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- PDB-1rmf: STRUCTURES OF A MONOCLONAL ANTI-ICAM-1 ANTIBODY R6.5 FRAGMENT AT ... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1rmf | ||||||
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Title | STRUCTURES OF A MONOCLONAL ANTI-ICAM-1 ANTIBODY R6.5 FRAGMENT AT 2.8 ANGSTROMS RESOLUTION | ||||||
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Function / homology | ![]() ![]() ![]() ![]() | ||||||
Biological species | ![]() ![]() ![]() | ||||||
Method | ![]() | ||||||
![]() | Jedrzejas, M.J. / Luo, M. | ||||||
![]() | ![]() Title: Structure of a monoclonal anti-ICAM-1 antibody R6.5 Fab fragment at 2.8 A resolution. Authors: Jedrzejas, M.J. / Miglietta, J. / Griffin, J.A. / Luo, M. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 113.7 KB | Display | ![]() |
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PDB format | ![]() | 88 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Atom site foot note | 1: CIS PROLINE - PRO L 8 / 2: CIS PROLINE - PRO L 100 / 3: CIS PROLINE - PRO L 146 / 4: CIS PROLINE - PRO H 9 5: ALA H 131 - PRO H 132 OMEGA = 220.96 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION 6: CIS PROLINE - PRO H 153 / 7: CIS PROLINE - PRO H 155 8: TRP H 194 - PRO H 195 OMEGA = 51.63 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION |
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Components
#1: Antibody | Mass: 24068.684 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() |
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#2: Antibody | Mass: 23114.936 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() |
#3: Water | ChemComp-HOH / ![]() |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.69 Å3/Da / Density % sol: 54.26 % | |||||||||||||||
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Crystal grow![]() | *PLUS pH: 8.5 / Method: other | |||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Reflection | Num. obs: 12598 / % possible obs: 84.1 % / Observed criterion σ(I): 2 |
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Reflection | *PLUS Observed criterion σ(I): 25.2 / Num. measured all: 32642 / Rmerge(I) obs: 0.064 |
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Processing
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Refinement | Resolution: 2.8→6.5 Å / σ(F): 4 /
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Displacement parameters | Biso mean: 16.5 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.8→6.5 Å
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Refine LS restraints |
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Refine LS restraints | *PLUS Type: x_dihedral_angle_deg / Dev ideal: 28.2 |