.P, Brion, A, Poterszman, A, Schultz, P, Papai, G, Ben-Shem, A. 登録日 2023-10-06 公開日 2024-08-07 実験手法 ELECTRON MICROSCOPY (2.4 Å) 主引用文献 Structure of human TIP60-C histone exchange and acetyltransferase complex Nature, 2024
8QRE	Cholera holotoxin (wildtype) 分子名称: ACETATE ION, Cholera enterotoxin subunit A, Cholera enterotoxin subunit B, ... 著者 Mojica, N, Cordara, G, Krengel, U. 登録日 2023-10-06 公開日 2024-05-15 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Using Vibrio natriegens for High-Yield Production of Challenging Expression Targets and for Protein Perdeuteration. Biochemistry, 63, 2024
8QRT	Acyl-ACP thioesterase from Lemna paucicostata in complex with a spirolactam 分子名称: (5~{S})-7-[[2,6-bis(fluoranyl)phenyl]methyl]-3-(3-methylthiophen-2-yl)-1-oxa-2,7-diazaspiro[4.4]non-2-en-6-one, Acyl-acp thioesterase 著者 Freigang, J. 登録日 2023-10-09 公開日 2024-02-21 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Discovery and Optimization of Spirocyclic Lactams that Inhibit Acyl-ACP Thioesterase. Pest Manag Sci, 2024
8QS0	Acyl-ACP thioesterase from Lemna paucicostata in complex with a spirolactam 分子名称: (5~{S})-9-[[2,6-bis(fluoranyl)phenyl]methyl]-3-(3-methylthiophen-2-yl)-1-oxa-2,9-diazaspiro[4.5]dec-2-en-10-one, Acyl-acp thioesterase 著者 Freigang, J. 登録日 2023-10-10 公開日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Discovery and Optimization of Spirocyclic Lactams that Inhibit Acyl-ACP Thioesterase. Pest Manag Sci, 2024
8QSJ	Human mitoribosomal large subunit assembly intermediate 2 with GTPBP7 分子名称: 16S rRNA, 39S ribosomal protein L10, mitochondrial, ... 著者 Ritter, C, Nguyen, T.G, Kummer, E. 登録日 2023-10-10 公開日 2023-12-13 最終更新日 2024-06-26 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Structural insights into the role of GTPBP10 in the RNA maturation of the mitoribosome. Nat Commun, 14, 2023
8QSQ	Locally refined SARS-CoV-2 BA-2.86 Spike receptor binding domain (RBD) complexed with angiotensin converting enzyme 2 (ACE2) 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, Spike protein S2' 著者 Ren, J, Stuart, D.I, Duyvesteyn, H.M.E. 登録日 2023-10-11 公開日 2024-05-08 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 A structure-function analysis shows SARS-CoV-2 BA.2.86 balances antibody escape and ACE2 affinity. Cell Rep Med, 5, 2024
8QV2	Structure of the native y-Tubulin Ring Complex (yTuRC) capping microtubule minus ends at the spindle pole body 分子名称: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, Spindle pole body component, ... 著者 Dendooven, T, Yatskevich, S, Burt, A, Bellini, D, Kilmartin, J, Barford, D. 登録日 2023-10-17 公開日 2024-04-24 最終更新日 2024-07-31 実験手法 ELECTRON MICROSCOPY (9.2 Å) 主引用文献 Structure of the native gamma-tubulin ring complex capping spindle microtubules. Nat.Struct.Mol.Biol., 31, 2024
8QV3	Structure of the y-Tubulin Small Complex (yTuSC) as part of the native y-Tubulin Ring Complex (yTuRC) capping microtubule minus ends at the spindle pole body 分子名称: GUANOSINE-5'-TRIPHOSPHATE, Spindle pole body component, Spindle pole body component 110, ... 著者 Dendooven, T, Yatskevich, S, Burt, A, Bellini, D, Kilmartin, J, Barford, D. 登録日 2023-10-17 公開日 2024-04-24 最終更新日 2024-07-31 実験手法 ELECTRON MICROSCOPY (8.2 Å) 主引用文献 Structure of the native gamma-tubulin ring complex capping spindle microtubules. Nat.Struct.Mol.Biol., 31, 2024
