Legacy flatfile-incompatible PDB entries

8GLT	Backbone model of de novo-designed chlorophyll-binding nanocage O32-15 Descriptor: C2-chlorophyll-comp_O32-15_ctermHis, polyalanine model, C3-comp_O32-15 Authors: Redler, R.L, Ennist, N.M, Wang, S, Baker, D, Ekiert, D.C, Bhabha, G. Deposit date: 2023-03-23 Release date: 2024-03-27 Last modified: 2024-07-10 Method: ELECTRON MICROSCOPY (6.5 Å) Cite: De novo design of proteins housing excitonically coupled chlorophyll special pairs. Nat.Chem.Biol., 20, 2024
8GLV	96-nm repeat unit of doublet microtubules from Chlamydomonas reinhardtii flagella Descriptor: 28 kDa inner dynein arm light chain, axonemal, AAA+ ATPase domain-containing protein, ... Authors: Walton, T, Brown, A. Deposit date: 2023-03-23 Release date: 2023-05-31 Last modified: 2023-06-28 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Axonemal structures reveal mechanoregulatory and disease mechanisms. Nature, 618, 2023
8GMO	Bacteriophage T4 capsid shell containing 9DE insertions into the gp23* major capsid protein subunits Descriptor: Mature capsid vertex protein, Mature major capsid protein Authors: Fokine, A, Rao, V.B. Deposit date: 2023-03-26 Release date: 2023-05-10 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Design of bacteriophage T4-based artificial viral vectors for human genome remodeling. Nat Commun, 14, 2023
8GMS	Structure of LexA in complex with RecA filament Descriptor: DNA (5'-D(P*TP*TP*TP*TP*TP*T)-3'), LexA repressor, MAGNESIUM ION, ... Authors: Gao, B, Feng, Y. Deposit date: 2022-08-22 Release date: 2022-12-21 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (3.31 Å) Cite: Structural basis for regulation of SOS response in bacteria. Proc.Natl.Acad.Sci.USA, 120, 2023
8GPI	HIV-1 Env X18 UFO in complex with 8ANC195 Fab Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 8ANC195 Fab heavy chain, ... Authors: Niu, J, Xu, Y.W, Yang, B. Deposit date: 2022-08-26 Release date: 2023-08-09 Last modified: 2023-08-30 Method: ELECTRON MICROSCOPY (3 Å) Cite: Structures and immune recognition of Env trimers from two Asia prevalent HIV-1 CRFs. Nat Commun, 14, 2023
8GPK	Crystal structure of human anti-HIV-1 broadly neutralizing antibody F6 Fab Descriptor: F6 Fab heavy Chain, F6 Fab light chain Authors: Niu, J, Yang, B. Deposit date: 2022-08-26 Release date: 2023-08-09 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (3.34 Å) Cite: Structures and immune recognition of Env trimers from two Asia prevalent HIV-1 CRFs. Nat Commun, 14, 2023
8GPU	YFV_E_YD6Fab_prefusion Descriptor: Envelope protein, YD6Fab_H, YD6Fab_L Authors: Li, Y, Wu, L, Qi, J, Yan, J, Gao, G.F. Deposit date: 2022-08-27 Release date: 2022-11-02 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.79 Å) Cite: A neutralizing-protective supersite of human monoclonal antibodies for yellow fever virus. Innovation (N Y), 3, 2022
8GQJ	Structure of Thiolase from Pseudomonas aeruginosa PAO1 Descriptor: GLYCEROL, NONAETHYLENE GLYCOL, TRIETHYLENE GLYCOL, ... Authors: Hong, J, Son, H.F, Kim, K.J. Deposit date: 2022-08-30 Release date: 2024-03-13 Method: X-RAY DIFFRACTION (1.78 Å) Cite: Structure of thiolase from Pseudomonas aeruginosa PAO1 To Be Published
8GRA	Structure of Type VI secretion system cargo delivery vehicle Hcp-VgrG-PAAR Descriptor: Bacterodales T6SS protein TssD (Hcp), Type VI secretion system spike protein Paar, Type VI secretion system spike protein VgrG Authors: Wen, Y, He, W, Zhu, L. Deposit date: 2022-09-01 Release date: 2023-07-12 Last modified: 2023-08-30 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Structure and assembly of type VI secretion system cargo delivery vehicle. Cell Rep, 42, 2023
