Loading
PDBj
メニューPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

新型コロナウイルスの構造情報

このページの他言語版もあります: English简体中文繁體中文한국어
コロナウイルス
コロナウイルス, 2020. David S. Goodsell@RCSB PDB による原画を修正

最近、新型コロナウイルス感染症(Novel Coronavirus disease 2019: COVID-19)の拡大が世界中で深刻な問題となっています。早急にこの新型ウイルス(Severe Acute Respiratory Syndrome Coronavirus 2: SARS-CoV-2)を理解し有効な薬を開発するため,関連するタンパク質の構造研究は既に始まっています。そして,解明された構造はPDBに登録されていっています。PDBjでは利用者の利便を図るため,新型コロナウイルス特集ページを作成しました。新たなエントリーが毎週水曜日の週次更新で公開されると、同時にこのページにも追加されます。

またこのウイルスのタンパク質に関する解説記事を以下の「今月の分子」ページに掲載しています。

「全エントリー」のタブでは,同じ著者によるグループ登録のエントリーも全て区別し,すべてのPDB IDを省略せず表示しています。 「代表構造」タブには最も分解能の高い代表構造のみを表示しており,アミノ酸配列が100%同じPDBエントリーはリガンドが異なるものも含め除外してあります。 「最新のエントリー」のタブは,今週公開された最も新しいエントリーです。


