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신종 코로나바이러스 특집 콘텐츠

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코로나 바이러스
코로나 바이러스, 2020. David S. Goodsell @ RCSB PDB에 의한 오리지널 일러스트를 수정

신종 코로나바이러스 감염증 (Novel Coronavirus disease 2019:COVID-19)의 확산이 세계적으로 매우 큰 문제가 되고 있습니다. 시급히 새로운 바이러스(Severe Acute Respiratory Syndrome Coronavirus 2: SARS-CoV-2)를 이해하고 효과적인 약을 개발하기 위해, 신속하게 구조 생물학 연구가 시작되고 있습니다. PDBj는 사용자의 편의를 도모하기 위해 신종 코로나바이러스의 특집 페이지를 제공하고 있습니다. 매주 수요일에 최신 항목이 추가됩니다.

바이러스 단백질에 관한 해설기사는 아래의 「이달의 분자」 페이지를 참조하십시오.

「전체 엔트리」 탭에는, 모든 PDB ID가 포함되어 있습니다. 이용자가 전체의 독립된 엔트리를 검색하고 싶을 때 사용하실 수 있으며, 동일 저자에 의한 그룹등록의 엔트리도 전부 구별되어 있습니다. 「대표구조」 탭에는, 분해능이 가장 높은 대표구조만을 표지하고 있습니다. 아미노산 서열이 100 % 일치하는 PDB 엔트리의 경우, 다른 리간드를 포함하여도 대표구조에는 제외됩니다. 「최신 엔트리」 탭은, 이번주 공개된 가장 최근의 엔트리 입니다.


Created: 2020-09-03 (last edited: more than 1 year ago)2022-09-02
9J8T
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BU of 9j8t by Molmil
Crystal structure of SARS-CoV-2 main protease in complex with Mp-4L2
Descriptor: 3C-like proteinase nsp5, TYR-DSG-DLE-DPN-DGN-ARG-DTH-DAS-DTR-DTH-ALO-DGN-DTY-CCJ-GLY-NH2
Authors:Shi, Y.S, Yang, J.Y, Wang, M.W.
Deposit date:2024-08-21
Release date:2025-07-02
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:De novo discovery of a non-covalent cell-penetrating bicyclic peptide inhibitor targeting SARS-CoV-2 main protease
To Be Published
9J8U
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BU of 9j8u by Molmil
Crystal structure of SARS-CoV-2 main protease in complex with Mp-4D7
Descriptor: 3C-like proteinase nsp5, DTY-VAL-THR-PHE-HIS-ALO-2TL-2TL-PRO-PHE-LEU-DPR-PRO-CCJ-GLY-NH2
Authors:Shi, Y.S, Yang, J.Y, Wang, M.W.
Deposit date:2024-08-21
Release date:2025-07-02
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:De novo discovery of a non-covalent cell-penetrating bicyclic pep-tide inhibitor targeting SARS-CoV-2 main protease
To Be Published
9P6P
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BU of 9p6p by Molmil
Crystal Structure of the SARS-CoV-2 2'-O-Methyltransferase with (m7GpppA)pUpU (Cap-0) and S-Adenosyl-L-homocysteine (SAH).
Descriptor: 2'-O-methyltransferase, 7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE, CHLORIDE ION, ...
Authors:Minasov, G, Shuvalova, L, Maltseva, N, Kim, Y, Kiryukhina, O, Joachimiak, A, Satchell, K.J.F, Center for Structural Biology of Infectious Diseases (CSBID)
Deposit date:2025-06-19
Release date:2025-07-02
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal Structure of the SARS-CoV-2 2'-O-Methyltransferase with (m7GpppA)pUpU (Cap-0) and S-Adenosyl-L-homocysteine (SAH).
To Be Published
9CJO
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BU of 9cjo by Molmil
X-ray crystal structure of SARS-CoV-2 main protease quadruple mutants
Descriptor: 3C-like proteinase nsp5
Authors:Esler, M.A, Shi, K, Harris, R.S, Aihara, H.
Deposit date:2024-07-07
Release date:2025-07-09
Method:X-RAY DIFFRACTION (2.33 Å)
Cite:X-ray crystal structure of SARS-CoV-2 main protease quadruple mutants
To Be Published
9CJP
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BU of 9cjp by Molmil
X-ray crystal structure of SARS-CoV-2 main protease quadruple mutants in complex with Nirmatrelvir
Descriptor: (1R,2S,5S)-N-{(1E,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide, 1,2-ETHANEDIOL, 3C-like proteinase nsp5, ...
