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Yorodumi- PDB-1cbv: AN AUTOANTIBODY TO SINGLE-STRANDED DNA: COMPARISON OF THE THREE-D... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1cbv | ||||||
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Title | AN AUTOANTIBODY TO SINGLE-STRANDED DNA: COMPARISON OF THE THREE-DIMENSIONAL STRUCTURES OF THE UNLIGANDED FAB AND A DEOXYNUCLEOTIDE-FAB COMPLEX | ||||||
Components |
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Keywords | IMMUNE SYSTEM/DNA / PROTEIN-DNA COMPLEX / SINGLE STRAND / IMMUNE SYSTEM-DNA COMPLEX | ||||||
Function / homology | Function and homology information Initial triggering of complement / Classical antibody-mediated complement activation / FCGR activation / Role of phospholipids in phagocytosis / Regulation of Complement cascade / Regulation of actin dynamics for phagocytic cup formation / humoral immune response mediated by circulating immunoglobulin / phagocytosis, recognition / positive regulation of type IIa hypersensitivity / positive regulation of type I hypersensitivity ...Initial triggering of complement / Classical antibody-mediated complement activation / FCGR activation / Role of phospholipids in phagocytosis / Regulation of Complement cascade / Regulation of actin dynamics for phagocytic cup formation / humoral immune response mediated by circulating immunoglobulin / phagocytosis, recognition / positive regulation of type IIa hypersensitivity / positive regulation of type I hypersensitivity / Fc-gamma receptor I complex binding / phagocytosis, engulfment / immunoglobulin complex, circulating / IgG immunoglobulin complex / immunoglobulin receptor binding / immunoglobulin mediated immune response / positive regulation of phagocytosis / complement activation, classical pathway / antigen binding / positive regulation of immune response / antibacterial humoral response / extracellular space / extracellular region / metal ion binding / plasma membrane Similarity search - Function | ||||||
Biological species | Mus musculus (house mouse) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 2.66 Å | ||||||
Authors | Herron, J.N. / He, X.M. / Ballard, D.W. / Blier, P.R. / Pace, P.E. / Bothwell, A.L.M. / Voss Junior, E.W. / Edmundson, A.B. | ||||||
Citation | Journal: Proteins / Year: 1991 Title: An autoantibody to single-stranded DNA: comparison of the three-dimensional structures of the unliganded Fab and a deoxynucleotide-Fab complex. Authors: Herron, J.N. / He, X.M. / Ballard, D.W. / Blier, P.R. / Pace, P.E. / Bothwell, A.L. / Voss Jr., E.W. / Edmundson, A.B. #1: Journal: Mol.Immunol. / Year: 1985 Title: Crystallographic Characterization of the FAB Fragment of a Monoclonal Anti-SS- DNA Antibody Authors: Gibson, A.L. / Herron, J.N. / Ballard, D.W. / Voss, E.W. / He, X.M. / Patrick, V.A. / Edmundson, A.B. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1cbv.cif.gz | 92.2 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1cbv.ent.gz | 73.8 KB | Display | PDB format |
PDBx/mmJSON format | 1cbv.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/cb/1cbv ftp://data.pdbj.org/pub/pdb/validation_reports/cb/1cbv | HTTPS FTP |
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-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: DNA chain | Mass: 867.621 Da / Num. of mol.: 1 / Source method: obtained synthetically |
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#2: Antibody | Mass: 24109.773 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Mus musculus (house mouse) / References: UniProt: A2NHM3*PLUS |
#3: Antibody | Mass: 23553.316 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Mus musculus (house mouse) / References: UniProt: P01867*PLUS |
Compound details | TURNS L2, L4, AND L10 CONTAIN ONLY 3 RESIDUES. |
Sequence details | THE PROTEIN WAS SEQUENCED BY D. W. BALLARD, P. R. BLIER, P. E. PACE, AND A. L. M. BOTHWELL. SEE ...THE PROTEIN WAS SEQUENCED BY D. W. BALLARD, P. R. BLIER, P. E. PACE, AND A. L. M. BOTHWELL. SEE REFERENCE 1 ABOVE. |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.36 Å3/Da / Density % sol: 47.97 % |
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Crystal grow | *PLUS Temperature: 15 ℃ / pH: 7.6 / Method: unknown |
Components of the solutions | *PLUS Conc.: 1.7 M / Common name: ammonium sulfate |
-Data collection
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Highest resolution: 2.66 Å / Num. obs: 8624 / % possible obs: 64 % / Observed criterion σ(I): 1.5 / Num. measured all: 13413 |
-Processing
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Refinement | Resolution: 2.66→6 Å /
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Refinement step | Cycle: LAST / Resolution: 2.66→6 Å
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