+Open data
Loading...
-Basic information
Entry | Database: EMDB / ID: EMD-11902 | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Title | Staphylococcus aureus 70S after 30 minutes incubation at 37C | |||||||||||||||
Map data | ||||||||||||||||
Sample |
| |||||||||||||||
Keywords | Ribosome / H68 / translation / protein synthesis | |||||||||||||||
Function / homology | Function and homology information large ribosomal subunit / small ribosomal subunit / ribosomal large subunit assembly / tRNA binding / rRNA binding / ribosome / structural constituent of ribosome / translation / ribonucleoprotein complex / mRNA binding ...large ribosomal subunit / small ribosomal subunit / ribosomal large subunit assembly / tRNA binding / rRNA binding / ribosome / structural constituent of ribosome / translation / ribonucleoprotein complex / mRNA binding / zinc ion binding / cytoplasm Similarity search - Function Ribosomal protein L31 type B / Type-1 KH domain profile. / : / Ribosomal protein S14, type Z / Ribosomal protein L31 signature. / Ribosomal protein L31 / Ribosomal protein L31 superfamily / Ribosomal protein L31 / Ribosomal protein L16 signature 1. / : ...Ribosomal protein L31 type B / Type-1 KH domain profile. / : / Ribosomal protein S14, type Z / Ribosomal protein L31 signature. / Ribosomal protein L31 / Ribosomal protein L31 superfamily / Ribosomal protein L31 / Ribosomal protein L16 signature 1. / : / Ribosomal protein L6, conserved site / Ribosomal protein L6 signature 1. / Ribosomal protein L16, conserved site / Ribosomal protein L16 signature 2. / Ribosomal protein L17 signature. / Ribosomal protein L28/L24 superfamily / Ribosomal protein L36 signature. / : / : / Ribosomal protein L28 / Ribosomal protein L33, conserved site / Ribosomal protein L33 signature. / Ribosomal protein L5, bacterial-type / Ribosomal protein L6, bacterial-type / Ribosomal protein S14/S29 / Ribosomal protein L36 / Ribosomal protein L36 superfamily / Ribosomal protein L36 / Ribosomal protein S3, bacterial-type / Ribosomal protein S6, conserved site / Ribosomal protein L20 signature. / Ribosomal protein S6 signature. / Ribosomal protein S19, bacterial-type / Ribosomal protein S13, bacterial-type / Ribosomal protein L27, conserved site / Ribosomal protein L27 signature. / Ribosomal protein S7, bacterial/organellar-type / Ribosomal protein S11, bacterial-type / Ribosomal protein S20 / Ribosomal protein S20 superfamily / Ribosomal protein S20 / Ribosomal protein S9, bacterial/plastid / Ribosomal protein S4, bacterial-type / 30S ribosomal protein S17 / Ribosomal protein S5, bacterial-type / Ribosomal protein L14P, bacterial-type / Ribosomal protein L34, conserved site / Ribosomal protein L34 signature. / Ribosomal protein S6, plastid/chloroplast / Ribosomal L28 family / Ribosomal