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Coronavirus, 2020. Modified from the original illustration by David S. Goodsell@RCSB PDB

The recent outbreak of the Novel Coronavirus disease (COVID-19) is a serious threat to people all over the world. In order to understand and develop an effective drug against this virus (Severe Acute Respiratory Syndrome Coronavirus 2: SARS-CoV-2), structural work on the related proteins has already started and the resultant entries are accumulating in the PDB. PDBj provides a portal page for the COVID-19 related entries for our users. New entries will be added simultaneously with the public release from the wwPDB.

An explanation article covering one of the proteins of this virus is available on the "Molecules of the Month" page below:

The tab "All entries" contains all PDB IDs, in case you want to check all independent entries, including group depositions by the same authors. The "Repr. entries" tab contains only representative PDB entries with the highest resolution, excluding duplicate entries with 100% amino acid sequence identitiy, even if they contain a different ligand. Finally, the "Latest entries" tab contains the latest entries released this week.

Created: 2020-10-28 (last edited: more than 1 year ago)

All entries (4406)Repr. entries (1944)Latest entries (19)

5SLY

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z1526504764
Descriptor:	1-(1-ethyl-1H-pyrazol-5-yl)-N-methylmethanamine, PHOSPHATE ION, Proofreading exoribonuclease nsp14, ...
Authors:	Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A.
Deposit date:	2022-03-03
Release date:	2022-03-16
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (2.018 Å)
Cite:	PanDDA analysis group deposition To Be Published

5SLZ

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z2072621991
Descriptor:	2-(difluoromethoxy)-1-[(3aR,6aS)-hexahydrocyclopenta[c]pyrrol-2(1H)-yl]ethan-1-one, PHOSPHATE ION, Proofreading exoribonuclease nsp14, ...
Authors:	Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A.
Deposit date:	2022-03-03
Release date:	2022-03-16
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (2.54 Å)
Cite:	PanDDA analysis group deposition To Be Published

5SM0

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z32665176
Descriptor:	(1-benzofuran-2-yl)(4-methylpiperidin-1-yl)methanone, PHOSPHATE ION, Proofreading exoribonuclease nsp14, ...
Authors:	Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A.
Deposit date:	2022-03-03
Release date:	2022-03-16
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (2.086 Å)
Cite:	PanDDA analysis group deposition To Be Published

5SM1

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z68277692
Descriptor:	N-methyl-N-[2-(pyridin-2-yl)ethyl]benzamide, PHOSPHATE ION, Proofreading exoribonuclease nsp14, ...
Authors:	Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A.
Deposit date:	2022-03-03
Release date:	2022-03-16
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (1.941 Å)
Cite:	PanDDA analysis group deposition To Be Published

5SM2

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z3006151474
Descriptor:	(5S)-5-(difluoromethoxy)pyridin-2(5H)-one, PHOSPHATE ION, Proofreading exoribonuclease nsp14, ...
Authors:	Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A.
Deposit date:	2022-03-03
Release date:	2022-03-16
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (1.781 Å)
Cite:	PanDDA analysis group deposition To Be Published

5SM3

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z943693514
Descriptor:	PHOSPHATE ION, Proofreading exoribonuclease nsp14, ZINC ION, ...
Authors:	Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A.
Deposit date:	2022-03-03
Release date:	2022-03-16
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (2.198 Å)
Cite:	PanDDA analysis group deposition To Be Published

5SM4

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z2856434944
Descriptor:	PHOSPHATE ION, Proofreading exoribonuclease nsp14, ZINC ION, ...
Authors:	Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A.
Deposit date:	2022-03-03
Release date:	2022-03-16
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (2.16 Å)
Cite:	PanDDA analysis group deposition To Be Published

5SM5

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z2856434807
Descriptor:	2-[4-(2-methoxyphenyl)piperazin-1-yl]ethanenitrile, PHOSPHATE ION, Proofreading exoribonuclease nsp14, ...
Authors:	Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A.
Deposit date:	2022-03-03
Release date:	2022-03-16
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (1.95 Å)
Cite:	PanDDA analysis group deposition To Be Published

5SM6

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z1899842917
Descriptor:	3-[(3,5-dimethyl-1,2-oxazol-4-yl)methyl]-5-methyl-1,3,4-thiadiazol-2(3H)-one, PHOSPHATE ION, Proofreading exoribonuclease nsp14, ...
Authors:	Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A.
Deposit date:	2022-03-03
Release date:	2022-03-16
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (2.29 Å)
Cite:	PanDDA analysis group deposition To Be Published

5SM7

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z1247413608
Descriptor:	1-(methanesulfonyl)piperidin-4-ol, PHOSPHATE ION, Proofreading exoribonuclease nsp14, ...
Authors:	Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A.
Deposit date:	2022-03-03
Release date:	2022-03-16
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (1.95 Å)
Cite:	PanDDA analysis group deposition To Be Published

5SM8

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z2027158783
Descriptor:	N-(2,1,3-benzoxadiazol-4-yl)acetamide, PHOSPHATE ION, Proofreading exoribonuclease nsp14, ...
Authors:	Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A.
Deposit date:	2022-03-03
Release date:	2022-03-16
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (1.95 Å)
Cite:	PanDDA analysis group deposition To Be Published

5SM9

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z2234920345
Descriptor:	N-(2-methoxy-5-methylphenyl)-N'-4H-1,2,4-triazol-4-ylurea, PHOSPHATE ION, Proofreading exoribonuclease nsp14, ...
Authors:	Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A.
Deposit date:	2022-03-03
Release date:	2022-03-16
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (2.01 Å)
Cite:	PanDDA analysis group deposition To Be Published

