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신종 코로나바이러스 특집 콘텐츠

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코로나 바이러스
코로나 바이러스, 2020. David S. Goodsell @ RCSB PDB에 의한 오리지널 일러스트를 수정

신종 코로나바이러스 감염증 (Novel Coronavirus disease 2019:COVID-19)의 확산이 세계적으로 매우 큰 문제가 되고 있습니다. 시급히 새로운 바이러스(Severe Acute Respiratory Syndrome Coronavirus 2: SARS-CoV-2)를 이해하고 효과적인 약을 개발하기 위해, 신속하게 구조 생물학 연구가 시작되고 있습니다. PDBj는 사용자의 편의를 도모하기 위해 신종 코로나바이러스의 특집 페이지를 제공하고 있습니다. 매주 수요일에 최신 항목이 추가됩니다.

바이러스 단백질에 관한 해설기사는 아래의 「이달의 분자」 페이지를 참조하십시오.

「전체 엔트리」 탭에는, 모든 PDB ID가 포함되어 있습니다. 이용자가 전체의 독립된 엔트리를 검색하고 싶을 때 사용하실 수 있으며, 동일 저자에 의한 그룹등록의 엔트리도 전부 구별되어 있습니다. 「대표구조」 탭에는, 분해능이 가장 높은 대표구조만을 표지하고 있습니다. 아미노산 서열이 100 % 일치하는 PDB 엔트리의 경우, 다른 리간드를 포함하여도 대표구조에는 제외됩니다. 「최신 엔트리」 탭은, 이번주 공개된 가장 최근의 엔트리 입니다.