Authors:Esler, M.A, Shi, K, Harris, R.S, Aihara, H.
Deposit date:2024-07-07
Release date:2025-07-09
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:X-ray crystal structure of SARS-CoV-2 main protease quadruple mutants in complex with Nirmatrelvir
To Be Published
9CJQ
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BU of 9cjq by Molmil
X-ray crystal structure of SARS-CoV-2 main protease quadruple mutants in complex with Ensitrelvir
Descriptor: 1,2-ETHANEDIOL, 6-[(6-chloranyl-2-methyl-indazol-5-yl)amino]-3-[(1-methyl-1,2,4-triazol-3-yl)methyl]-1-[[2,4,5-tris(fluoranyl)phenyl]methyl]-1,3,5-triazine-2,4-dione, main protease
Authors:Esler, M.A, Shi, K, Harris, R.S, Aihara, H.
Deposit date:2024-07-07
Release date:2025-07-09
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:X-ray crystal structure of SARS-CoV-2 main protease quadruple mutants in complex with Ensitrelvir
To Be Published
9CJR
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BU of 9cjr by Molmil
X-ray crystal structure of SARS-CoV-2 main protease double mutants in complex with Ensitrelvir
Descriptor: 3C-like proteinase nsp5, 6-[(6-chloranyl-2-methyl-indazol-5-yl)amino]-3-[(1-methyl-1,2,4-triazol-3-yl)methyl]-1-[[2,4,5-tris(fluoranyl)phenyl]methyl]-1,3,5-triazine-2,4-dione, CHLORIDE ION, ...
Authors:Esler, M.A, Shi, K, Harris, R.S, Aihara, H.
Deposit date:2024-07-07
Release date:2025-07-09
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:X-ray crystal structure of SARS-CoV-2 main protease double mutants in complex with Ensitrelvir
To Be Published
9CJS
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BU of 9cjs by Molmil
X-ray crystal structure of SARS-CoV-2 main protease triple mutants in complex with Bofutrelvir
Descriptor: 3C-like proteinase nsp5, ~{N}-[(2~{S})-3-cyclohexyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanylidene-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]propan-2-yl]-1~{H}-indole-2-carboxamide
Authors:Esler, M.A, Shi, K, Harris, R.S, Aihara, H.
Deposit date:2024-07-07
Release date:2025-07-09
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:X-ray crystal structure of SARS-CoV-2 main protease triple mutants in complex with Bofutrelvir
To Be Published
9CJT
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BU of 9cjt by Molmil
X-ray crystal structure of SARS-CoV-2 main protease quadruple mutants in complex with Bofutrelvir
Descriptor: 3C-like proteinase nsp5, ~{N}-[(2~{S})-3-cyclohexyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanylidene-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]propan-2-yl]-1~{H}-indole-2-carboxamide
Authors:Esler, M.A, Shi, K, Harris, R.S, Aihara, H.
Deposit date:2024-07-07
Release date:2025-07-09
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:X-ray crystal structure of SARS-CoV-2 main protease quadruple mutants in complex with Bofutrelvir
To Be Published
9CJU
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BU of 9cju by Molmil
Structure of SARS-CoV-2 main protease in complex with Bofutrelvir in orthorhombic form
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Non-structural protein 7, ...
Authors:Esler, M.A, Shi, K, Harris, R.S, Aihara, H.
Deposit date:2024-07-07
Release date:2025-07-09
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:To be published
To Be Published
9CJV
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BU of 9cjv by Molmil
X-ray crystal structure of SARS-CoV-2 main protease complex with Bofutrelvir
Descriptor: 3C-like proteinase nsp5, DIMETHYL SULFOXIDE, ~{N}-[(2~{S})-3-cyclohexyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanylidene-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]propan-2-yl]-1~{H}-indole-2-carboxamide
Authors:Esler, M.A, Shi, K, Aihara, H.
Deposit date:2024-07-07
Release date:2025-07-09
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:X-ray crystal structure of SARS-CoV-2 main protease complex with Bofutrelvir
To Be Published
9E9Q
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BU of 9e9q by Molmil
SARS-CoV-2 SL5 crystal structure native
Descriptor: MAGNESIUM ION, RNA (101-MER)
Authors:Jones, C.P, Ferre-D'Amare, A.R.
Deposit date:2024-11-08
Release date:2025-07-09
Method:X-RAY DIFFRACTION (3.33 Å)
Cite:Crystallographic and cryoEM analyses reveal SARS-CoV-2 SL5 is a mobile T-shaped four-way junction with deep pockets.