protein L33 / Ribosomal protein L33 / Ribosomal protein L28/L24 / Ribosomal protein L30, bacterial-type / Ribosomal protein L33 superfamily / Ribosomal protein L16 / Ribosomal protein S18, conserved site / Ribosomal protein S18 signature. / L28p-like / Ribosomal protein L20 / Ribosomal protein L20 / Ribosomal protein L20, C-terminal / Ribosomal protein L27 / Ribosomal L27 protein / Ribosomal protein L21 / Ribosomal protein S15, bacterial-type / Ribosomal proteins 50S L24/mitochondrial 39S L24 / Ribosomal protein L17 / Ribosomal protein L17 superfamily / Ribosomal protein L17 / Ribosomal protein S6 / Ribosomal protein L21-like / L21-like superfamily / Ribosomal prokaryotic L21 protein / Ribosomal protein S6 / Ribosomal protein S6 superfamily / Ribosomal protein S12, bacterial-type / Ribosomal protein L24 / Ribosomal protein L34 / Ribosomal protein L34 / Ribosomal protein L13, bacterial-type / Translation elongation factor EF1B/ribosomal protein S6 / Ribosomal protein L3, bacterial/organelle-type / Ribosomal protein L15, bacterial-type / Ribosomal protein S18 / Ribosomal protein S18 / 50S ribosomal protein uL4 / Ribosomal protein S18 superfamily / K Homology domain / K homology RNA-binding domain / Ribosomal protein S3, conserved site / Ribosomal protein S3 signature. / Ribosomal protein S14, conserved site / Ribosomal protein S14 signature. / Ribosomal protein L5, conserved site / Ribosomal protein L5 signature. / KH domain / Type-2 KH domain profile. / K Homology domain, type 2 / Ribosomal protein S3, C-terminal Similarity search - Domain/homology Large ribosomal subunit protein bL17 / Large ribosomal subunit protein uL15 / Large ribosomal subunit protein bL36 / Small ribosomal subunit protein uS14 / Small ribosomal subunit protein uS11 / Large ribosomal subunit protein bL27 / Large ribosomal subunit protein bL28 / Small ribosomal subunit protein uS3 / Large ribosomal subunit protein uL14 / Small ribosomal subunit protein bS18 ...Large ribosomal subunit protein bL17 / Large ribosomal subunit protein uL15 / Large ribosomal subunit protein bL36 / Small ribosomal subunit protein uS14 / Small ribosomal subunit protein uS11 / Large ribosomal subunit protein bL27 / Large ribosomal subunit protein bL28 / Small ribosomal subunit protein uS3 / Large ribosomal subunit protein uL14 / Small ribosomal subunit protein bS18 / Small ribosomal subunit protein uS19 / Large ribosomal subunit protein bL33 / Large ribosomal subunit protein uL16 / Small ribosomal subunit protein uS7 / Small ribosomal subunit protein uS17 / Large ribosomal subunit protein bL20 / Large ribosomal subunit protein uL29 / Small ribosomal subunit protein uS9 / : / : / : / : / : / : / : / Large ribosomal subunit protein bL21 / Small ribosomal subunit protein bS6 / Large ribosomal subunit protein