Created: 2020-09-03 (last edited: more than 1 year ago)2022-09-02
9UHT
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BU of 9uht by Molmil
SARS-CoV-2 E-RTC in complex with RNA-nsp9 and GMPPNP
Descriptor: Helicase nsp13, Non-structural protein 7, Non-structural protein 8, ...
Authors:Huang, Y.C, Liu, Y.X, Lou, Z.Y, Rao, Z.H, Yan, L.M.
Deposit date:2025-04-14
Release date:2025-06-11
Method:ELECTRON MICROSCOPY (2.89 Å)
Cite:Response to Matter Arising: Substrate selection and transition state support the mechanism for GTP-mediate RNA capping catalyzed by SARS-CoV-2 NiRAN
To Be Published
9C7X
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BU of 9c7x by Molmil
Crystal structure of SARS-CoV-2 antibody 1H06 in complex with a HR2 peptide
Descriptor: Heavy Chain of SARS-CoV-2 antibody 1H06, Light Chain of SARS-CoV-2 antibody 1H06, Spike protein S2'
Authors:Van Wazer, D.J, Zhou, T, Kwong, P.D.
Deposit date:2024-06-11
Release date:2025-06-18
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:SARS-CoV-2 Peptide Immunization in Mice Elicits Broadly Neutralizing Antibodies Targeting Cryptic S2 Helical-Stem Epitope
To Be Published
9EEI
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BU of 9eei by Molmil
Crystal structure of the SARS-CoV-2 Omicron nsp5 main protease (Mpro) E166V mutant in complex with inhibitor GC376
Descriptor: 3C-like proteinase nsp5, N~2~-[(benzyloxy)carbonyl]-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide
Authors:Neilsen, G, Kirby, K.A, Sarafianos, S.G.
Deposit date:2024-11-19
Release date:2025-06-18
Method:X-RAY DIFFRACTION (2.76 Å)
Cite:Strategy to overcome a nirmatrelvir resistance mechanism in the SARS-CoV-2 nsp5 protease.
Sci Adv, 11, 2025
9EET
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BU of 9eet by Molmil
Crystal structure of the SARS-CoV-2 nsp5 main protease (Mpro) E166V mutant in complex with inhibitor GC376
Descriptor: 3C-like proteinase nsp5, N~2~-[(benzyloxy)carbonyl]-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide
Authors:Neilsen, G, Kirby, K.A, Sarafianos, S.G.
Deposit date:2024-11-19
Release date:2025-06-18
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Strategy to overcome a nirmatrelvir resistance mechanism in the SARS-CoV-2 nsp5 protease.
Sci Adv, 11, 2025
9EEV
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BU of 9eev by Molmil
Crystal structure of the SARS-CoV-2 Omicron nsp5 main protease (Mpro) E166V mutant in complex with inhibitor Nirmatrelvir (PF-07321332)
Descriptor: (1R,2S,5S)-N-{(1E,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide, 3C-like proteinase nsp5
Authors:Neilsen, G, Kirby, K.A, Sarafianos, S.G.
Deposit date:2024-11-19
Release date:2025-06-18
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Strategy to overcome a nirmatrelvir resistance mechanism in the SARS-CoV-2 nsp5 protease.
Sci Adv, 11, 2025
9FMW
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BU of 9fmw by Molmil
Omicron BA.1 Spike protein with neutralizing NTD specific mAb K501SP6
Descriptor: Fab of neutralizing mAb K501SP6 heavy chain, Fab of neutralizing mAb K501SP6 light chain, Spike glycoprotein,Fibritin
Authors:Bjoernsson, K.H, Walker, M.R, Raghavan, S.S.R, Ward, A.B, Barfod, L.K.
Deposit date:2024-06-07
Release date:2025-06-18
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Omicron BA.1 Spike protein with neutralizing NTD specific mAb K501SP6
To Be Published
9IKZ
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BU of 9ikz by Molmil
SARS-CoV-2 E-RTC bound to pRNA-nsp9 and GDP-BeF3-
Descriptor: BERYLLIUM TRIFLUORIDE ION, GUANOSINE-5'-DIPHOSPHATE, Helicase nsp13, ...
Authors:Yan, L.M, Huang, Y.C, Liu, Y.X, Rao, Z.H, Lou, Z.Y.
Deposit date:2024-06-29
Release date:2025-06-18
Method:ELECTRON MICROSCOPY (3.14 Å)
Cite:Substrate selection and transition reveal the mechanism for RNA capping catalyzed by SARS-CoV-2 NiRAN
To Be Published
9VAO
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BU of 9vao by Molmil
Crystal structure of Papain-like protease (PLpro) from SARS-CoV-2
Descriptor: GLYCEROL, PHOSPHATE ION, Papain-like protease nsp3, ...
Authors:Arya, R, Ganesh, J, Prashar, V, Kumar, M.
Deposit date:2025-06-03
Release date:2025-06-18
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Crystal structure of Papain-like protease (PLpro) from SARS-CoV-2
To Be Published
9CPP
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BU of 9cpp by Molmil
Crystal structure of SARS-CoV-2 receptor binding domain in complex with antibodies M22-17 and CC12.3
Descriptor: CC12.3 Fab heavy chain, CC12.3 Fab light chain, CITRIC ACID, ...
Authors:Feng, Z, Wilson, I.A.
Deposit date:2024-07-18
Release date:2025-06-25
Method:X-RAY DIFFRACTION (3.19 Å)
Cite:Structures of CR3022-like antibodies
To Be Published
9CPQ
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BU of 9cpq by Molmil
Crystal structure of SARS-CoV-2 receptor binding domain in complex with antibodies M22-44 and CC12.3
Descriptor: CC12.3 Fab heavy chain, CC12.3 Fab light chain, CITRIC ACID, ...
Authors:Feng, Z, Wilson, I.A.
Deposit date:2024-07-18
Release date:2025-06-25
Method:X-RAY DIFFRACTION (2.88 Å)
Cite:Structures of CR3022-like antibodies
To Be Published
9CPR
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BU of 9cpr by Molmil
Crystal structure of SARS-CoV-2 receptor binding domain in complex with antibodies M22-90 and CC12.3
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose, CC12.3 Fab heavy chain, CC12.3 Fab light chain, ...
Authors:Feng, Z, Wilson, I.A.
Deposit date:2024-07-18
Release date:2025-06-25
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structures of CR3022-like antibodies
To Be Published
9CPS
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BU of 9cps by Molmil
Crystal structure of SARS-CoV-2 receptor binding domain in complex with antibodies M22-91 and CC12.3
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CC12.3 Fab heavy chain, CC12.3 Fab light chain, ...
Authors:Feng, Z, Wilson, I.A.
Deposit date:2024-07-18
Release date:2025-06-25
Method:X-RAY DIFFRACTION (3.03 Å)
Cite:Structures of CR3022-like antibodies
To Be Published
9CPT
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BU of 9cpt by Molmil