Rna, 31, 2025
9FWH
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BU of 9fwh by Molmil
Crystal Structure of SARS-CoV-2 NSP10-ExoN in complex with VT00019
Descriptor: (4R)-4-phenyl-1,2-thiazolidine 1,1-dioxide, Guanine-N7 methyltransferase nsp14, Non-structural protein 10, ...
Authors:Krojer, T, Kozielski, F, Sele, C, Nyblom, M, Fisher, S.Z, Knecht, W.
Deposit date:2024-06-30
Release date:2025-07-09
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Crystal Structure of SARS-CoV-2 NSP10-ExoN in complex with VT00019
To Be Published
9FWI
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BU of 9fwi by Molmil
Ensemble model of ligand-free SARS-CoV-2 NSP10-NSP14 (ExoN) and in complex with partially bound VT00025
Descriptor: (3-oxidanylazetidin-1-yl)-phenyl-methanone, DIMETHYL SULFOXIDE, Guanine-N7 methyltransferase nsp14, ...
Authors:Krojer, T, Kozielski, F, Sele, C, Nyblom, M, Fisher, S.Z, Knecht, W.
Deposit date:2024-06-30
Release date:2025-07-09
Method:X-RAY DIFFRACTION (1.533 Å)
Cite:Ensemble model of ligand-free SARS-CoV-2 NSP10-NSP14 (ExoN) and in complex with partially bound VT00025
To Be Published
9FWJ
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BU of 9fwj by Molmil
Ensemble model of ligand-free SARS-CoV-2 NSP10-NSP14 (ExoN) and in complex with partially bound VT00079
Descriptor: 2-methoxybenzamide, Guanine-N7 methyltransferase nsp14, MAGNESIUM ION, ...
Authors:Krojer, T, Kozielski, F, Sele, C, Nyblom, M, Fisher, S.Z, Knecht, W.
Deposit date:2024-06-30
Release date:2025-07-09
Method:X-RAY DIFFRACTION (2.424 Å)
Cite:Ensemble model of ligand-free SARS-CoV-2 NSP10-NSP14 (ExoN) and in complex with partially bound VT00079
To Be Published
9FWL
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BU of 9fwl by Molmil
Ensemble model of ligand-free SARS-CoV-2 NSP10-NSP14 (ExoN) and in complex with partially bound VT00025
Descriptor: 3-phenylthiophene-2-carboxamide, DIMETHYL SULFOXIDE, Guanine-N7 methyltransferase nsp14, ...
Authors:Krojer, T, Kozielski, F, Sele, C, Nyblom, M, Fisher, S.Z, Knecht, W.
Deposit date:2024-06-30
Release date:2025-07-09
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Ensemble model of ligand-free SARS-CoV-2 NSP10-NSP14 (ExoN) and in complex with partially bound VT00025
To Be Published
9FWM
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BU of 9fwm by Molmil
Crystal Structure of SARS-CoV-2 NSP10-NSP14 (ExoN) in complex with VT00180
Descriptor: 1H-indole-3-carboxamide, DIMETHYL SULFOXIDE, Guanine-N7 methyltransferase nsp14, ...
Authors:Krojer, T, Kozielski, F, Sele, C, Nyblom, M, Fisher, S.Z, Knecht, W.
Deposit date:2024-06-30
Release date:2025-07-09
Method:X-RAY DIFFRACTION (1.574 Å)
Cite:Crystal Structure of SARS-CoV-2 NSP10-NSP14 (ExoN) in complex with VT00180
To Be Published
9FWN
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BU of 9fwn by Molmil
Crystal Structure of SARS-CoV-2 NSP10-NSP14 (ExoN) in complex with VT00219
Descriptor: 1-methyl-1-(phenylmethyl)urea, DIMETHYL SULFOXIDE, Guanine-N7 methyltransferase nsp14, ...
Authors:Krojer, T, Kozielski, F, Sele, C, Nyblom, M, Fisher, S.Z, Knecht, W.
Deposit date:2024-06-30
Release date:2025-07-09
Method:X-RAY DIFFRACTION (1.866 Å)
Cite:Crystal Structure of SARS-CoV-2 NSP10-NSP14 (ExoN) in complex with VT00219
To Be Published
9FWO
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BU of 9fwo by Molmil
Crystal Structure of SARS-CoV-2 NSP10-NSP14 (ExoN) in complex with VT00216
Descriptor: 1-methylpyrrole-2-carboxamide, Guanine-N7 methyltransferase nsp14, MAGNESIUM ION, ...
Authors:Krojer, T, Kozielski, F, Sele, C, Nyblom, M, Fisher, S.Z, Knecht, W.
