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coronavirus
Coronavirus, 2020. Modified from the original illustration by David S. Goodsell@RCSB PDB

The recent outbreak of the Novel Coronavirus disease (COVID-19) is a serious threat to people all over the world. In order to understand and develop an effective drug against this virus (Severe Acute Respiratory Syndrome Coronavirus 2: SARS-CoV-2), structural work on the related proteins has already started and the resultant entries are accumulating in the PDB. PDBj provides a portal page for the COVID-19 related entries for our users. New entries will be added simultaneously with the public release from the wwPDB.

An explanation article covering one of the proteins of this virus is available on the "Molecules of the Month" page below:

The tab "All entries" contains all PDB IDs, in case you want to check all independent entries, including group depositions by the same authors. The "Repr. entries" tab contains only representative PDB entries with the highest resolution, excluding duplicate entries with 100% amino acid sequence identitiy, even if they contain a different ligand. Finally, the "New entries" tab contains the latest entries released this week.

Created: 2020-03-11 (last edited: 1 month ago)2020-09-03
All entries (502)Repr. entries (209)Latest entries (13)
7K8V
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STRUCTURE OF THE SARS-COV-2 S 2P TRIMER IN COMPLEX WITH THE HUMAN NEUTRALIZING ANTIBODY FAB FRAGMENT, C110
Descriptor:Spike glycoprotein, C110 Fab Heavy Chain, C110 Fab Light Chain, ...
Authors:Dam, K.A., Barnes, C.O., Bjorkman, P.J.
Deposit date:2020-09-27
Release date:2020-10-21
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:SARS-CoV-2 neutralizing antibody structures inform therapeutic strategies.
Nature, 2020
7K8T
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STRUCTURE OF THE SARS-COV-2 S 2P TRIMER IN COMPLEX WITH THE HUMAN NEUTRALIZING ANTIBODY FAB FRAGMENT, C002 (STATE 1)
Descriptor:Spike glycoprotein, C002 Fab Heavy Chain, C002 Fab Light Chain, ...
Authors:Malyutin, A.G., Barnes, C.O., Bjorkman, P.J.
Deposit date:2020-09-27
Release date:2020-10-21
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:SARS-CoV-2 neutralizing antibody structures inform therapeutic strategies.
Nature, 2020
7K8S
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STRUCTURE OF THE SARS-COV-2 S 2P TRIMER IN COMPLEX WITH THE HUMAN NEUTRALIZING ANTIBODY FAB FRAGMENT, C002 (STATE 1)
Descriptor:Spike glycoprotein, C002 Fab Heavy Chain, C002 Fab Light Chain, ...
Authors:Barnes, C.O., Malyutin, A.G., Bjorkman, P.J.
Deposit date:2020-09-27
Release date:2020-10-21
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:SARS-CoV-2 neutralizing antibody structures inform therapeutic strategies.
Nature, 2020
7K9P
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ROOM TEMPERATURE STRUCTURE OF NSP15 ENDORIBONUCLEASE FROM SARS COV-2 SOLVED USING SFX.
Descriptor:Uridylate-specific endoribonuclease, CITRIC ACID
Authors:Botha, S., Jernigan, R., Chen, J., Coleman, M.A., Frank, M., Grant, T.D., Hansen, D.T., Ketawala, G., Logeswaran, D., Martin-Garcia, J., Nagaratnam, N., Raj, A.L.L.X., Shelby, M., Yang, J.-H., Yung, M.C., Fromme, P.
Deposit date:2020-09-29
Release date:2020-10-21
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Room temperature structure of NendoU (Uridylate-specific endoribonuclease, Nsp15) solved using SFX.
To Be Published
7K8U
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STRUCTURE OF THE SARS-COV-2 S 2P TRIMER IN COMPLEX WITH THE HUMAN NEUTRALIZING ANTIBODY FAB FRAGMENT, C002 (STATE 1)
Descriptor:Spike glycoprotein, C104 Fab Heavy Chain, C104 Fab Light Chain, ...
Authors:Barnes, C.O., Malyutin, A.G., Bjorkman, P.J.
