PDB形式変換不可の PDB エントリー

7QC7	HisF-C9A-D11E-V33A_L50H_I52H mutant (apo) from T. maritima 分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Imidazole glycerol phosphate synthase subunit HisF 著者 Beaumet, M, Dose, A, Braeuer, A, Mahy, J, Ghattas, W, Groll, M, Hess, C. 登録日 2021-11-22 公開日 2022-08-10 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 An artificial metalloprotein with metal-adaptive coordination sites and Ni-dependent quercetinase activity. J.Inorg.Biochem., 235, 2022
7QC8	HisF-C9A-D11E-V33A_L50H_I52H mutant in complex with Zn(II) from T. maritima 分子名称: Imidazole glycerol phosphate synthase subunit HisF, SULFATE ION, ZINC ION 著者 Beaumet, M, Dose, A, Braeuer, A, Mahy, J, Ghattas, W, Groll, M, Hess, C. 登録日 2021-11-22 公開日 2022-08-10 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 An artificial metalloprotein with metal-adaptive coordination sites and Ni-dependent quercetinase activity. J.Inorg.Biochem., 235, 2022
7QCA	Spraguea lophii ribosome 分子名称: 40S Ribosomal protein S19, 40S ribosomal protein S0, 40S ribosomal protein S10, ... 著者 Gil Diez, P, McLaren, M, Isupov, M.N, Daum, B, Conners, R, Williams, B. 登録日 2021-11-22 公開日 2022-11-30 最終更新日 2023-12-20 実験手法 ELECTRON MICROSCOPY (2.79 Å) 主引用文献 CryoEM reveals that ribosomes in microsporidian spores are locked in a dimeric hibernating state Nat Microbiol, 2023
7QCQ	VHH Z70 in interaction with PHF6 Tau peptide 分子名称: GLYCEROL, Tau 301-312, VHH Z70 著者 Danis, C, Dupre, E, Zejneli, O, Caillierez, R, Arrial, A, Begard, S, Loyens, A, Mortelecque, J, Cantrelle, F.-X, Hanoulle, X, Rain, J.-C, Colin, M, Buee, L, Landrieu, I. 登録日 2021-11-25 公開日 2021-12-08 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Inhibition of Tau seeding by targeting Tau nucleation core within neurons with a single domain antibody fragment. Mol.Ther., 30, 2022
7QD7	TarM(Se)_G117R 分子名称: CHLORIDE ION, GLYCEROL, PENTAETHYLENE GLYCOL, ... 著者 Guo, Y, Stehle, T. 登録日 2021-11-26 公開日 2023-05-10 最終更新日 2023-12-06 実験手法 X-RAY DIFFRACTION (2.06 Å) 主引用文献 Invasive Staphylococcus epidermidis uses a unique processive wall teichoic acid glycosyltransferase to evade immune recognition. Sci Adv, 9, 2023
7QDF	Hexameric HIV-1 (M-group) CA R120 mutant 分子名称: BETA-MERCAPTOETHANOL, CHLORIDE ION, Gag polyprotein, ... 著者 Govasli, M.A.L, Pinotsis, N, McAlpine-Scott, S. 登録日 2021-11-26 公開日 2022-10-19 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.304 Å) 主引用文献 Evasion of cGAS and TRIM5 defines pandemic HIV. Nat Microbiol, 7, 2022
7QDL	N-TERMINAL BROMODOMAIN OF HUMAN BRD4 with I-BET567 分子名称: (2S,4R)-1-acetyl-4-((5-chloropyrimidin-2-yl)amino)-2-methyl-1,2,3,4-tetrahydroquinoline-6-carboxamide, 1,2-ETHANEDIOL, Bromodomain-containing protein 4 著者 Chung, C. 登録日 2021-11-27 公開日 2022-12-14 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (1.67 Å) 主引用文献 Design, Synthesis, and Characterization of I-BET567, a Pan-Bromodomain and Extra Terminal (BET) Bromodomain Oral Candidate. J.Med.Chem., 65, 2022
7QE3	Se-M variant of B-trefoil lectin from Salpingoeca rosetta in complex with GalNAc 分子名称: (2S)-hexane-1,2,6-triol, 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-galactopyranose, ... 著者 Notova, S, Varrot, A. 登録日 2021-12-01 公開日 2022-09-14 最終更新日 2022-09-28 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 The choanoflagellate pore-forming lectin SaroL-1 punches holes in cancer cells by targeting the tumor-related glycosphingolipid Gb3. Commun Biol, 5, 2022
