+
Open data
-
Basic information
Entry | Database: PDB / ID: 1cgd | ||||||
---|---|---|---|---|---|---|---|
Title | HYDRATION STRUCTURE OF A COLLAGEN PEPTIDE | ||||||
![]() | COLLAGEN-LIKE PEPTIDE | ||||||
![]() | COLLAGEN / COLLAGEN HYDRATION / HYDROXYPROLINE / CONNECTIVE TISSUE / EXTRACELLULAR MATRIX | ||||||
Function / homology | ACETIC ACID![]() | ||||||
Method | ![]() | ||||||
![]() | Bella, J. / Brodsky, B. / Berman, H.M. | ||||||
![]() | ![]() Title: Hydration structure of a collagen peptide. Authors: Bella, J. / Brodsky, B. / Berman, H.M. #1: ![]() Title: Crystal and Molecular Structure of a Collagen-Like Peptide at 1.9 A Resolution Authors: Bella, J. / Eaton, M. / Brodsky, B. / Berman, H.M. | ||||||
History |
|
-
Structure visualization
Structure viewer | Molecule: ![]() ![]() |
---|
-
Downloads & links
-
Download
PDBx/mmCIF format | ![]() | 25.9 KB | Display | ![]() |
---|---|---|---|---|
PDB format | ![]() | 22.4 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 391.7 KB | Display | ![]() |
---|---|---|---|---|
Full document | ![]() | 391.6 KB | Display | |
Data in XML | ![]() | 3.2 KB | Display | |
Data in CIF | ![]() | 5 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
---|
-
Links
-
Assembly
Deposited unit | ![]()
| ||||||||
---|---|---|---|---|---|---|---|---|---|
1 |
| ||||||||
Unit cell |
|
-
Components
#1: Protein/peptide | Mass: 2704.854 Da / Num. of mol.: 3 Source method: isolated from a genetically manipulated source Details: HYDRATION ANALYSIS #2: Chemical | ChemComp-ACY / #3: Water | ChemComp-HOH / | Compound details | HYDROGEN BONDS BETWEEN PEPTIDE CHAINS FOLLOW THE RICH AND CRICK MODEL II FOR COLLAGEN. AT THE ...HYDROGEN BONDS BETWEEN PEPTIDE CHAINS FOLLOW THE RICH AND CRICK MODEL II FOR COLLAGEN. AT THE ALANINE SUBSTITUTI | |
---|
-Experimental details
-Experiment
Experiment | Method: ![]() |
---|
-
Sample preparation
Crystal | Density Matthews: 1.88 Å3/Da / Density % sol: 34.73 % | ||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Crystal grow | *PLUS Temperature: 4 ℃ / Method: vapor diffusion, hanging drop / Details: Bella, J., (1994) Science, 266, 75. | ||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
|
-Data collection
Diffraction source | Wavelength: 1.5418 |
---|---|
Detector | Type: ENRAF-NONIUS FAST / Detector: DIFFRACTOMETER |
Radiation | Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Resolution: 1.85→86.7 Å / Num. obs: 5595 / % possible obs: 99.9 % / Observed criterion σ(I): 0 |
-
Processing
Software |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Resolution: 1.85→12.5 Å / σ(F): 1
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 11 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.85→12.5 Å
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints |
|