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Open data
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Basic information
Entry | Database: PDB / ID: 6apo | ||||||
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Title | Anti-Marburgvirus Nucleoprotein Single Domain Antibody A | ||||||
![]() | Anti-Marburgvirus Nucleoprotein Single Domain Antibody A | ||||||
![]() | IMMUNE SYSTEM / single domain antibody | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Taylor, A.B. / Garza, J.A. | ||||||
![]() | ![]() Title: Unveiling a Drift Resistant Cryptotope withinMarburgvirusNucleoprotein Recognized by Llama Single-Domain Antibodies. Authors: Garza, J.A. / Taylor, A.B. / Sherwood, L.J. / Hart, P.J. / Hayhurst, A. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 64.7 KB | Display | ![]() |
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PDB format | ![]() | 45.6 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Related structure data | ![]() 4w2oC ![]() 4w2pC ![]() 4w2qC ![]() 6appC ![]() 6apqC ![]() 1yc7S S: Starting model for refinement C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Components
#1: Antibody | Mass: 14215.889 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() Description: Semi-synthetic single pot library Nomad 1 based upon Lama glama Plasmid: pecan73 / Production host: ![]() ![]() |
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#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.12 Å3/Da / Density % sol: 42.08 % |
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Crystal grow | Temperature: 295 K / Method: vapor diffusion, sitting drop / Details: 25% polyethylene glycol 1000, 0.1M Tris-HCl pH 8.5 |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 315 / Detector: CCD / Date: Oct 24, 2010 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.97917 Å / Relative weight: 1 |
Reflection | Resolution: 1.168→41.6 Å / Num. obs: 40045 / % possible obs: 95.7 % / Redundancy: 6.6 % / Biso Wilson estimate: 9.3 Å2 / Rpim(I) all: 0.028 / Rsym value: 0.067 / Net I/σ(I): 17.6 |
Reflection shell | Resolution: 1.17→1.23 Å / Redundancy: 3.2 % / Mean I/σ(I) obs: 3.4 / Num. unique obs: 4261 / Rpim(I) all: 0.198 / Rsym value: 0.282 / % possible all: 71.3 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 1YC7 Resolution: 1.168→37.81 Å / SU ML: 0.08 / Cross valid method: THROUGHOUT / σ(F): 1.38 / Phase error: 14.94
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 14.8 Å2 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.168→37.81 Å
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Refine LS restraints |
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LS refinement shell |
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