8QXD	Cryo-EM structure of the cross-exon pre-B complex 分子名称: 116 kDa U5 small nuclear ribonucleoprotein component, NHP2-like protein 1, N-terminally processed, ... 著者 Zhang, Z, Kumar, V, Dybkov, O, Will, C.L, Zhong, J, Ludwig, S, Urlaub, H, Kastner, B, Stark, H, Luehrmann, R. 登録日 2023-10-24 公開日 2024-05-22 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (9.6 Å) 主引用文献 Structural insights into the cross-exon to cross-intron spliceosome switch. Nature, 630, 2024
8QYE	Catalytic core of endo-alpha-N-acetylgalactosaminidase from Bifidobacterium longum (EngBF) concieved by deep network hallucination: dEngBF4 分子名称: 1,2-ETHANEDIOL, ENDO-ALPHA-N-ACETYLGALACTOSAMINIDASE 著者 Aghajari, N. 登録日 2023-10-25 公開日 2024-03-06 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Carving out a Glycoside Hydrolase Active Site for Incorporation into a New Protein Scaffold Using Deep Network Hallucination. Acs Synth Biol, 13, 2024
8QZK	Catalytic core of endo-alpha-N-acetylgalactosaminidase from Bifidobacterium longum (EngBF) concieved by deep network hallucination: dEngBF4 Hexagonal form 分子名称: ENDO-ALPHA-N-ACETYLGALACTOSAMINIDASE 著者 Aghajari, N, Hansen, A.L, Thiesen, F.F, Crehuet, R, Marcos, E, Willemoes, M. 登録日 2023-10-27 公開日 2024-03-06 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (3.25 Å) 主引用文献 Carving out a Glycoside Hydrolase Active Site for Incorporation into a New Protein Scaffold Using Deep Network Hallucination. Acs Synth Biol, 13, 2024
8QZS	Cryo-EM structure of the cross-exon B-like complex 分子名称: 116 kDa U5 small nuclear ribonucleoprotein component, Microfibrillar-associated protein 1, NHP2-like protein 1, ... 著者 Zhang, Z, Kumar, V, Dybkov, O, Will, C.L, Zhong, J, Ludwig, S, Urlaub, H, Kastner, B, Stark, H, Luehrmann, R. 登録日 2023-10-29 公開日 2024-05-22 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (4.1 Å) 主引用文献 Structural insights into the cross-exon to cross-intron spliceosome switch. Nature, 630, 2024
8R08	Cryo-EM structure of the cross-exon pre-B+AMPPNP complex 分子名称: 116 kDa U5 small nuclear ribonucleoprotein component, NHP2-like protein 1, N-terminally processed, ... 著者 Zhang, Z, Kumar, V, Dybkov, O, Will, C.L, Zhong, J, Ludwig, S, Urlaub, H, Kastner, B, Stark, H, Luehrmann, R. 登録日 2023-10-31 公開日 2024-05-22 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (6.1 Å) 主引用文献 Structural insights into the cross-exon to cross-intron spliceosome switch. Nature, 630, 2024
8R09	Cryo-EM structure of the cross-exon pre-B+5'ss+ATPgammaS complex 分子名称: 116 kDa U5 small nuclear ribonucleoprotein component, 5'ss oligo, NHP2-like protein 1, ... 著者 Zhang, Z, Kumar, V, Dybkov, O, Will, C.L, Zhong, J, Ludwig, S, Urlaub, H, Kastner, B, Stark, H, Luehrmann, R. 登録日 2023-10-31 公開日 2024-05-22 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (4.3 Å) 主引用文献 Structural insights into the cross-exon to cross-intron spliceosome switch. Nature, 630, 2024
8R0A	Cryo-EM structure of the cross-exon pre-B+5'ss complex 分子名称: 116 kDa U5 small nuclear ribonucleoprotein component, 5'ss oligo, NHP2-like protein 1, ... 著者 Zhang, Z, Kumar, V, Dybkov, O, Will, C.L, Zhong, J, Ludwig, S, Urlaub, H, Kastner, B, Stark, H, Luehrmann, R. 登録日 2023-10-31 公開日 2024-05-22 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (5.8 Å) 主引用文献 Structural insights into the cross-exon to cross-intron spliceosome switch. Nature, 630, 2024
8R0B	Cryo-EM structure of the cross-exon pre-B+ATP complex 分子名称: 116 kDa U5 small nuclear ribonucleoprotein component, 5'ss oligo, NHP2-like protein 1, ... 著者 Zhang, Z, Kumar, V, Dybkov, O, Will, C.L, Zhong, J, Ludwig, S, Urlaub, H, Kastner, B, Stark, H, Luehrmann, R. 登録日 2023-10-31 公開日 2024-05-22 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (4.4 Å) 主引用文献 Structural insights into the cross-exon to cross-intron spliceosome switch. Nature, 630, 2024