作成日: 2020-09-03 (最終更新日: more than 1 year ago)2022-09-02
8VEC
DownloadVisualize
BU of 8vec by Molmil
Deep Mutational Scanning of SARS-CoV-2 PLpro
分子名称: Papain-like protease nsp3, ZINC ION
著者Wu, X, Nguyen, J.V, Call, M.E, Call, M.J.
登録日2023-12-18
公開日2024-03-20
最終更新日2024-08-07
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Mutational profiling of SARS-CoV-2 papain-like protease reveals requirements for function, structure, and drug escape.
Nat Commun, 15, 2024
9EMJ
DownloadVisualize
BU of 9emj by Molmil
SARS-CoV-2 methyltransferase nsp10-16 in complex with Toyocamycin and m7GpppA (Cap0-analog)
分子名称: 1,2-ETHANEDIOL, 2'-O-methyltransferase nsp16, 4-amino-7-(beta-D-ribofuranosyl)-7H-pyrrolo[2,3-d]pyrimidine-5-carbonitrile, ...
著者Kremling, V, Sprenger, J, Oberthuer, D, Kiene, A.
登録日2024-03-08
公開日2024-03-20
実験手法X-RAY DIFFRACTION (1.79 Å)
主引用文献SARS-CoV-2 methyltransferase nsp10-16 in complex with natural and drug-like purine analogs for guiding structure-based drug development
To Be Published
8VYE
DownloadVisualize
BU of 8vye by Molmil
SARS-CoV-2 S (C.37 Lambda variant) plus S309, S2L20, and S2X303 Fabs
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, S2L20 Heavy Chain, S2L20 Light Chain, ...
著者McCallum, M, Veesler, D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
登録日2024-02-08
公開日2024-03-27
最終更新日2024-11-13
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献Quantifying how single dose Ad26.COV2.S vaccine efficacy depends on Spike sequence features.
Nat Commun, 15, 2024
8VYF
DownloadVisualize
BU of 8vyf by Molmil
SARS-CoV-2 S NTD (C.37 Lambda variant) plus S2L20 and S2X303 Fabs, local refinement
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, S2L20 Heavy Chain, ...
著者McCallum, M, Veesler, D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
登録日2024-02-08
公開日2024-03-27
最終更新日2024-11-06
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Quantifying how single dose Ad26.COV2.S vaccine efficacy depends on Spike sequence features.
Nat Commun, 15, 2024
8VYG
DownloadVisualize
BU of 8vyg by Molmil
SARS-CoV-2 S RBD (C.37 Lambda variant) plus S309 Fab, local refinement
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, S309 Heavy Chain, S309 Light Chain, ...
著者McCallum, M, Veesler, D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
登録日2024-02-08
公開日2024-03-27
最終更新日2025-01-08
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Quantifying how single dose Ad26.COV2.S vaccine efficacy depends on Spike sequence features.
Nat Commun, 15, 2024
8WLO
DownloadVisualize
BU of 8wlo by Molmil
Cryo-EM structure of SARS-CoV-2 prototype spike protein in complex with hippopotamus ACE2
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme, ...
著者Han, P, Yang, R.R, Li, S.H.
登録日2023-09-30
公開日2024-03-27
最終更新日2024-10-30
実験手法ELECTRON MICROSCOPY (2.62 Å)
主引用文献Molecular basis of hippopotamus ACE2 binding to SARS-CoV-2.
J.Virol., 98, 2024
8WLR
DownloadVisualize
BU of 8wlr by Molmil
Cryo-EM structure of SARS-CoV-2 prototype spike protein receptor-binding domain in complex with hippopotamus ACE2
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme, Spike glycoprotein, ...
著者Han, P, Yang, R.R, Li, S.H.
登録日2023-09-30
公開日2024-03-27
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (3.12 Å)
主引用文献Molecular basis of hippopotamus ACE2 binding to SARS-CoV-2.
J.Virol., 98, 2024
8QZR
DownloadVisualize
BU of 8qzr by Molmil
SARS-CoV-2 delta RBD complexed with BA.4/5-9 Fab
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, BA.4/5-9 heavy chain, BA.4/5-9 light chain, ...
著者Zhou, D, Ren, J, Stuart, D.I.
登録日2023-10-29
公開日2024-04-03
最終更新日2024-11-13
実験手法X-RAY DIFFRACTION (3.77 Å)
主引用文献Emerging variants develop total escape from potent monoclonal antibodies induced by BA.4/5 infection.
Nat Commun, 15, 2024
8S9Z
DownloadVisualize
BU of 8s9z by Molmil