8GTB	Cryo-EM structure of the marine siphophage vB_DshS-R4C tail tube protein Descriptor: Major tail protein Authors: Huang, Y, Sun, H, Wei, S, Zheng, Q, Li, S, Zhang, R, Xia, N. Deposit date: 2022-09-08 Release date: 2023-07-12 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (3.43 Å) Cite: Structure and proposed DNA delivery mechanism of a marine roseophage. Nat Commun, 14, 2023
8GTC	Cryo-EM model of the marine siphophage vB_DshS-R4C baseplate-tail complex Descriptor: Distal tail protein, Hub protein, Major tail protein, ... Authors: Huang, Y, Sun, H, Wei, S, Zheng, Q, Li, S, Zhang, R, Xia, N. Deposit date: 2022-09-08 Release date: 2023-07-12 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (4.5 Å) Cite: Structure and proposed DNA delivery mechanism of a marine roseophage. Nat Commun, 14, 2023
8GTF	Cryo-EM model of the marine siphophage vB_DshS-R4C stopper-terminator complex Descriptor: Head-to-tail joining protein, Major tail protein, Terminator protein Authors: Huang, Y, Sun, H, Wei, S, Zheng, Q, Li, S, Zhang, R, Xia, N. Deposit date: 2022-09-08 Release date: 2023-07-12 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (6.6 Å) Cite: Structure and proposed DNA delivery mechanism of a marine roseophage. Nat Commun, 14, 2023
8GTN	Cryo-EM structure of the gasdermin B pore Descriptor: Isoform 4 of Gasdermin-B Authors: Hou, Y.J, Cheng, H, Ding, J. Deposit date: 2022-09-08 Release date: 2023-04-12 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (3.17 Å) Cite: Structural mechanisms for regulation of GSDMB pore-forming activity. Nature, 616, 2023
8GUF	Crystal structure of cyclic B subunit of type II heat labile enterotoxin Descriptor: Heat-labile enterotoxin IIB, B chain Authors: Peng, Y.J, Wu, C.Y, Sue, S.C. Deposit date: 2022-09-12 Release date: 2023-09-20 Method: X-RAY DIFFRACTION (1.99 Å) Cite: Crystal structure of cyclic B subunit of type II heat labile enterotoxin To Be Published
8GW2	Escherichia Coli Heat Labile Enterotoxin Type IIB B-Pentamer Circular Permutant CP13-14 Descriptor: Heat-labile enterotoxin IIB, B chain Authors: Hsu, S.H, Yuan, Y.T, Sue, S.C. Deposit date: 2022-09-16 Release date: 2023-09-20 Method: X-RAY DIFFRACTION (2.71 Å) Cite: Escherichia Coli Heat Labile Enterotoxin Type IIB B-Pentamer Circular Permutant (CP13-14) To Be Published
8GW5	Crystal structure of SaSsbA complexed with glycerol Descriptor: GLYCEROL, Single-stranded DNA-binding protein Authors: Yang, P.C, Huang, H.Y, Huang, C.Y. Deposit date: 2022-09-16 Release date: 2023-09-20 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Crystal Structure of DNA Replication Protein SsbA Complexed with the Anticancer Drug 5-Fluorouracil. Int J Mol Sci, 24, 2023
8GWA	Structure of the intact photosynthetic light-harvesting antenna-reaction center complex from a green sulfur bacterium Descriptor: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, 2-[(1E,3E,5E,7E,9E,11E,13E,15E,17E,19E)-3,7,12,16,20,24-hexamethylpentacosa-1,3,5,7,9,11,13,15,17,19,23-undecaenyl]-1,3,4-trimethyl-benzene, ... Authors: Chen, J.H, Zhang, X. Deposit date: 2022-09-16 Release date: 2022-11-23 Last modified: 2023-02-15 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Cryo-electron microscopy structure of the intact photosynthetic light-harvesting antenna-reaction center complex from a green sulfur bacterium. J Integr Plant Biol, 65, 2023
8GXQ	PIC-Mediator in complex with +1 nucleosome (T40N) in MH-binding state Descriptor: CDK-activating kinase assembly factor MAT1, Cyclin-H, Cyclin-dependent kinase 7, ... Authors: Chen, X, Wang, X, Liu, W, Ren, Y, Qu, X, Li, J, Yin, X, Xu, Y. Deposit date: 2022-09-21 Release date: 2022-11-02 Method: ELECTRON MICROSCOPY (5.04 Å) Cite: Structures of +1 nucleosome-bound PIC-Mediator complex. Science, 378, 2022