Deposit date:2020-09-27
Release date:2020-10-21
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:SARS-CoV-2 neutralizing antibody structures inform therapeutic strategies
Nature, 2020
7KDT
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HUMAN TOM70 IN COMPLEX WITH SARS COV2 ORF9B
Descriptor:Mitochondrial import receptor subunit TOM70, ORF9b protein
Authors:QCRG Structural Biology Consortium
Deposit date:2020-10-09
Release date:2020-10-21
Method:ELECTRON MICROSCOPY (3.05 Å)
Cite:Comparative Host-Coronavirus Protein Interaction Networks Reveal Pan-Viral Disease Mechanisms
Science, 2020
7K8W
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STRUCTURE OF THE SARS-COV-2 S 2P TRIMER IN COMPLEX WITH THE HUMAN NEUTRALIZING ANTIBODY FAB FRAGMENT, C119
Descriptor:Spike glycoprotein, C119 Fab Heavy Chain, C119 Fab Light Chain, ...
Authors:Sharaf, N.G., Barnes, C.O., Bjorkman, P.J.
Deposit date:2020-09-27
Release date:2020-10-21
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:SARS-CoV-2 neutralizing antibody structures inform therapeutic strategies.
Nature, 2020
7K8Z
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STRUCTURE OF THE SARS-COV-2 S 2P TRIMER IN COMPLEX WITH THE HUMAN NEUTRALIZING ANTIBODY FAB FRAGMENT, C135
Descriptor:Spike glycoprotein, C135 Fab Heavy Chain, C135 Fab Light Chain, ...
Authors:Barnes, C.O., Bjorkman, P.J.
Deposit date:2020-09-27
Release date:2020-10-21
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:SARS-CoV-2 neutralizing antibody structures inform therapeutic strategies
Nature, 2020
7K8Y
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STRUCTURE OF THE SARS-COV-2 S 2P TRIMER IN COMPLEX WITH THE HUMAN NEUTRALIZING ANTIBODY FAB FRAGMENT, C121 (STATE 2)
Descriptor:Spike glycoprotein, C121 Fab Heavy chain, C121 Fab Light chain, ...
Authors:Abernathy, M.E., Barnes, C.O., Bjorkman, P.J.
Deposit date:2020-09-27
Release date:2020-10-21
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:SARS-CoV-2 neutralizing antibody structures inform therapeutic strategies
Nature, 2020
7K8X
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STRUCTURE OF THE SARS-COV-2 S 2P TRIMER IN COMPLEX WITH THE HUMAN NEUTRALIZING ANTIBODY FAB FRAGMENT, C121 (STATE 1)
Descriptor:Spike glycoprotein, C121 Fab Heavy chain, C121 Fab Light chain, ...
Authors:Abernathy, M.E., Barnes, C.O., Bjorkman, P.J.
Deposit date:2020-09-27
Release date:2020-10-21
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:SARS-CoV-2 neutralizing antibody structures inform therapeutic strategies
Nature, 2020
7A29
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CRYO-EM STRUCTURE OF THE SARS-COV-2 SPIKE PROTEIN BOUND TO NEUTRALIZING SYBODIES (SB23) 2-UP CONFORMATION
Descriptor:Spike glycoprotein, Neutralising sybody (Sb23), 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Hallberg, B.M., Das, H.
Deposit date:2020-08-16
Release date:2020-10-21
Method:ELECTRON MICROSCOPY (2.94 Å)
Cite:Selection, biophysical and structural analysis of synthetic nanobodies that effectively neutralize SARS-CoV-2
BiorXiv, 2020
7K8M
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CRYSTAL STRUCTURE OF AN ANTI-SARS-COV-2 HUMAN NEUTRALIZING ANTIBODY FAB FRAGMENT, C110
Descriptor:C102 Fab Heavy Chain, C102 Fab Light Chain, Surface glycoprotein, ...
Authors:Jette, C.A., Barnes, C.O., Bjorkman, P.J.
Deposit date:2020-09-27
Release date:2020-10-21
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:SARS-CoV-2 neutralizing antibody structures inform therapeutic strategies.
Nature, 2020
7K90
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STRUCTURE OF THE SARS-COV-2 S 6P TRIMER IN COMPLEX WITH THE HUMAN NEUTRALIZING ANTIBODY FAB FRAGMENT, C144
Descriptor:Spike glycoprotein, C144 Fab Heavy Chain, C144 Fab Light Chain, ...
Authors:Barnes, C.O., Esswein, S.R., Bjorkman, P.J.
Deposit date:2020-09-27
Release date:2020-10-21
Method:ELECTRON MICROSCOPY (3.24 Å)
Cite:SARS-CoV-2 neutralizing antibody structures inform therapeutic strategies.