Deposit date:2024-06-30
Release date:2025-07-09
Method:X-RAY DIFFRACTION (2.179 Å)
Cite:Crystal Structure of SARS-CoV-2 NSP10-NSP14 (ExoN) in complex with VT00216
To Be Published
9FWP
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BU of 9fwp by Molmil
Crystal Structure of SARS-CoV-2 NSP10-NSP14 (ExoN) in complex with VT00198
Descriptor: Guanine-N7 methyltransferase nsp14, MAGNESIUM ION, N-methylbenzamide, ...
Authors:Krojer, T, Kozielski, F, Sele, C, Nyblom, M, Fisher, S.Z, Knecht, W.
Deposit date:2024-06-30
Release date:2025-07-09
Method:X-RAY DIFFRACTION (2.381 Å)
Cite:Crystal Structure of SARS-CoV-2 NSP10-NSP14 (ExoN) in complex with VT00198
To Be Published
9FWQ
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BU of 9fwq by Molmil
Crystal Structure of SARS-CoV-2 NSP10-NSP14 (ExoN) in complex with VT00218
Descriptor: 5,6,7,8-tetrahydro-[1,2,4]triazolo[4,3-a]pyridine, Guanine-N7 methyltransferase nsp14, MAGNESIUM ION, ...
Authors:Krojer, T, Kozielski, F, Sele, C, Nyblom, M, Fisher, S.Z, Knecht, W.
Deposit date:2024-06-30
Release date:2025-07-09
Method:X-RAY DIFFRACTION (2.322 Å)
Cite:Crystal Structure of SARS-CoV-2 NSP10-NSP14 (ExoN) in complex with VT00218
To Be Published
9FWR
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BU of 9fwr by Molmil
Crystal Structure of SARS-CoV-2 NSP10-NSP14 (ExoN) in complex with VT00249
Descriptor: (4R)-4-phenyl-1,3-oxazolidin-2-one, Guanine-N7 methyltransferase nsp14, MAGNESIUM ION, ...
Authors:Krojer, T, Kozielski, F, Sele, C, Nyblom, M, Fisher, S.Z, Knecht, W.
Deposit date:2024-06-30
Release date:2025-07-09
Method:X-RAY DIFFRACTION (2.294 Å)
Cite:Crystal Structure of SARS-CoV-2 NSP10-NSP14 (ExoN) in complex with VT00249
To Be Published
9FWS
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BU of 9fws by Molmil
Crystal Structure of SARS-CoV-2 NSP10-NSP14 (ExoN) in complex with VT00258
Descriptor: 7-METHOXY-1H-INDAZOLE, DIMETHYL SULFOXIDE, Guanine-N7 methyltransferase nsp14, ...
Authors:Krojer, T, Kozielski, F, Sele, C, Nyblom, M, Fisher, S.Z, Knecht, W.
Deposit date:2024-06-30
Release date:2025-07-09
Method:X-RAY DIFFRACTION (1.433 Å)
Cite:Crystal Structure of SARS-CoV-2 NSP10-NSP14 (ExoN) in complex with VT00258
To Be Published
9FWT
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BU of 9fwt by Molmil
Ensemble model of ligand-free SARS-CoV-2 NSP10-NSP14 (ExoN) and in complex with partially bound VT00259
Descriptor: DIMETHYL SULFOXIDE, Guanine-N7 methyltransferase nsp14, Non-structural protein 10, ...
Authors:Krojer, T, Kozielski, F, Sele, C, Nyblom, M, Fisher, S.Z, Knecht, W.
Deposit date:2024-06-30
Release date:2025-07-09
Method:X-RAY DIFFRACTION (1.639 Å)
Cite:Ensemble model of ligand-free SARS-CoV-2 NSP10-NSP14 (ExoN) and in complex with partially bound VT00259
To Be Published
9FWU
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BU of 9fwu by Molmil
Crystal Structure of SARS-CoV-2 NSP10-NSP14 (ExoN) in complex with VT00421
Descriptor: DIMETHYL SULFOXIDE, Guanine-N7 methyltransferase nsp14, N,N-dimethyl-3-oxidanyl-benzamide, ...
Authors:Krojer, T, Kozielski, F, Sele, C, Nyblom, M, Fisher, S.Z, Knecht, W.
Deposit date:2024-06-30
Release date:2025-07-09
Method:X-RAY DIFFRACTION (1.425 Å)
Cite:Crystal Structure of SARS-CoV-2 NSP10-NSP14 (ExoN) in complex with VT00421
To Be Published

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