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Open data
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Basic information
Entry | Database: PDB / ID: 3uky | ||||||
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Title | Mouse importin alpha: yeast CBP80 cNLS complex | ||||||
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![]() | PROTEIN TRANSPORT/PROTEIN BINDING / Arm repeat / Armadillo repeat / Nuclear transport / nuclear localisation signal binding / importin beta binding / PROTEIN TRANSPORT-PROTEIN BINDING complex | ||||||
Function / homology | ![]() Processing of Intronless Pre-mRNAs / nuclear cap binding complex / RNA cap binding / Sensing of DNA Double Strand Breaks / Transport of Mature mRNA derived from an Intron-Containing Transcript / entry of viral genome into host nucleus through nuclear pore complex via importin / primary miRNA processing / regulation of mRNA processing / positive regulation of viral life cycle / mRNA 3'-end processing ...Processing of Intronless Pre-mRNAs / nuclear cap binding complex / RNA cap binding / Sensing of DNA Double Strand Breaks / Transport of Mature mRNA derived from an Intron-Containing Transcript / entry of viral genome into host nucleus through nuclear pore complex via importin / primary miRNA processing / regulation of mRNA processing / positive regulation of viral life cycle / mRNA 3'-end processing / NLS-dependent protein nuclear import complex / postsynapse to nucleus signaling pathway / commitment complex / nuclear-transcribed mRNA catabolic process, nonsense-mediated decay / response to osmotic stress / nuclear-transcribed mRNA catabolic process / nuclear import signal receptor activity / Processing of Capped Intron-Containing Pre-mRNA / nuclear localization sequence binding / Formation of the Early Elongation Complex / mRNA Capping / NLS-bearing protein import into nucleus / RNA Polymerase II Pre-transcription Events / Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC) / Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC) / 7-methylguanosine mRNA capping / mRNA export from nucleus / mRNA transcription by RNA polymerase II / mRNA splicing, via spliceosome / cytoplasmic stress granule / protein import into nucleus / host cell / DNA-binding transcription factor binding / postsynaptic density / mRNA binding / glutamatergic synapse / perinuclear region of cytoplasm / nucleoplasm / nucleus / cytosol Similarity search - Function | ||||||
Biological species | ![]() ![]() ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Marfori, M. / Forwood, J.K. / Lonhienne, T.G. / Kobe, B. | ||||||
![]() | ![]() Title: Structural Basis of High-Affinity Nuclear Localization Signal Interactions with Importin-alpha Authors: Marfori, M. / Lonhienne, T.G. / Forwood, J.K. / Kobe, B. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 188.3 KB | Display | ![]() |
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PDB format | ![]() | 148.3 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 446.6 KB | Display | ![]() |
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Full document | ![]() | 453.3 KB | Display | |
Data in XML | ![]() | 19.2 KB | Display | |
Data in CIF | ![]() | 27.3 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 3ukwC ![]() 3ukxC ![]() 3ukzC ![]() 3ul0C ![]() 3ul1C ![]() 1pjnS C: citing same article ( S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 55268.473 Da / Num. of mol.: 1 / Fragment: UNP Residues 70-529 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() |
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#2: Protein/peptide | Mass: 4081.608 Da / Num. of mol.: 1 / Fragment: yCBP80 cNLS peptide, residues 1-30 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() Strain: S288c / Gene: CBP80 / Production host: ![]() ![]() |
#3: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.91 Å3/Da / Density % sol: 57.76 % |
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Crystal grow | Temperature: 293 K / Method: vapor diffusion, hanging drop / pH: 7 Details: 0.8M sodium citrate, 10mM DTT, 0.1M HEPES, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 315r / Detector: CCD / Date: Jul 23, 2009 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.953693 Å / Relative weight: 1 |
Reflection | Resolution: 2.35→50.57 Å / Num. obs: 29432 / % possible obs: 68.4 % / Observed criterion σ(F): 1 / Observed criterion σ(I): 1 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 1PJN Resolution: 2.35→43.18 Å / Occupancy max: 1 / Occupancy min: 0.39 / SU ML: 0.29 / σ(F): 0 / Phase error: 20.67 / Stereochemistry target values: ML
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Solvent computation | Shrinkage radii: 1.06 Å / VDW probe radii: 1.3 Å / Solvent model: FLAT BULK SOLVENT MODEL / Bsol: 27.981 Å2 / ksol: 0.346 e/Å3 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso max: 237.8 Å2 / Biso mean: 38.6603 Å2 / Biso min: 9.78 Å2
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Refinement step | Cycle: LAST / Resolution: 2.35→43.18 Å
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Refine LS restraints |
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LS refinement shell | Refine-ID: X-RAY DIFFRACTION / Total num. of bins used: 10
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Refinement TLS params. | Method: refined / Refine-ID: X-RAY DIFFRACTION
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Refinement TLS group |
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