bL34 / Large ribosomal subunit protein uL4 / Large ribosomal subunit protein uL24 / Large ribosomal subunit protein bL31B / Large ribosomal subunit protein uL23 / Large ribosomal subunit protein uL5 / Small ribosomal subunit protein uS5 / Large ribosomal subunit protein uL13 / Small ribosomal subunit protein uS4 / Small ribosomal subunit protein uS12 / Large ribosomal subunit protein uL3 / Large ribosomal subunit protein uL6 / Small ribosomal subunit protein uS15 / Small ribosomal subunit protein uS8 / Small ribosomal subunit protein uS13 / Large ribosomal subunit protein uL30 / Small ribosomal subunit protein bS20 Similarity search - Component | |||||||||||||||
Biological species | Staphylococcus aureus (bacteria) | |||||||||||||||
Method | single particle reconstruction / cryo EM / Resolution: 3.11 Å | |||||||||||||||
Authors | Cimicata G / Bashan A / Yonath A | |||||||||||||||
Funding support | 1 items
| |||||||||||||||
Citation | Journal: To Be Published Title: Staphylococcus aureus 70S after 30 minutes incubation a 37C Authors: Cimicata G / Bashan A / Yonath A | |||||||||||||||
History |
|
-Structure visualization
Movie |
Movie viewer |
---|---|
Structure viewer | EM map: SurfViewMolmilJmol/JSmol |
Supplemental images |
-Downloads & links
-EMDB archive
Map data | emd_11902.map.gz | 224.5 MB | EMDB map data format | |
---|---|---|---|---|
Header (meta data) | emd-11902-v30.xml emd-11902.xml | 70.5 KB 70.5 KB | Display Display | EMDB header |
Images | emd_11902.png | 51 KB | ||
Filedesc metadata | emd-11902.cif.gz | 27.7 KB | ||
Others | emd_11902_additional_1.map.gz | 264.9 MB | ||
Archive directory | http://ftp.pdbj.org/pub/emdb/structures/EMD-11902 ftp://ftp.pdbj.org/pub/emdb/structures/EMD-11902 | HTTPS FTP |
-Validation report
Summary document | emd_11902_validation.pdf.gz | 552 KB | Display | EMDB validaton report |
---|---|---|---|---|
Full document | emd_11902_full_validation.pdf.gz | 551.6 KB | Display | |
Data in XML | emd_11902_validation.xml.gz | 7.3 KB | Display | |
Data in CIF | emd_11902_validation.cif.gz | 8.3 KB | Display | |
Arichive directory | https://ftp.pdbj.org/pub/emdb/validation_reports/EMD-11902 ftp://ftp.pdbj.org/pub/emdb/validation_reports/EMD-11902 | HTTPS FTP |
-Related structure data
Related structure data | 7asoMC 7asmC 7asnC 7aspC M: atomic model generated by this map C: citing same article (ref.) |
---|---|
Similar structure data |
-Links
EMDB pages | EMDB (EBI/PDBe) / EMDataResource |
---|---|
Related items in Molecule of the Month |
-Map
File | Download / File: emd_11902.map.gz / Format: CCP4 / Size: 282.6 MB / Type: IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Projections & slices | Image control
