+Open data
-Basic information
Entry | Database: EMDB / ID: EMD-11903 | |||||||||
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Title | Staphylococcus aureus 70S after 50 minutes incubation at 37C | |||||||||
Map data | ||||||||||
Sample |
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Keywords | Ribosome / H68 / translation / protein synthesis | |||||||||
Function / homology | Function and homology information large ribosomal subunit / small ribosomal subunit / 5S rRNA binding / transferase activity / tRNA binding / rRNA binding / ribosome / structural constituent of ribosome / translation / ribonucleoprotein complex ...large ribosomal subunit / small ribosomal subunit / 5S rRNA binding / transferase activity / tRNA binding / rRNA binding / ribosome / structural constituent of ribosome / translation / ribonucleoprotein complex / mRNA binding / zinc ion binding / cytoplasm Similarity search - Function | |||||||||
Biological species | Staphylococcus aureus (bacteria) | |||||||||
Method | single particle reconstruction / cryo EM / Resolution: 2.86 Å | |||||||||
Authors | Cimicata G / Bashan A / Yonath A | |||||||||
Funding support | 1 items
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Citation | Journal: To Be Published Title: Staphylococcus aureus 50S after 30 minutes incubation a 37C Authors: Cimicata G / Bashan A / Yonath A | |||||||||
History |
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-Structure visualization
Movie |
Movie viewer |
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Structure viewer | EM map: SurfViewMolmilJmol/JSmol |
Supplemental images |
-Downloads & links
-EMDB archive
Map data | emd_11903.map.gz | 336.9 MB | EMDB map data format | |
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Header (meta data) | emd-11903-v30.xml emd-11903.xml | 61.8 KB 61.8 KB | Display Display | EMDB header |
Images | emd_11903.png | 117.4 KB | ||
Filedesc metadata | emd-11903.cif.gz | 11.8 KB | ||
Others | emd_11903_additional_1.map.gz | 395.4 MB | ||
Archive directory | http://ftp.pdbj.org/pub/emdb/structures/EMD-11903 ftp://ftp.pdbj.org/pub/emdb/structures/EMD-11903 | HTTPS FTP |
-Related structure data
Related structure data | 7aspMC 7asmC 7asnC 7asoC M: atomic model generated by this map C: citing same article (ref.) |
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Similar structure data |
-Links
EMDB pages | EMDB (EBI/PDBe) / EMDataResource |
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Related items in Molecule of the Month |
-Map
File | Download / File: emd_11903.map.gz / Format: CCP4 / Size: 421.9 MB / Type: IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Projections & slices | Image control
Images are generated by Spider. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Voxel size | X=Y=Z: 0.85 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Density |
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Symmetry | Space group: 1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Details | EMDB XML:
CCP4 map header:
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-Supplemental data
-Additional map: #1
File | emd_11903_additional_1.map | ||||||||||||
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Projections & Slices |
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Density Histograms |
-Sample components
+Entire : 70S
+Supramolecule #1: 70S
+Macromolecule #1: 23S rRNA
+Macromolecule #2: 16S rRNA
+Macromolecule #3: 5S rRNA
+Macromolecule #4: 50S ribosomal protein L33,50S ribosomal protein L30
+Macromolecule #5: 50S ribosomal protein L34
+Macromolecule #6: 50S ribosomal protein L35
+Macromolecule #7: 50S ribosomal protein L36
+Macromolecule #8: 30S ribosomal protein S10
+Macromolecule #9: 30S ribosomal protein S11
+Macromolecule #10: 30S ribosomal protein S12
+Macromolecule #11: 50S ribosomal protein L2
+Macromolecule #12: 30S ribosomal protein S13
+Macromolecule #13: 50S ribosomal protein L3
+Macromolecule #14: 50S ribosomal protein L4
+Macromolecule #15: 30S ribosomal protein S14 type Z
+Macromolecule #16: 30S ribosomal protein S15
+Macromolecule #17: 30S ribosomal protein S16
+Macromolecule #18: 50S ribosomal protein L6
+Macromolecule #19: 50S ribosomal protein L13
+Macromolecule #20: 30S ribosomal protein S17
+Macromolecule #21: 50S ribosomal protein L14
+Macromolecule #22: 30S ribosomal protein S18
+Macromolecule #23: 30S ribosomal protein S20
+Macromolecule #24: 50S ribosomal protein L15
+Macromolecule #25: 30S ribosomal protein S3
+Macromolecule #26: 50S ribosomal protein L16
+Macromolecule #27: 50S ribosomal protein L17
+Macromolecule #28: 30S ribosomal protein S4
+Macromolecule #29: 30S ribosomal protein S5
+Macromolecule #30: 50S ribosomal protein L18
+Macromolecule #31: 30S ribosomal protein S6
+Macromolecule #32: 50S ribosomal protein L19
+Macromolecule #33: 30S ribosomal protein S8
+Macromolecule #34: 50S ribosomal protein L20
+Macromolecule #35: 30S ribosomal protein S7
+Macromolecule #36: 50S ribosomal protein L21
+Macromolecule #37: 30S ribosomal protein S9
+Macromolecule #38: 50S ribosomal protein L22
+Macromolecule #39: 50S ribosomal protein L23
+Macromolecule #40: 50S ribosomal protein L24
+Macromolecule #41: 50S ribosomal protein L25
+Macromolecule #42: 50S ribosomal protein L27
+Macromolecule #43: 50S ribosomal protein L28
+Macromolecule #44: 50S ribosomal protein L29
+Macromolecule #45: 50S ribosomalprotein L32p
+Macromolecule #46: 50S ribosomal protein L5
-Experimental details
-Structure determination
Method | cryo EM |
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Processing | single particle reconstruction |
Aggregation state | particle |
-Sample preparation
Buffer | pH: 7.6 |
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Grid | Model: Quantifoil R1.2/1.3 / Material: COPPER / Mesh: 200 |
Vitrification | Cryogen name: ETHANE / Chamber humidity: 100 % / Chamber temperature: 277 K / Instrument: FEI VITROBOT MARK IV |
-Electron microscopy
Microscope | FEI TITAN KRIOS |
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Electron beam | Acceleration voltage: 300 kV / Electron source: FIELD EMISSION GUN |
Electron optics | Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELDBright-field microscopy |
Image recording | Film or detector model: GATAN K2 SUMMIT (4k x 4k) / Average electron dose: 47.0 e/Å2 |
Experimental equipment | Model: Titan Krios / Image courtesy: FEI Company |
-Image processing
Particle selection | Number selected: 383752 |
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Startup model | Type of model: PDB ENTRY |
Initial angle assignment | Type: NOT APPLICABLE |
Final angle assignment | Type: NOT APPLICABLE |
Final reconstruction | Resolution.type: BY AUTHOR / Resolution: 2.86 Å / Resolution method: FSC 0.143 CUT-OFF / Number images used: 192105 |