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Yorodumi- PDB-2r8a: Crystal structure of the long-chain fatty acid transporter FadL m... -
+Open data
-Basic information
Entry | Database: PDB / ID: 2r8a | ||||||
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Title | Crystal structure of the long-chain fatty acid transporter FadL mutant delta N8 | ||||||
Components | Long-chain fatty acid transport protein | ||||||
Keywords | TRANSPORT PROTEIN / beta barrel / outer membrane protein / Lipid transport / Phage recognition / Transmembrane / Transport | ||||||
Function / homology | Function and homology information long-chain fatty acid transporting porin activity / ligand-gated channel activity / cell outer membrane Similarity search - Function | ||||||
Biological species | Escherichia coli (E. coli) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 3 Å | ||||||
Authors | Hearn, E.M. / Patel, D.R. / Lepore, B.W. / Indic, M. / van den Berg, B. | ||||||
Citation | Journal: Proc.Natl.Acad.Sci.USA / Year: 2011 Title: From the Cover: Ligand-gated diffusion across the bacterial outer membrane. Authors: Lepore, B.W. / Indic, M. / Pham, H. / Hearn, E.M. / Patel, D.R. / van den Berg, B. #1: Journal: Science / Year: 2004 Title: Crystal structure of the long-chain fatty acid transporter FadL Authors: van den Berg, B. / Black, P.N. / Clemons Jr., W.M. / Rapoport, T.A. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2r8a.cif.gz | 152 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2r8a.ent.gz | 119 KB | Display | PDB format |
PDBx/mmJSON format | 2r8a.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/r8/2r8a ftp://data.pdbj.org/pub/pdb/validation_reports/r8/2r8a | HTTPS FTP |
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-Related structure data
Related structure data | 2r89C 3pf1C 3pgrC 3pgsC 3pguC 1t16S 2r4m S: Starting model for refinement C: citing same article (ref.) |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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2 |
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Unit cell |
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-Components
#1: Protein | Mass: 45801.949 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Escherichia coli (E. coli) / Gene: fadL, ttr / Plasmid: pBAD22 / Production host: Escherichia coli (E. coli) / Strain (production host): C43(DE3) / References: UniProt: P10384 #2: Chemical | ChemComp-C8E / ( |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 3.15 Å3/Da / Density % sol: 60.94 % |
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Crystal grow | Temperature: 295 K / Method: vapor diffusion, hanging drop / pH: 7.5 Details: 20% PEG 10000, 8% ethylene glycol, 0.1M Hepes, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: SYNCHROTRON / Site: NSLS / Beamline: X6A / Wavelength: 1.1 Å |
Detector | Type: ADSC QUANTUM 210 / Detector: CCD / Date: Oct 6, 2005 |
Radiation | Monochromator: Si(111) channel cut monochromator / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.1 Å / Relative weight: 1 |
Reflection | Resolution: 3→37.93 Å / Num. all: 17938 / Num. obs: 17938 / % possible obs: 80.6 % / Observed criterion σ(F): 0 / Observed criterion σ(I): 2 / Redundancy: 4.1 % / Rmerge(I) obs: 0.052 / Net I/σ(I): 13.9 |
Reflection shell | Resolution: 3→3.11 Å / Redundancy: 3.7 % / Rmerge(I) obs: 0.511 / Mean I/σ(I) obs: 2.9 / Num. unique all: 1514 / Rsym value: 0.511 / % possible all: 68.3 |
-Processing
Software |
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Refinement | Method to determine structure: MOLECULAR REPLACEMENT Starting model: PDB ENTRY 1T16 Resolution: 3→10 Å / Cross valid method: THROUGHOUT / σ(F): 0 / σ(I): 0 / Stereochemistry target values: Engh & Huber
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Displacement parameters | Biso mean: 46.69 Å2
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Refine analyze |
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Refinement step | Cycle: LAST / Resolution: 3→10 Å
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Refine LS restraints |
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LS refinement shell | Refine-ID: X-RAY DIFFRACTION
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