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Yorodumi- PDB-1cag: CRYSTAL AND MOLECULAR STRUCTURE OF A COLLAGEN-LIKE PEPTIDE AT 1.9... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1cag | ||||||
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Title | CRYSTAL AND MOLECULAR STRUCTURE OF A COLLAGEN-LIKE PEPTIDE AT 1.9 ANGSTROM RESOLUTION | ||||||
Components | COLLAGEN-LIKE PEPTIDE | ||||||
Keywords | COLLAGEN | ||||||
Function / homology | ACETIC ACID Function and homology information | ||||||
Method | X-RAY DIFFRACTION / Resolution: 1.85 Å | ||||||
Authors | Bella, J. / Eaton, M. / Brodsky, B. / Berman, H.M. | ||||||
Citation | Journal: Science / Year: 1994 Title: Crystal and molecular structure of a collagen-like peptide at 1.9 A resolution. Authors: Bella, J. / Eaton, M. / Brodsky, B. / Berman, H.M. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1cag.cif.gz | 24.2 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1cag.ent.gz | 20.1 KB | Display | PDB format |
PDBx/mmJSON format | 1cag.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1cag_validation.pdf.gz | 397.5 KB | Display | wwPDB validaton report |
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Full document | 1cag_full_validation.pdf.gz | 401.9 KB | Display | |
Data in XML | 1cag_validation.xml.gz | 4 KB | Display | |
Data in CIF | 1cag_validation.cif.gz | 5.6 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/ca/1cag ftp://data.pdbj.org/pub/pdb/validation_reports/ca/1cag | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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Atom site foot note | 1: CIS HYDROXYPROLINE - HYP B 32 / 2: CIS HYDROXYPROLINE - HYP C 62 |
-Components
#1: Protein/peptide | Mass: 2704.854 Da / Num. of mol.: 3 Source method: isolated from a genetically manipulated source #2: Chemical | ChemComp-ACY / #3: Water | ChemComp-HOH / | Compound details | HYDROGEN BONDS BETWEEN PEPTIDE CHAINS FOLLOW THE RICH AND CRICK MODEL II FOR COLLAGEN. THESE HAVE ...HYDROGEN BONDS BETWEEN PEPTIDE CHAINS FOLLOW THE RICH AND CRICK MODEL II FOR COLLAGEN. THESE HAVE BEEN PRESENTED ON *CONECT* RECORDS IN THIS ENTRY. AT THE ALANINE SUBSTITUTI | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 1.88 Å3/Da / Density % sol: 34.73 % | ||||||||||||||||||||||||||||||
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Crystal grow | *PLUS Temperature: 4 ℃ / Method: vapor diffusion, hanging drop | ||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Highest resolution: 1.85 Å / Num. obs: 5595 / % possible obs: 100 % / Observed criterion σ(I): 1 |
-Processing
Software |
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Refinement | Resolution: 1.85→8 Å / σ(F): 3 /
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Refinement step | Cycle: LAST / Resolution: 1.85→8 Å
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Refine LS restraints |
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Software | *PLUS Name: X-PLOR / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS Rfactor obs: 0.197 / Rfactor Rwork: 0.197 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS Type: x_angle_d / Dev ideal: 2.3 |