8GXS	PIC-Mediator in complex with +1 nucleosome (T40N) in H-binding state Descriptor: CDK-activating kinase assembly factor MAT1, Cyclin-H, Cyclin-dependent kinase 7, ... Authors: Chen, X, Wang, X, Liu, W, Ren, Y, Qu, X, Li, J, Yin, X. Deposit date: 2022-09-21 Release date: 2022-11-02 Method: ELECTRON MICROSCOPY (4.16 Å) Cite: Structures of +1 nucleosome-bound PIC-Mediator complex. Science, 378, 2022
8GXU	1 ATP-bound V1EG of V/A-ATPase from Thermus thermophilus Descriptor: ADENOSINE-5'-TRIPHOSPHATE, SULFATE ION, V-type ATP synthase alpha chain, ... Authors: Nakanishi, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K. Deposit date: 2022-09-21 Release date: 2023-01-25 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (2.5 Å) Cite: Cryo-EM analysis of V/A-ATPase intermediates reveals the transition of the ground-state structure to steady-state structures by sequential ATP binding. J.Biol.Chem., 299, 2023
8GXW	2 ATP-bound V1EG of V/A-ATPase from Thermus thermophilus Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, SULFATE ION, ... Authors: Nakanishi, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K. Deposit date: 2022-09-21 Release date: 2023-01-25 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (2.7 Å) Cite: Cryo-EM analysis of V/A-ATPase intermediates reveals the transition of the ground-state structure to steady-state structures by sequential ATP binding. J.Biol.Chem., 299, 2023
8GXX	3 nucleotide-bound V1EG of V/A-ATPase from Thermus thermophilus. Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... Authors: Nakanishi, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K. Deposit date: 2022-09-21 Release date: 2023-01-25 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (3 Å) Cite: Cryo-EM analysis of V/A-ATPase intermediates reveals the transition of the ground-state structure to steady-state structures by sequential ATP binding. J.Biol.Chem., 299, 2023
8GXY	2 sulfate-bound V1EG of V/A-ATPase from Thermus thermophilus. Descriptor: SULFATE ION, V-type ATP synthase alpha chain, V-type ATP synthase beta chain, ... Authors: Nakanishi, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K. Deposit date: 2022-09-21 Release date: 2023-01-25 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Cryo-EM analysis of V/A-ATPase intermediates reveals the transition of the ground-state structure to steady-state structures by sequential ATP binding. J.Biol.Chem., 299, 2023
8GXZ	1 sulfate and 1 ATP bound V1EG of V/A-ATPase from Thermus thermophilus. Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, SULFATE ION, ... Authors: Nakanishi, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K. Deposit date: 2022-09-21 Release date: 2023-01-25 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Cryo-EM analysis of V/A-ATPase intermediates reveals the transition of the ground-state structure to steady-state structures by sequential ATP binding. J.Biol.Chem., 299, 2023
8GYM	Cryo-EM structure of Tetrahymena thermophila respiratory mega-complex MC IV2+(I+III2+II)2 Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-DILAUROYL-SN-GLYCERO-3-PHOSPHATE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, ... Authors: Wu, M.C, Hu, Y.Q, Han, F.Z, Zhou, L. Deposit date: 2022-09-23 Release date: 2023-06-14 Method: ELECTRON MICROSCOPY (2.96 Å) Cite: Structures of Tetrahymena thermophila respiratory megacomplexes on the tubular mitochondrial cristae. Nat Commun, 14, 2023

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