Images are generated by Spider. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Voxel size | X=Y=Z: 0.86 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Density |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Symmetry | Space group: 1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Details | EMDB XML:
CCP4 map header:
|
-Supplemental data
-Additional map: #1
File | emd_11902_additional_1.map | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Projections & Slices |
| ||||||||||||
Density Histograms |
-Sample components
+Entire : 70S
Entire | Name: 70S |
---|---|
Components |
|
+Supramolecule #1: 70S
Supramolecule | Name: 70S / type: complex / ID: 1 / Parent: 0 / Macromolecule list: #1-#47 |
---|---|
Source (natural) | Organism: Staphylococcus aureus (bacteria) |
+Macromolecule #1: 5S
Macromolecule | Name: 5S / type: rna / ID: 1 / Number of copies: 1 |
---|---|
Source (natural) | Organism: Staphylococcus aureus (bacteria) |
Molecular weight | Theoretical: 36.692801 KDa |
Sequence | String: UCUGGUGACU AUAGCAAGGA GGUCACACCU GUUCCCAUGC CGAACACAGA AGUUAAGGUC UUUAGCGACG AUGGUAGCCA ACUUACGUU CCGCUAGAGU AGAACGUUGC CAGGC |
+Macromolecule #20: 16S
Macromolecule | Name: 16S / type: rna / ID: 20 Details: ...Details: UUUAUGGAGAGUUUGAUCCUGGCUCAGGAUGAACGCUGGCGGCGUGCCUAAUACAUGCAAGUCGAGCGAACGGACGAGAAGCUUGCUUCUCUGAUGUUAGCGGCGGACGGGUGAGUAACACGUGGAUAACCUACCUAUAAGACUGGGAUAACUUCGGGAAACCGGAGCUAAUACCGGAUAAUAUUUUGAACCGCAUGGUUCAAAAGUGAAAGACGGUCUUGCUGUCACUUAUAGAUGGAUCCGCGCUGCAUUAGCUAGUUGGUAAGGUAACGGCUUACCAAGGCAACGAUACGUAGCCGACCUGAGAGGGUGAUCGGCCACACUGGAACUGAGACACGGUCCAGACUCCUACGGGAGGCAGCAGUAGGGAAUCUUCCGCAAUGGGCGAAAGCCUGACGGAGCAACGCCGCGUGAGUGAUGAAGGUCUUCGGAUCGUAAAACUCUGUUAUUAGGGAAGAACAUAUGUGUAAGUAACUGUGCACAUCUUGACGGUACCUAAUCAGAAAGCCACGGCUAACUACGUGCCAGCAGCCGCGGUAAUACGUAGGUGGCAAGCGUUAUCCGGAAUUAUUGGGCGUAAAGCGCGCGUAGGCGGUUUUUUAAGUCUGAUGUGAAAGCCCACGGCUCAACCGUGGAGGGUCAUUGGAAACUGGAAAACUUGAGUGCAGAAGAGGAAAGUGGAAUUCCAUGUGUAGCGGUGAAAUGCGCAGAGAUAUGGAGGAACACCAGUGGCGAAGGCGACUUUCUGGUCUGUAACUGACGCUGAUGUGCGAAAGCGUGGGGAUCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGAGUGCUAAGUGUUAGGGGGUUUCCGCCCCUUAGUGCUGCAGCUAACGCAUUAAGCACUCCGCCUGGGGAGUACGACCGCAAGGUUGAAACUCAAAGGAAUUGACGGGGACCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGAAGAACCUUACCAAAUCUUGACAUCCUUUGACAACUCUAGAGAUAGAGCCUUCCCCUUCGGGGGACAAAGUGACAGGUGGUGCAUGGUUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUAAGCUUAGUUGCCAUCAUUAAGUUGGGCACUCUAAGUUGACUGCCGGUGACAAACCGGAGGAAGGUGGGGAUGACGUCAAAUCAUCAUGCCCCUUAUGAUUUGGGCUACACACGUGCUACAAUGGACAAUACAAAGGGCAGCGAAACCGCGAGGUCAAGCAAAUCCCAUAAAGUUGUUCUCAGUUCGGAUUGUAGUCUGCAACUCGACUACAUGAAGCUGGAAUCGCUAGUAAUCGUAGAUCAGCAUGCUACGGUGAAUACGUUCCCGGGUAUUGUACACACCGCCCGUCACACCACGAGAGUUUGUAACACCCGAAGCCGGUGGAGUAACCUUUUAGGAGCUAGCCGUCGAAGGUGGGACAAAUGAUUGGGGUGAAGUCGUAACAAGGUAGCCGUAUCGGAAGGUGCGGCUGGAUCACCUCCUUU Number of copies: 1 |
---|---|
Source (natural) | Organism: Staphylococcus aureus (bacteria) |