Crystal structure of SARS-CoV-2 receptor binding domain in complex with antibodies M22-92 and CC12.3
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CC12.3 Fab heavy chain, CC12.3 Fab light chain, ...
Authors:Feng, Z, Wilson, I.A.
Deposit date:2024-07-18
Release date:2025-06-25
Method:X-RAY DIFFRACTION (3.51 Å)
Cite:Structures of CR3022-like antibodies
To Be Published
9CPU
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BU of 9cpu by Molmil
Crystal structure of SARS-CoV-2 receptor binding domain in complex with antibodies C03-0304 and CC12.3
Descriptor: C03-0304 Fab heavy chain, C03-0304 Fab light chain, CC12.3 Fab heavy chain, ...
Authors:Feng, Z, Wilson, I.A.
Deposit date:2024-07-18
Release date:2025-06-25
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structures of CR3022-like antibodies
To Be Published
9CPV
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BU of 9cpv by Molmil
Crystal structure of SARS-CoV-2 receptor binding domain in complex with antibodies C03-0614 and CC12.3
Descriptor: C03-0614 Fab heavy chain, C03-0614 Fab light chain, CC12.3 Fab heavy chain, ...
Authors:Feng, Z, Wilson, I.A.
Deposit date:2024-07-18
Release date:2025-06-25
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structures of CR3022-like antibodies
To Be Published
9CPW
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BU of 9cpw by Molmil
Crystal structure of SARS-CoV-2 receptor binding domain in complex with antibodies C11-1036 and CC12.3
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, C11-1036 Fab heavy chain, C11-1036 Fab light chain, ...
Authors:Feng, Z, Wilson, I.A.
Deposit date:2024-07-18
Release date:2025-06-25
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structures of CR3022-like antibodies
To Be Published
9CPX
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BU of 9cpx by Molmil
Crystal structure of SARS-CoV-2 receptor binding domain in complex with antibodies C03-0138 and CC12.3
Descriptor: C03-0138 Fab heavy chain, C03-0138 Fab light chain, CC12.3 Fab heavy chain, ...
Authors:Feng, Z, Wilson, I.A.
Deposit date:2024-07-18
Release date:2025-06-25
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structures of CR3022-like antibodies
To Be Published
9CPY
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BU of 9cpy by Molmil
Crystal structure of SARS-CoV-2 receptor binding domain in complex with antibodies C11-0860 and CC12.3
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, C11-0860 Fab heavy chain, C11-0860 Fab light chain, ...
Authors:Feng, Z, Wilson, I.A.
Deposit date:2024-07-18
Release date:2025-06-25
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structures of CR3022-like antibodies
To Be Published
9P0F
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BU of 9p0f by Molmil
Crystal Structure of the C-terminal Cytoplasmic Domain of nsp4 from SARS-CoV-2
Descriptor: Non-structural protein 4, SODIUM ION
Authors:Minasov, G, Shuvalova, L, Brunzelle, J.S, Satchell, K.J.F, Center for Structural Biology of Infectious Diseases (CSBID)
Deposit date:2025-06-06
Release date:2025-06-25
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Crystal Structure of the C-terminal Cytoplasmic Domain of nsp4 from SARS-CoV-2
To Be Published
9CFE
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BU of 9cfe by Molmil
Cryo-EM Local Refinement of Antibody 19-77 in complex with prefusion SARS-CoV-2 Spike glycoprotein RBD
Descriptor: Spike protein S1, heavy chain, light chain
Authors:Casner, R.G, Shapiro, L.
Deposit date:2024-06-27
Release date:2025-07-02
Method:ELECTRON MICROSCOPY (3.03 Å)
Cite:More SARS-CoV-2 antibodies
To Be Published
9CFF
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BU of 9cff by Molmil
Cryo-EM Refinement of Antibody 19-77 in complex with SARS-CoV-2 HK.3 RBD
Descriptor: Spike protein S1, heavy chain, light chain
Authors:Casner, R.G, Shapiro, L.
Deposit date:2024-06-27
Release date:2025-07-02
Method:ELECTRON MICROSCOPY (3 Å)
Cite:More SARS-CoV-2 antibodies
To Be Published
9CFG
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BU of 9cfg by Molmil
Cryo-EM Refinement of Antibody 19-77 R71V in complex with SARS-CoV-2 HK.3 RBD
Descriptor: Spike protein S1, heavy chain, light chain
Authors:Casner, R.G, Shapiro, L.
Deposit date:2024-06-27
Release date:2025-07-02
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:More SARS-CoV-2 antibodies
To Be Published
9CFH
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BU of 9cfh by Molmil
Cryo-EM Refinement of Antibody 19-77 R71V in complex with SARS-CoV-2 JD.1.1 RBD
Descriptor: Spike protein S1, heavy chain, light chain
Authors:Casner, R.G, Shapiro, L.
Deposit date:2024-06-27
Release date:2025-07-02
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:More SARS-CoV-2 antibodies
To Be Published
9G0H
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BU of 9g0h by Molmil
Crystal structure of SARS-CoV-2 main protease (MPro) in complex with the noncovalently bound inhibitor C5N17A
Descriptor: 3C-like proteinase nsp5, CHLORIDE ION, DIMETHYL SULFOXIDE, ...
Authors:Yang, C.-C, Strater, N, Sylvester, K, Muller, C.E, Yang, M, Lee, M.K, Gao, S, Song, L, Liu, X, Kim, M, Zhan, P.
Deposit date:2024-07-08
Release date:2025-07-02
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Miniaturized Modular Click Chemistry-enabled Rapid Discovery of Unique SARS-CoV-2 M pro Inhibitors With Robust Potency and Drug-like Profile.
Adv Sci, 11, 2024
9G0I
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BU of 9g0i by Molmil
Crystal structure of SARS-CoV-2 main protease (MPro) in complex with the noncovalently bound inhibitor C5N17B
Descriptor: 3C-like proteinase nsp5, DIMETHYL SULFOXIDE, IMIDAZOLE, ...
Authors:Yang, C.-C, Strater, N, Sylvester, K, Muller, C.E, Yang, M, Lee, M.K, Gao, S, Song, L, Liu, X, Kim, M, Zhan, P.
Deposit date:2024-07-08
Release date:2025-07-02
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Miniaturized Modular Click Chemistry-enabled Rapid Discovery of Unique SARS-CoV-2 M pro Inhibitors With Robust Potency and Drug-like Profile.
Adv Sci, 11, 2024

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건을2025-07-09부터공개중

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