Mpro inhibitors of SARS-CoV-2
分子名称: 3C-like proteinase nsp5, Mpro inhibitor
著者Blankenship, L.R, Liu, W.R.
登録日2023-03-30
公開日2024-04-03
最終更新日2024-11-13
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structure of MPI89 with Mpro of SARS-CoV-2 at 1.85A resolution.
To Be Published
8F2X
DownloadVisualize
BU of 8f2x by Molmil
Crystal structure of antibody WRAIR-2123 in complex with SARS-CoV-2 receptor binding domain
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike protein S1, WRAIR-2123 Fab Heavy chain, ...
著者Sankhala, R.S, Joyce, G.M.
登録日2022-11-08
公開日2024-04-17
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (3.501 Å)
主引用文献Antibody Targeting of Conserved Sites of Vulnerability on the SARS-CoV-2 Spike Receptor-Binding Domain
To Be Published
8J39
DownloadVisualize
BU of 8j39 by Molmil
Crystal structure of SARS-Cov-2 main protease V186F mutant in complex with PF00835231
分子名称: 3C-like proteinase nsp5, N-[(2S)-1-({(2S,3S)-3,4-dihydroxy-1-[(3S)-2-oxopyrrolidin-3-yl]butan-2-yl}amino)-4-methyl-1-oxopentan-2-yl]-4-methoxy-1H-indole-2-carboxamide
著者Zhou, X.L, Lin, C, Zou, X.F, Zhang, J, Li, J.
登録日2023-04-16
公開日2024-04-17
最終更新日2025-05-07
実験手法X-RAY DIFFRACTION (1.66 Å)
主引用文献Structural basis for the inhibition of coronaviral main proteases by PF-00835231.
Acta Biochim.Biophys.Sin., 56, 2024
8J3B
DownloadVisualize
BU of 8j3b by Molmil
Crystal structure of SARS-Cov-2 main protease S46F mutant in complex with PF00835231
分子名称: 3C-like proteinase nsp5, N-[(2S)-1-({(2S,3S)-3,4-dihydroxy-1-[(3S)-2-oxopyrrolidin-3-yl]butan-2-yl}amino)-4-methyl-1-oxopentan-2-yl]-4-methoxy-1H-indole-2-carboxamide
著者Zhou, X.L, Lin, C, Zou, X.F, Zhang, J, Li, J.
登録日2023-04-16
公開日2024-04-17
最終更新日2025-05-07
実験手法X-RAY DIFFRACTION (1.64 Å)
主引用文献Structural basis for the inhibition of coronaviral main proteases by PF-00835231.
Acta Biochim.Biophys.Sin., 56, 2024
8KHC
DownloadVisualize
BU of 8khc by Molmil
SARS-CoV-2 Omicron spike in complex with 5817 Fab
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of 5817 Fab, ...
著者Cao, L, Wang, X.
登録日2023-08-21
公開日2024-04-17
最終更新日2025-06-25
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Identification of a broad sarbecovirus neutralizing antibody targeting a conserved epitope on the receptor-binding domain.
Cell Rep, 43, 2024
8KHD
DownloadVisualize
BU of 8khd by Molmil
The interface structure of Omicron RBD binding to 5817 Fab
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of 5817, Light chain of 5817, ...
著者Cao, L, Wang, X.
登録日2023-08-21
公開日2024-04-17
最終更新日2025-07-02
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Identification of a broad sarbecovirus neutralizing antibody targeting a conserved epitope on the receptor-binding domain.
Cell Rep, 43, 2024
8WZP
DownloadVisualize
BU of 8wzp by Molmil
Crystal structure of SARS-Cov-2 main protease M49I mutant in complex with CCF0058981
分子名称: 2-(benzotriazol-1-yl)-~{N}-[(3-chlorophenyl)methyl]-~{N}-[4-(1~{H}-imidazol-5-yl)phenyl]ethanamide, 3C-like proteinase nsp5
著者Jiang, H.H, Zou, X.F, Zhou, X.L, Zhang, J, Li, J.
登録日2023-11-02
公開日2024-04-17
実験手法X-RAY DIFFRACTION (1.76 Å)
主引用文献Crystal structure of SARS-CoV-2 main protease (M pro ) mutants in complex with the non-covalent inhibitor CCF0058981.
Biochem.Biophys.Res.Commun., 692, 2024
8WZQ
DownloadVisualize
BU of 8wzq by Molmil
Crystal structure of SARS-Cov-2 main protease V186F mutant in complex with CCF0058981
分子名称: 2-(benzotriazol-1-yl)-~{N}-[(3-chlorophenyl)methyl]-~{N}-[4-(1~{H}-imidazol-5-yl)phenyl]ethanamide, 3C-like proteinase nsp5
著者Zou, X.F, Jiang, H.H, Zhou, X.L, Zhang, J, Li, J.
登録日2023-11-02
公開日2024-04-17
実験手法X-RAY DIFFRACTION (1.66 Å)
主引用文献Crystal structure of SARS-CoV-2 main protease (M pro ) mutants in complex with the non-covalent inhibitor CCF0058981.
Biochem.Biophys.Res.Commun., 692, 2024
9EPL
DownloadVisualize