Nature, 2020
7JX3
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MAPPING NEUTRALIZING AND IMMUNODOMINANT SITES ON THE SARS-COV-2 SPIKE RECEPTOR-BINDING DOMAIN BY STRUCTURE-GUIDED HIGH-RESOLUTION SEROLOGY
Descriptor:Light chain of Fab domain of monoclonal antibody S309, Heavy chain of Fab domain of monoclonal antibody S309, Light chain of Fab domain of monoclonal antibody S2H14, ...
Authors:Snell, G., Czudnochowski, N., Rosen, L.E., Nix, J.C., Corti, D., Veesler, D., Park, Y.J., Walls, A.C., Tortorici, M.A., Cameroni, E., Pinto, D., Beltramello, M.
Deposit date:2020-08-26
Release date:2020-10-14
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Mapping Neutralizing and Immunodominant Sites on the SARS-CoV-2 Spike Receptor-Binding Domain by Structure-Guided High-Resolution Serology.
Cell(Cambridge,Mass.), 2020
7JV4
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SARS-COV-2 SPIKE IN COMPLEX WITH THE S2H13 NEUTRALIZING ANTIBODY (ONE RBD OPEN)
Descriptor:SARS-CoV-2 spike glycoprotein, S2H13 Fab heavy chain, S2H13 Fab light chain, ...
Authors:Park, Y.J., Tortorici, M.A., Walls, A.C., Czudnochowski, N., Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell, G., Veesler, D.
Deposit date:2020-08-20
Release date:2020-10-14
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Mapping Neutralizing and Immunodominant Sites on the SARS-CoV-2 Spike Receptor-Binding Domain by Structure-Guided High-Resolution Serology.
Cell(Cambridge,Mass.), 2020
7JVA
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SARS-COV-2 SPIKE IN COMPLEX WITH THE S2A4 NEUTRALIZING ANTIBODY FAB FRAGMENT (LOCAL REFINEMENT OF THE RECEPTOR-BINDING DOMAIN AND FAB VARIABLE DOMAINS)
Descriptor:S2A4 Fab heavy chain, S2A4 Fab light chain, SARS-CoV-2 spike glycoprotein, ...
Authors:Park, Y.J., Tortorici, M.A., Walls, A.C., Czudnochowski, N., Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell, G., Veesler, D.
Deposit date:2020-08-20
Release date:2020-10-14
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Mapping Neutralizing and Immunodominant Sites on the SARS-CoV-2 Spike Receptor-Binding Domain by Structure-Guided High-Resolution Serology.
Cell(Cambridge,Mass.), 2020
6XKQ
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CRYSTAL STRUCTURE OF SARS-COV-2 RECEPTOR BINDING DOMAIN IN COMPLEX WITH NEUTRALIZING ANTIBODY CV07-250
Descriptor:Spike protein S1, CV07-250 Heavy Chain, CV07-250 Light Chain, ...
Authors:Yuan, M., Liu, H., Zhu, X., Wu, N.C., Wilson, I.A.
Deposit date:2020-06-26
Release date:2020-10-14
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:A therapeutic non-self-reactive SARS-CoV-2 antibody protects from lung pathology in a COVID-19 hamster model
Cell(Cambridge,Mass.), 2020
6ZPE
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NONSTRUCTURAL PROTEIN 10 (NSP10) FROM SARS COV-2
Descriptor:Replicase polyprotein 1ab, ZINC ION, GLYCEROL, ...
Authors:Fisher, S.Z., Kozielski, F.
Deposit date:2020-07-08
Release date:2020-10-14
Last modified:2020-10-21
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Crystal Structure of Non-Structural Protein 10 from Severe Acute Respiratory Syndrome Coronavirus-2.
Int J Mol Sci, 21, 2020
7JV2
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SARS-COV-2 SPIKE IN COMPLEX WITH THE S2H13 NEUTRALIZING ANTIBODY FAB FRAGMENT (LOCAL REFINEMENT OF THE RECEPTOR-BINDING MOTIF AND FAB VARIABLE DOMAINS)
Descriptor:S2H13 Fab heavy chain, S2H13 Fab light chain, SARS-CoV-2 spike glycoprotein
Authors:Park, Y.J., Tortorici, M.A., Walls, A.C., Czudnochowski, N., Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell, G., Veesler, D.
