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coronavirus
Coronavirus, 2020. Modified from the original illustration by David S. Goodsell@RCSB PDB

The recent outbreak of the Novel Coronavirus disease (COVID-19) is a serious threat to people all over the world. In order to understand and develop an effective drug against this virus (Severe Acute Respiratory Syndrome Coronavirus 2: SARS-CoV-2), structural work on the related proteins has already started and the resultant entries are accumulating in the PDB. PDBj provides a portal page for the COVID-19 related entries for our users. New entries will be added simultaneously with the public release from the wwPDB.

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Created: 2020-10-28 (last edited: more than 1 year ago)2022-09-02
9AU1
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BU of 9au1 by Molmil
SARS-CoV-2 XBB.1.5 RBD bound to the VIR-7229 and the S309 Fab fragments
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ...
Authors:Rietz, T, Park, Y.J, Errico, J, Czudnochowski, N, Nix, J.C, Corti, D, Snell, G, Marco, A.D, Pinto, D, Cameroni, E, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler, D, Structural Genomics Consortium (SGC)
Deposit date:2024-02-27
Release date:2024-10-16
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:A potent pan-sarbecovirus neutralizing antibody resilient to epitope diversification.
Cell, 2024
9AU2
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VIR-7229 Fab fragment bound the BA.2.86 spike trimer (global refinement)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, ...
Authors:Tortorici, M.A, Park, Y.J, Veelser, D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2024-02-28
Release date:2024-10-16
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:A potent pan-sarbecovirus neutralizing antibody resilient to epitope diversification.
Cell, 2024
9C80
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Co-structure of SARS-CoV-2 (COVID-19 with covalent inhibitor
Descriptor: (5R,7S,8R)-7-(2-fluorophenyl)-3-[(2-fluorophenyl)carbamoyl]-4,5,6,7-tetrahydropyrazolo[1,5-a]pyrimidine-5-carboxylic acid, 3C-like proteinase nsp5
Authors:Ornelas, E, Knapp, M.S.
Deposit date:2024-06-11
Release date:2024-10-16
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Identification of Potent, Broad-Spectrum Coronavirus Main Protease Inhibitors for Pandemic Preparedness.
J.Med.Chem., 2024
9C8Q
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BU of 9c8q by Molmil
Co-structure of Main Protease of SARS-CoV-2 (COVID-19) with covalent inhibitor
Descriptor: (7P,8S)-3-cyclohexyl-7-(3-methylpyridin-2-yl)pyrazolo[1,5-a]pyrimidine, 3C-like proteinase nsp5
Authors:Knapp, M.S, Ornelas, E.
Deposit date:2024-06-12
Release date:2024-10-16
Method:X-RAY DIFFRACTION (1.692 Å)
Cite:Identification of Potent, Broad-Spectrum Coronavirus Main Protease Inhibitors for Pandemic Preparedness.
J.Med.Chem., 2024
9CMJ
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BU of 9cmj by Molmil
Room-temperature X-ray structure of SARS-CoV-2 main protease drug resistant mutant (L50F, E166V)
Descriptor: 3C-like proteinase nsp5
Authors:Kovalevsky, A, Coates, L, Gerlits, O.
Deposit date:2024-07-15
Release date:2024-10-16
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Effects of SARS-CoV-2 Main Protease Mutations at Positions L50, E166, and L167 Rendering Resistance to Covalent and Noncovalent Inhibitors.
J.Med.Chem., 2024
9CMN
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Room-temperature X-ray structure of SARS-CoV-2 main protease drug resistant mutant (E166A, L167F)
Descriptor: 3C-like proteinase nsp5
Authors:Kovalevsky, A, Coates, L, Gerlits, O.
Deposit date:2024-07-15
Release date:2024-10-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:Effects of SARS-CoV-2 Main Protease Mutations at Positions L50, E166, and L167 Rendering Resistance to Covalent and Noncovalent Inhibitors.
J.Med.Chem., 2024
9CMS
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BU of 9cms by Molmil
Room-temperature X-ray structure of SARS-CoV-2 main protease drug resistant mutant (E166V) in complex with ensitrelvir (ESV)
Descriptor: 3C-like proteinase nsp5, 6-[(6-chloranyl-2-methyl-indazol-5-yl)amino]-3-[(1-methyl-1,2,4-triazol-3-yl)methyl]-1-[[2,4,5-tris(fluoranyl)phenyl]methyl]-1,3,5-triazine-2,4-dione
Authors:Kovalevsky, A, Coates, L, Gerlits, O.
Deposit date:2024-07-15
Release date:2024-10-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:Effects of SARS-CoV-2 Main Protease Mutations at Positions L50, E166, and L167 Rendering Resistance to Covalent and Noncovalent Inhibitors.
J.Med.Chem., 2024
9CMU
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BU of 9cmu by Molmil
Room-temperature X-ray structure of SARS-CoV-2 main protease drug resistant mutant (L50F, E166V) in complex with ensitrelvir (ESV)
Descriptor: 3C-like proteinase nsp5, 6-[(6-chloranyl-2-methyl-indazol-5-yl)amino]-3-[(1-methyl-1,2,4-triazol-3-yl)methyl]-1-[[2,4,5-tris(fluoranyl)phenyl]methyl]-1,3,5-triazine-2,4-dione
Authors:Kovalevsky, A, Coates, L, Gerlits, O.
Deposit date:2024-07-15
Release date:2024-10-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:Effects of SARS-CoV-2 Main Protease Mutations at Positions L50, E166, and L167 Rendering Resistance to Covalent and Noncovalent Inhibitors.
J.Med.Chem., 2024
9GS4
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SARS-CoV-2 methyltransferase nsp10-16 in complex with SAM and theophylline derivative LAS 54571130
Descriptor: 1,2-ETHANEDIOL, 2'-O-methyltransferase nsp16, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ...
Authors:Kremling, V, Sprenger, J, Oberthuer, D, Kiene, A.
Deposit date:2024-09-13
Release date:2024-10-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of SARS-CoV-2 methyltransferase nsp10-16 with Cap0-site binders
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PDB entries from 2024-10-16

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