7QE4	B-trefoil lectin from Salpingoeca rosetta in complex with GalNAc 分子名称: 2-acetamido-2-deoxy-alpha-D-galactopyranose, 2-acetamido-2-deoxy-beta-D-galactopyranose, CHLORIDE ION, ... 著者 Notova, S, Varrot, A. 登録日 2021-12-01 公開日 2022-09-14 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 The choanoflagellate pore-forming lectin SaroL-1 punches holes in cancer cells by targeting the tumor-related glycosphingolipid Gb3. Commun Biol, 5, 2022
7QEL	Structure of the mouse 8-oxoguanine DNA Glycosylase mOGG1 in complex with ligand TH011247 分子名称: (2~{R})-~{N}-(4,5,6,7-tetrahydro-1,2-benzoxazol-3-yl)spiro[2.3]hexane-2-carboxamide, N-glycosylase/DNA lyase, NICKEL (II) ION 著者 Davies, J.R, Scaletti, E.R, Stenmark, P. 登録日 2021-12-03 公開日 2022-12-14 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structure of the mouse 8-oxoguanine DNA Glycosylase mOGG1 in complex with ligand TH011247 To Be Published
7QEP	Cryo-EM structure of the ribosome from Encephalitozoon cuniculi 分子名称: 18S ribosomal RNA, 40S RIBOSOMAL PROTEIN S10, 40S RIBOSOMAL PROTEIN S11, ... 著者 Nicholson, D, Ranson, N.A, Melnikov, S.V. 登録日 2021-12-03 公開日 2022-02-09 実験手法 ELECTRON MICROSCOPY (2.7 Å) 主引用文献 Adaptation to genome decay in the structure of the smallest eukaryotic ribosome Nat Commun, 13, 2022
7QF2	Structure of miniSOG reconstituted with riboflavin as a cofactor 分子名称: CHLORIDE ION, COBALT (II) ION, GLYCEROL, ... 著者 Lafaye, C, Aumonier, S, von Stetten, D, Noirclerc-Savoye, N, Gotthard, G, Royant, A. 登録日 2021-12-03 公開日 2022-02-16 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.07 Å) 主引用文献 Riboflavin-binding proteins for singlet oxygen production. Photochem Photobiol Sci, 21, 2022
7QF3	Structure of the R57Q mutant of miniSOG expressed in E. coli in regular LB medium 分子名称: CHLORIDE ION, COBALT (II) ION, FLAVIN MONONUCLEOTIDE, ... 著者 Lafaye, C, Aumonier, S, von Stetten, D, Noirclerc-Savoye, N, Gotthard, G, Royant, A. 登録日 2021-12-03 公開日 2022-02-16 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.1 Å) 主引用文献 Riboflavin-binding proteins for singlet oxygen production. Photochem Photobiol Sci, 21, 2022
7QF4	Structure of the R57Q mutant of miniSOG expressed in E. coli in LB medium enriched with riboflavin 分子名称: CHLORIDE ION, COBALT (II) ION, RIBOFLAVIN, ... 著者 Lafaye, C, Aumonier, S, von Stetten, D, Noirclerc-Savoye, N, Gotthard, G, Royant, A. 登録日 2021-12-03 公開日 2022-02-16 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.17 Å) 主引用文献 Riboflavin-binding proteins for singlet oxygen production. Photochem Photobiol Sci, 21, 2022
7QF5	Structure of the Q103L mutant of miniSOG 分子名称: CHLORIDE ION, COBALT (II) ION, FLAVIN MONONUCLEOTIDE, ... 著者 Lafaye, C, Aumonier, S, von Stetten, D, Noirclerc-Savoye, N, Gotthard, G, Royant, A. 登録日 2021-12-03 公開日 2022-02-16 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.37 Å) 主引用文献 Riboflavin-binding proteins for singlet oxygen production. Photochem Photobiol Sci, 21, 2022
7QF9	Crystal structure of PDE6D bound to HRas peptide 分子名称: 1,2-ETHANEDIOL, FARNESYL, HRas peptide, ... 著者 Yelland, T, Ismail, I. 登録日 2021-12-05 公開日 2022-02-09 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Stabilization of the RAS:PDE6D Complex Is a Novel Strategy to Inhibit RAS Signaling. J.Med.Chem., 65, 2022
7QFC	Crystal structure of cytotoxin 13 from Naja naja, orthorhombic form 分子名称: Cytotoxin 13 著者 Samygina, V.R, Dubova, K.M, Bourenkov, G, Utkin, Y.N, Dubovskii, P.V. 登録日 2021-12-05 公開日 2022-04-27 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Variability in the Spatial Structure of the Central Loop in Cobra Cytotoxins Revealed by X-ray Analysis and Molecular Modeling. Toxins, 14, 2022