8R3V	Escherichia coli paused disome complex (non-rotated disome interface) 分子名称: 1,4-DIAMINOBUTANE, 16S ribosomal RNA, 23S ribosomal RNA, ... 著者 Fluegel, T, Schacherl, M. 登録日 2023-11-10 公開日 2024-03-06 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (3.28 Å) 主引用文献 Transient disome complex formation in native polysomes during ongoing protein synthesis captured by cryo-EM. Nat Commun, 15, 2024
8R55	Bacillus subtilis MutS2-collided disome complex (collided 70S) 分子名称: 16S rRNA (1533-MER), 23S RNA (2887-MER), 30S ribosomal protein S10, ... 著者 Park, E, Mackens-Kiani, T, Berhane, R, Esser, H, Erdenebat, C, Burroughs, A.M, Berninghausen, O, Aravind, L, Beckmann, R, Green, R, Buskirk, A.R. 登録日 2023-11-16 公開日 2024-01-17 最終更新日 2024-02-28 実験手法 ELECTRON MICROSCOPY (3.57 Å) 主引用文献 B. subtilis MutS2 splits stalled ribosomes into subunits without mRNA cleavage. Embo J., 43, 2024
8R5O	Plastid-encoded RNA polymerase 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Webster, M.W, Pramanick, I, Vergara-Cruces, A. 登録日 2023-11-17 公開日 2024-03-13 実験手法 ELECTRON MICROSCOPY (2.49 Å) 主引用文献 Structure of the plant plastid-encoded RNA polymerase. Cell, 187, 2024
8R6C	70S Escherichia coli ribosome with Paenilamicin B2 bound with A- and P-site tRNA. 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S16, ... 著者 Koller, T.O, Wilson, D.N. 登録日 2023-11-22 公開日 2024-07-24 実験手法 ELECTRON MICROSCOPY (2.2 Å) 主引用文献 Paenilamicins from the honey bee pathogen Paenibacillus larvae are context-specific translocation inhibitors of protein synthesis. Biorxiv, 2024
8R6G	A quadruplex-duplex hybrid with a three-layered chair G-quadruplex topology 分子名称: DNA (33-MER) 著者 Vianney, Y.M, Weisz, K. 登録日 2023-11-22 公開日 2024-03-13 最終更新日 2024-07-10 実験手法 SOLUTION NMR 主引用文献 Structural Differences at Quadruplex-Duplex Interfaces Enable Ligand-Induced Topological Transitions. Adv Sci, 11, 2024
8R6S	Plastid-encoded RNA polymerase (Integrated model) 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Webster, M.W, Pramanick, I, Vergara-Cruces, A. 登録日 2023-11-22 公開日 2024-03-13 実験手法 ELECTRON MICROSCOPY (2.49 Å) 主引用文献 Structure of the plant plastid-encoded RNA polymerase. Cell, 187, 2024
8R7I	X-ray structure of blue laccase BP76 from the termite Neocapritermes taracua 分子名称: 1,4-benzoquinone, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-3-O-sulfo-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)][alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ... 著者 Skerlova, J, Brynda, J, Rezacova, P. 登録日 2023-11-24 公開日 2024-08-28 最終更新日 2024-09-04 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Crystal structure of blue laccase BP76, a unique termite suicidal defense weapon. Structure, 2024
8R8M	70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA. 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S16, ... 著者 Koller, T.O, Wilson, D.N. 登録日 2023-11-29 公開日 2024-07-24 実験手法 ELECTRON MICROSCOPY (2.4 Å) 主引用文献 Paenilamicins from the honey bee pathogen Paenibacillus larvae are context-specific translocation inhibitors of protein synthesis. Biorxiv, 2024
8RAS	Plastid-encoded RNA polymerase transcription elongation complex 分子名称: DNA (81-MER), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... 著者 Webster, M.W, Pramanick, I, Vergara-Cruces, A. 登録日 2023-12-01 公開日 2024-03-06 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (2.62 Å) 主引用文献 Structure of the plant plastid-encoded RNA polymerase. Cell, 187, 2024

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