BU of 9epl by Molmil
Mpro from SARS-CoV-2 with 298Q mutation
分子名称: 1,2-ETHANEDIOL, GLYCEROL, Non-structural protein 11, ...
著者Plewka, J, Lis, K, Czarna, A, Pyrc, K, Kantyka, T, Chykunova, Y.
登録日2024-03-18
公開日2024-04-17
最終更新日2024-04-24
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献SARS-CoV-2 M pro oligomerization as a potential target for therapy.
Int.J.Biol.Macromol., 267, 2024
9EPM
DownloadVisualize
BU of 9epm by Molmil
Mpro from SARS-CoV-2 with 4A mutation
分子名称: Non-structural protein 11
著者Plewka, J, Lis, K, Czarna, A, Pyrc, K, Kantyka, T, Chykunova, Y.
登録日2024-03-19
公開日2024-04-17
最終更新日2024-04-24
実験手法X-RAY DIFFRACTION (1.981 Å)
主引用文献SARS-CoV-2 M pro oligomerization as a potential target for therapy.
Int.J.Biol.Macromol., 267, 2024
7YLD
DownloadVisualize
BU of 7yld by Molmil
Two monobodies recognizing the conserved epitopes of SARS-CoV-2 N antigen applicable to the broad COVID-19 diagnosis
分子名称: NN2, Nucleoprotein
著者Hu, M, Du, Y, Sun, R, Hao, Q.
登録日2022-07-26
公開日2024-04-24
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Two monobodies recognizing the conserved epitopes of SARS-CoV-2 N antigen applicable to the broad COVID-19 diagnosis
To Be Published
8UD2
DownloadVisualize
BU of 8ud2 by Molmil
SARS-CoV-2 Nsp15, apo-form
分子名称: Non-structural protein 15
著者Ito, F, Yang, H, Zhou, Z.H, Chen, X.S.
登録日2023-09-28
公開日2024-04-24
最終更新日2024-07-10
実験手法ELECTRON MICROSCOPY (2.33 Å)
主引用文献Structural basis for polyuridine tract recognition by SARS-CoV-2 Nsp15.
Protein Cell, 15, 2024
8UD3
DownloadVisualize
BU of 8ud3 by Molmil
SARS-CoV-2 Nsp15 bound to poly(A/U) RNA, consensus form
分子名称: Non-structural protein 15, RNA (35-MER)
著者Ito, F, Yang, H, Zhou, Z.H, Chen, X.S.
登録日2023-09-28
公開日2024-04-24
最終更新日2025-05-28
実験手法ELECTRON MICROSCOPY (2.67 Å)
主引用文献Structural basis for polyuridine tract recognition by SARS-CoV-2 Nsp15.
Protein Cell, 15, 2024
8WMF
DownloadVisualize
BU of 8wmf by Molmil
Structure of the SARS-CoV-2 EG.5.1 spike glycoprotein (closed-1 state)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
著者Nomai, T, Anraku, Y, Kita, S, Hashiguchi, T, Maenaka, K.
登録日2023-10-03
公開日2024-04-24
最終更新日2024-10-16
実験手法ELECTRON MICROSCOPY (2.51 Å)
主引用文献Virological characteristics of the SARS-CoV-2 Omicron EG.5.1 variant.
Microbiol Immunol, 68, 2024
8XEA
DownloadVisualize
BU of 8xea by Molmil
XBB.1.5 spike protein in complex with BD55-1205
分子名称: BD55-1205 heavy chain, BD55-1205 light chain, Spike glycoprotein
著者Feng, L.L.
登録日2023-12-11
公開日2024-04-24
最終更新日2025-06-25
実験手法ELECTRON MICROSCOPY (3.42 Å)
主引用文献XBB.1.5 spike protein in complex with BD55-1205
To Be Published
8XI6
DownloadVisualize
BU of 8xi6 by Molmil
SARS-CoV-2 Omicron BQ.1.1 Variant Spike Protein Complexed with MO11 Fab
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Ishimaru, H, Nishimura, M, Shigematsu, H, Marini, M.I, Hasegawa, N, Takamiya, R, Iwata, S, Mori, Y.
登録日2023-12-19
公開日2024-04-24
最終更新日2024-10-16
実験手法ELECTRON MICROSCOPY (2.3 Å)
主引用文献Epitopes of an antibody that neutralizes a wide range of SARS-CoV-2 variants in a conserved subdomain 1 of the spike protein.
J.Virol., 98, 2024
9ART
DownloadVisualize
BU of 9art by Molmil
Crystal structure of SARS-CoV-2 main protease A191T mutant in complex with an inhibitor 5h
分子名称: 3C-like proteinase nsp5, N-[(2S)-1-({(1S,2S)-1-(1,3-benzothiazol-2-yl)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}amino)-4-methyl-1-oxopentan-2-yl]-4-methoxy-1H-indole-2-carboxamide
著者Bulut, H, Hattori, S, Hayashi, H, Hasegawa, K, Li, M, Wlodawer, A, Tamamura, H, Mitsuya, H.
登録日2024-02-23
公開日2024-04-24
最終更新日2024-11-13
実験手法X-RAY DIFFRACTION (1.49 Å)
主引用文献Structural and virologic mechanism of the emergence of resistance to M pro inhibitors in SARS-CoV-2.
Proc.Natl.Acad.Sci.USA, 121, 2024

238582

件を2025-07-09に公開中

PDB statisticsPDBj update infoContact PDBjnumon