Deposit date:2020-08-20
Release date:2020-10-14
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Mapping Neutralizing and Immunodominant Sites on the SARS-CoV-2 Spike Receptor-Binding Domain by Structure-Guided High-Resolution Serology.
Cell(Cambridge,Mass.), 2020
7JV6
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SARS-COV-2 SPIKE IN COMPLEX WITH THE S2H13 NEUTRALIZING ANTIBODY (CLOSED CONFORMATION)
Descriptor:SARS-CoV-2 spike glycoprotein, S2H13 Fab heavy chain, S2H13 Fab light chain, ...
Authors:Park, Y.J., Tortorici, M.A., Walls, A.C., Czudnochowski, N., Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell, G., Veesler, D.
Deposit date:2020-08-20
Release date:2020-10-14
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Mapping Neutralizing and Immunodominant Sites on the SARS-CoV-2 Spike Receptor-Binding Domain by Structure-Guided High-Resolution Serology.
Cell(Cambridge,Mass.), 2020
7JW0
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SARS-COV-2 SPIKE IN COMPLEX WITH THE S304 NEUTRALIZING ANTIBODY FAB FRAGMENT
Descriptor:SARS-CoV-2 spike glycoprotein, S304 Fab light chain, S304 Fab heavy chain, ...
Authors:Walls, A.C., Park, Y.J., Tortorici, M.A., Czudnochowski, N., Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell, G., Veesler, D.
Deposit date:2020-08-24
Release date:2020-10-14
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Mapping Neutralizing and Immunodominant Sites on the SARS-CoV-2 Spike Receptor-Binding Domain by Structure-Guided High-Resolution Serology.
Cell(Cambridge,Mass.), 2020
7K5I
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SARS-COV-2 NSP1 IN COMPLEX WITH HUMAN 40S RIBOSOME
Descriptor:40S ribosomal protein S17, 40S ribosomal rRNA18S, 40S ribosomal protein S29, ...
Authors:Wang, L., Shi, M., Wu, H.
Deposit date:2020-09-16
Release date:2020-10-14
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:SARS-CoV-2 Nsp1 suppresses host but not viral translation through a bipartite mechanism.
Biorxiv, 2020
7JVC
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SARS-COV-2 SPIKE IN COMPLEX WITH THE S2A4 NEUTRALIZING ANTIBODY FAB FRAGMENT
Descriptor:SARS-CoV-2 spike glycoprotein, S2A4 Fab heavy chain, S2A4 Fab light chain, ...
Authors:Park, Y.J., Tortorici, M.A., Walls, A.C., Czudnochowski, N., Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell, G., Veesler, D.
Deposit date:2020-08-20
Release date:2020-10-14
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Mapping Neutralizing and Immunodominant Sites on the SARS-CoV-2 Spike Receptor-Binding Domain by Structure-Guided High-Resolution Serology.
Cell(Cambridge,Mass.), 2020
6XKP
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CRYSTAL STRUCTURE OF SARS-COV-2 RECEPTOR BINDING DOMAIN IN COMPLEX WITH NEUTRALIZING ANTIBODY CV07-270
Descriptor:Spike protein S1, CV07-270 Heavy Chain, CV07-270 Light Chain, ...
Authors:Liu, H., Yuan, M., Zhu, X., Wu, N.C., Wilson, I.A.
Deposit date:2020-06-26
Release date:2020-10-14
Method:X-RAY DIFFRACTION (2.72 Å)
Cite:A therapeutic non-self-reactive SARS-CoV-2 antibody protects from lung pathology in a COVID-19 hamster model
Cell(Cambridge,Mass.), 2020
7JMW
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CRYSTAL STRUCTURE OF SARS-COV-2 SPIKE PROTEIN RECEPTOR-BINDING DOMAIN IN COMPLEX WITH CROSS-NEUTRALIZING ANTIBODY COVA1-16 FAB
Descriptor:Spike protein S1, COVA1-16 heavy chain, COVA1-16 light chain, ...
Authors:Liu, H., Yuan, M., Zhu, X., Wu, N.C., Wilson, I.A.
Deposit date:2020-08-03
Release date:2020-10-14
Method:X-RAY DIFFRACTION (2.89 Å)
Cite:cross-neutralizing antibody
To Be Published
170172
PDB entries from 2020-10-21