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coronavirus
Coronavirus, 2020. Modified from the original illustration by David S. Goodsell@RCSB PDB

The recent outbreak of the Novel Coronavirus disease (COVID-19) is a serious threat to people all over the world. In order to understand and develop an effective drug against this virus (Severe Acute Respiratory Syndrome Coronavirus 2: SARS-CoV-2), structural work on the related proteins has already started and the resultant entries are accumulating in the PDB. PDBj provides a portal page for the COVID-19 related entries for our users. New entries will be added simultaneously with the public release from the wwPDB.

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Created: 2020-10-28 (last edited: more than 1 year ago)2022-09-02
9RHO
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BU of 9rho by Molmil
Structure of SARS-coV-2 NSP3 macrodomain in complex with ligand
Descriptor: Papain-like protease nsp3, [[(2~{R},3~{S},4~{R},5~{R})-5-(4-azanylpyrrolo[2,1-f][1,2,4]triazin-7-yl)-5-cyano-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] methyl hydrogen phosphate
Authors:Ruiz Carrillo, D, Sander, S, Tidow, H, Garcia-Alai, M.
Deposit date:2025-06-09
Release date:2026-06-24
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of SARS-coV-2 NSP3 macrodomain in complex with ligand
To Be Published
9VHT
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BU of 9vht by Molmil
The crystal structure of PLPro
Descriptor: CHLORIDE ION, MALONATE ION, Papain-like protease nsp3, ...
Authors:Xiao, Q.J.
Deposit date:2025-06-17
Release date:2026-06-24
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:The crystal structure of PLPro
To Be Published
29OK
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BU of 29ok by Molmil
PanDDA deposition -- Crystal Structure of SARS-CoV-2 main protease covalently bound to KL_C172
Descriptor: 3C-like proteinase nsp5, CHLORIDE ION, DIMETHYL SULFOXIDE, ...
Authors:Balcomb, B.H, Aschenbrenner, J.C, Kollar, L, Mihalovits, L.M, Tomlinson, C.W.E, Marples, P.G, Fairhead, M, Fearon, D, von delft, F, Bajusz, D, Keseru, G.M.
Deposit date:2026-03-26
Release date:2026-06-24
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Fragment-Based Design of Targeted Covalent Inhibitors: The Scope and Limitation of Linking Approaches.
Chemmedchem, 21, 2026
9RHN
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BU of 9rhn by Molmil
Structure of SARS-coV-2 NSP3 macrodomain in complex with ligand
Descriptor: Papain-like protease nsp3, [[(2~{R},3~{S},4~{R},5~{R})-5-(4-azanylpyrrolo[2,1-f][1,2,4]triazin-7-yl)-5-cyano-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-ethyl-phosphinic acid
Authors:Ruiz Carrillo, D, Sander, S, Tidow, H, Garcia-Alai, M, Fliegert, R, Sandmann, M.
Deposit date:2025-06-09
Release date:2026-06-24
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structure of SARS-coV-2 NSP3 macrodomain in complex with ligand
To Be Published
9OT4
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BU of 9ot4 by Molmil
SARS-CoV-2 Main Protease (Mpro) in Complex with Covalent Inhibitor E9
Descriptor: 1-(8-methyl-1,3,4,5-tetrahydro-2H-pyrido[4,3-b]indol-2-yl)ethan-1-one, 3C-like proteinase nsp5
Authors:Mazzorana, M, Oliveira Borges, P.H, Silva-Junior, F, Baptista Ferreira, S, Walsh, M.A.
Deposit date:2025-05-26
Release date:2026-06-24
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:SARS-CoV-2 Main Protease (Mpro) in Complex with Covalent Inhibitor E2
To Be Published
9OT5
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BU of 9ot5 by Molmil
SARS-CoV-2 Main Protease (Mpro) in Complex with Covalent Inhibitor E2
Descriptor: 1-[1-(4-chlorophenyl)-2,5-dimethyl-1H-pyrrol-3-yl]ethan-1-one, 3C-like proteinase nsp5, DI(HYDROXYETHYL)ETHER, ...
Authors:Mazzorana, M, Oliveira Borges, P.H, Silva-Junior, F, Baptista Ferreira, S, Walsh, M.A.
Deposit date:2025-05-26
Release date:2026-06-24
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:SARS-CoV-2 Main Protease (Mpro) in Complex with Covalent Inhibitor E2
To Be Published
12SN
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BU of 12sn by Molmil
SARS-CoV-2 RNA-dependent RNA polymerase in complex with 4'-FlA nucleotide analogue
Descriptor: MAGNESIUM ION, Non-structural protein 7, Non-structural protein 8, ...
Authors:Park, S, Gharpure, A, Ward, A.B.
Deposit date:2026-04-16
Release date:2026-06-24
Method:ELECTRON MICROSCOPY (3.38 Å)
Cite:Substrate and target selectivity of 4'-fluoroadenosine against viral and host polymerases.
Biorxiv, 2026

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PDB entries from 2026-06-24

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