7QFF	Peptide VACKSSQP in complex with human cathepsin V C25A mutant 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, ACE-VAL-ALA-CYS-LYS, CHLORIDE ION, ... 著者 Loboda, J, Sosnowski, P, Tusar, L, Vidmar, R, Vizovisek, M, Horvat, J, Kosec, G, Impens, F, Demol, H, Turk, B, Gevaert, K, Turk, D. 登録日 2021-12-06 公開日 2022-12-21 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Proteomic data and structure analysis combined reveal interplay of structural rigidity and flexibility on selectivity of cysteine cathepsins. Commun Biol, 6, 2023
7QFH	Peptide AYFKKVL in complex with human cathepsin V C25A mutant 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, AMINO GROUP, CHLORIDE ION, ... 著者 Loboda, J, Sosnowski, P, Tusar, L, Vidmar, R, Vizovisek, M, Horvat, J, Kosec, G, Impens, F, Demol, H, Turk, B, Gevaert, K, Turk, D. 登録日 2021-12-06 公開日 2022-12-21 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.52 Å) 主引用文献 Proteomic data and structure analysis combined reveal interplay of structural rigidity and flexibility on selectivity of cysteine cathepsins. Commun Biol, 6, 2023
7QFT	Crystal structure of KLK6 in complex with compound 16a 分子名称: KLK6 Activity-Based Probe (Ahx-DPhe-Cha-Dht-Arg-DPP), Kallikrein-6 著者 Jagtap, P.K.A, Zhang, L, De Vita, E, Tate, E.W, Hennig, J. 登録日 2021-12-06 公開日 2022-11-09 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.47 Å) 主引用文献 A KLK6 Activity-Based Probe Reveals a Role for KLK6 Activity in Pancreatic Cancer Cell Invasion. J.Am.Chem.Soc., 144, 2022
7QFV	Crystal structure of KLK6 in complex with compound 17a 分子名称: KLK6 Activity-Based Probe (Ahx-DPhe-Ser(Z)-Dht-Arg-DPP), Kallikrein-6 著者 Jagtap, P.K.A, Zhang, L, De Vita, E, Tate, E.W, Hennig, J. 登録日 2021-12-06 公開日 2022-10-26 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.56 Å) 主引用文献 A KLK6 Activity-Based Probe Reveals a Role for KLK6 Activity in Pancreatic Cancer Cell Invasion. J.Am.Chem.Soc., 144, 2022
7QG8	Structure of the collided E. coli disome - VemP-stalled 70S ribosome 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Kratzat, H, Buschauer, R, Berninghausen, O, Beckmann, R. 登録日 2021-12-07 公開日 2022-03-16 最終更新日 2022-03-30 実験手法 ELECTRON MICROSCOPY (3.97 Å) 主引用文献 Ribosome collisions induce mRNA cleavage and ribosome rescue in bacteria. Nature, 603, 2022
7QG9	Tail tip of siphophage T5 : common core proteins 分子名称: Distal tail protein, L-shaped tail fiber protein p132, Minor tail protein, ... 著者 Linares, R, Arnaud, C.A, Effantin, G, Darnault, C, Epalle, N, Boeri Erba, E, Schoehn, G, Breyton, C. 登録日 2021-12-07 公開日 2022-12-21 最終更新日 2024-07-17 実験手法 ELECTRON MICROSCOPY (3.45 Å) 主引用文献 Structural basis of bacteriophage T5 infection trigger and E. coli cell wall perforation. Sci Adv, 9, 2023
7QGF	Cubic Insulin SAD phasing at 14.2 keV 分子名称: Insulin A chain, Insulin B chain 著者 Nanao, M.H, Basu, S. 登録日 2021-12-08 公開日 2022-06-01 実験手法 X-RAY DIFFRACTION (1.203 Å) 主引用文献 ID23-2: an automated and high-performance microfocus beamline for macromolecular crystallography at the ESRF. J.Synchrotron Radiat., 29, 2022
7QGG	Neuronal RNA granules are ribosome complexes stalled at the pre-translocation state 分子名称: 40S ribosomal protein S10, 40S ribosomal protein S11, 40S ribosomal protein S12, ... 著者 Pulk, A, Kipper, K, Mansour, A. 登録日 2021-12-08 公開日 2022-10-26 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.86 Å) 主引用文献 Neuronal RNA granules are ribosome complexes stalled at the pre-translocation state. J.Mol.Biol., 434, 2022

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