5SMA

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z2856434890
Descriptor:	4-methyl-N-phenylpiperazine-1-carboxamide, PHOSPHATE ION, Proofreading exoribonuclease nsp14, ...
Authors:	Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A.
Deposit date:	2022-03-03
Release date:	2022-03-16
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (2.011 Å)
Cite:	PanDDA analysis group deposition To Be Published

5SMB

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z419995480
Descriptor:	1-(morpholin-4-yl)-4-phenylbutan-1-one, PHOSPHATE ION, Proofreading exoribonuclease nsp14, ...
Authors:	Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A.
Deposit date:	2022-03-03
Release date:	2022-03-16
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (2.181 Å)
Cite:	PanDDA analysis group deposition To Be Published

5SMC

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z2033637875
Descriptor:	N~2~-(4-cyano-3-methyl-1,2-thiazol-5-yl)-N~2~-methylglycinamide, PHOSPHATE ION, Proofreading exoribonuclease nsp14, ...
Authors:	Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A.
Deposit date:	2022-03-03
Release date:	2022-03-16
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (2.19 Å)
Cite:	PanDDA analysis group deposition To Be Published

5SMD

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z274575916
Descriptor:	2,4-dimethyl-6-(piperazin-1-yl)pyrimidine, PHOSPHATE ION, Proofreading exoribonuclease nsp14, ...
Authors:	Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A.
Deposit date:	2022-03-03
Release date:	2022-03-16
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (1.826 Å)
Cite:	PanDDA analysis group deposition To Be Published

5SME

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z437584380
Descriptor:	(4-chlorophenyl)(thiomorpholin-4-yl)methanone, PHOSPHATE ION, Proofreading exoribonuclease nsp14, ...
Authors:	Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A.
Deposit date:	2022-03-03
Release date:	2022-03-16
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (1.91 Å)
Cite:	PanDDA analysis group deposition To Be Published

5SMF

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z56791867
Descriptor:	N,N-diethyl-5-methyl[1,2,4]triazolo[1,5-a]pyrimidin-7-amine, PHOSPHATE ION, Proofreading exoribonuclease nsp14, ...
Authors:	Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A.
Deposit date:	2022-03-03
Release date:	2022-03-16
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (2.011 Å)
Cite:	PanDDA analysis group deposition To Be Published

5SMG

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z2092370954
Descriptor:	3-amino-N-ethyl-N-methylbenzamide, PHOSPHATE ION, Proofreading exoribonuclease nsp14, ...
Authors:	Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A.
Deposit date:	2022-03-03
Release date:	2022-03-16
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (1.87 Å)
Cite:	PanDDA analysis group deposition To Be Published

5SMH

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z2856434938
Descriptor:	1-(5-methoxy-1H-indol-3-yl)-N,N-dimethyl-methanamine, PHOSPHATE ION, Proofreading exoribonuclease nsp14, ...
Authors:	Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A.
Deposit date:	2022-03-03
Release date:	2022-03-16
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (2.64 Å)
Cite:	PanDDA analysis group deposition To Be Published

5SMI

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z71580604
Descriptor:	(2S)-N-(5-methylpyridin-2-yl)oxolane-2-carboxamide, PHOSPHATE ION, Proofreading exoribonuclease nsp14, ...
Authors:	Imprachim, N, Yosaatmadja, Y, von-Delft, F, Bountra, C, Gileadi, O, Newman, J.A.
Deposit date:	2022-03-03
Release date:	2022-03-16
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (2.08 Å)
Cite:	PanDDA analysis group deposition To Be Published

7MW2

Structure of the SARS-CoV-2 Spike trimer with all RBDs down in complex with the Fab fragment of human neutralizing antibody clone 6
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fab of antibody clone 6, ...
Authors:	Hu, Y, Xiong, Y.
Deposit date:	2021-05-15
Release date:	2022-03-16
Last modified:	2023-11-01
Method:	ELECTRON MICROSCOPY (2.97 Å)
Cite:	Monospecific and bispecific monoclonal SARS-CoV-2 neutralizing antibodies that maintain potency against B.1.617. Nat Commun, 13, 2022

7MW3

Structure of the SARS-CoV-2 Spike trimer with two RBDs down in complex with the Fab fragment of human neutralizing antibody clone 6
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:	Hu, Y, Xiong, Y.
Deposit date:	2021-05-15
Release date:	2022-03-16
Last modified:	2023-11-01
Method:	ELECTRON MICROSCOPY (3.15 Å)
Cite:	Monospecific and bispecific monoclonal SARS-CoV-2 neutralizing antibodies that maintain potency against B.1.617. Nat Commun, 13, 2022

7MW4

Structure of the SARS-CoV-2 Spike trimer with one RBD down in complex with the Fab fragment of human neutralizing antibody clone 6
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:	Hu, Y, Xiong, Y.
Deposit date:	2021-05-15
Release date:	2022-03-16
Last modified:	2023-11-01
Method:	ELECTRON MICROSCOPY (3.42 Å)
Cite:	Monospecific and bispecific monoclonal SARS-CoV-2 neutralizing antibodies that maintain potency against B.1.617. Nat Commun, 13, 2022

7MW5

Structure of the SARS-CoV-2 Spike trimer with one RBD down in complex with the Fab fragment of human neutralizing antibody clone 2
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fab of antibody clone 2, ...
Authors:	Hu, Y, Xiong, Y.
Deposit date:	2021-05-15
Release date:	2022-03-16
Last modified:	2023-11-01
Method:	ELECTRON MICROSCOPY (3.42 Å)
Cite:	Monospecific and bispecific monoclonal SARS-CoV-2 neutralizing antibodies that maintain potency against B.1.617. Nat Commun, 13, 2022

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Total results:	4406
Displayed results:	25
Sorted by:	Release date (from oldest)