Molecular weight | Theoretical: 458.188688 KDa |
Sequence | String: AUGGAGAGUU UGAUCCUGGC UCAGGAUGAA CGCUGGCGGC GUGCCUAAUA CAUGCAAGUC GAGCGAACGU UAGCGGCGGA CGGGUGAGU AACACGUGGA UAACCUACCU AUAAGACUGG GAUAACUUCG GGAAACCGUA GCUAAUACCG GAUAAUAUAG U GAAAGACA ...String: AUGGAGAGUU UGAUCCUGGC UCAGGAUGAA CGCUGGCGGC GUGCCUAAUA CAUGCAAGUC GAGCGAACGU UAGCGGCGGA CGGGUGAGU AACACGUGGA UAACCUACCU AUAAGACUGG GAUAACUUCG GGAAACCGUA GCUAAUACCG GAUAAUAUAG U GAAAGACA CUUAUAGAUG GAUCCGCGCU GCAUUAGCUA GUUGGUAAGG UAACGGCUUA CCAAGGCAAC GAUGCAUAGC CG ACCUGAG AGGGUGAUCG GCCACACUGG AACUGAGACA CGGUCCAGAC UCCUACGGGA GGCAGCAGUA GGGAAUCUUC CGC AAUGGG CGAAAGCCUG ACGGAGCAAC GCCGCGUGAG UGAUGAAGGU CUAUCGUAAA ACUCUGUUAU UAGGGAGAAC AUAU GUCAC AUCUUGACGU ACCUAAUCAG AAAGCCACGG CUAACUACGU GCCAGCAGCC GCGGUAAUAC GUAGGUGGCA AGCGU UAUC CGGAAUUAUU GGGCGUAAAG CGCGCGUAGG CGGUUUUUUA AGUCUGAUGU GAAAGCCCAC GGCUCAACCG UGGAGG GUC AUUGGAAACU GGAAAACUUG AGUGCAGAAG AGGAAAGUGG AAUUCCAUGU GUAGCGGUGA AAUGCGCGAG AUAUGGA GG AACACCAGUG GCGAAGGCGA CUUUCUGGUC UGUAACUGAC GCUGAUGUGC GAAAGCGUGG GGAUCAAACA GGAUUAGA U ACCCUGGUAG UCCACGCCGU AAACGAUGAG UGCUAAGUGU UAGGGGGUGC CCCUUAGUGC UGCAGCUAAC GCAUUAAGC ACUCCGCCUG GGGAGUACGA CCGCAAGGUU GAAACUCAAA GGAAUUGACG GGGACCCGCA CAAGCGGUGG AGCAUGUGGU UUAAUUCGA AGCAACGCGA AGAACCUUAC CAAAUCUUGA CAUCACAAAG UGACAGGUGG UGCAUGGUUG UCGUCAGCUC G UGUCGUGA GAUGUUGGGU UAAGUCCCGC AACGAGCGCA ACCCUUAAGC UUAGUUGCCA UCAUUAAGUU GGGCACUCUA AG UUGACUG CCGGUGACAA ACCGGAGGAA GGUGGGGAUG ACGUCAAAUC AUCAUGCCCC UUAUGAUUUG GGCUACACAC GUG CUACAA UGGACAAUAC AAAGGGCAGC GAAACCGCGA GGUCAAGCAA UCCCAUAAAG UUGUUCUCAG UUCGGAUUGU AGUC UGCAA CUCGACUACA UGAAGCUGGA AUCGCUAGUA AUCGUAGAUC AGCAUGCUAC GGUGAAUACG UUCCCGGGUC UUGUA CACA CCGCCCGUCA CACCACGAGG UUUGUAACAC CCGAAGCCGG UGGAGUAACC UUUUAGGAGC UAGCCGUCGA AGGUGG GAC AAAUGGGGGU GAAGUCGUAA CAAGGUAGCC GUAUCGGAAG GUGCGGCUGG AU |
+Macromolecule #47: 23S
Macromolecule | Name: 23S / type: rna / ID: 47 Details: GAUUAAGUUAUUAAGGGCGCACGGUGGAUGCCUUGGCACUAGAAGCCGAUGAAGGACGUUACUAACGACGAUAUGCUUUGGGGAGCUGUAAGCUUUGAUCCAGAGAUUUCCGAAUGGGGAAACCCAGCAUGAGUUA ...Details: GAUUAAGUUAUUAAGGGCGCACGGUGGAUGCCUUGGCACUAGAAGCCGAUGAAGGACGUUACUAACGACGAUAUGCUUUGGGGAGCUGUAAGCUUUGAUCCAGAGAUUUCCGAAUGGGGAAACCCAGCAUGAGUUA UGUCAUGUUAUCGAUAUGUGAAUACAUAGCAUAUCAGAAGGCACACCCGGAGAACUGAAACAUCUUAGUA CCCGGAGGAAGAGAAAGAAAAUUCGAUUCCCUUAGUAGCGGCGAGCGAAACGGGAAGAGCCCAAACCAAC AAGCUUGCUUGUUGGGGUUGUAGGACACUCUGUACGGAGUUACAAAGGACGACAUUAGACGAAUCAUCUG GAAAGAUGAAUCAAAGAAGGUAAUAAUCCUGUAGUCGAAAAUGUUGUCUCUCUUGAGUGGAUCCUGAGUA CGACGGAGCACGUGAAAUUCCGUCGGAAUCUGGGAGGACCAUCUCCUAAGGCUAAAUACUCUCUAGUGAC CGAUAGUGAACCAGUACCGUGAGGGAAAGGUGAAAAGCACCCCGGAAGGGGAGUGAAAUAGAACCUGAAA CCGUGUGCUUACAAGUAGUCAGAGCCCGUUAAUGGGUGAUGGCGUGCCUUUUGUAGAAUGAACCGGCGAG UUACGAUUUGAUGCAAGGUUAAGCAGUAAAUGUGGAGCCGUAGCGAAAGCGAGUCUGAAUAGGGCGUUUA GUAUUUGGUCGUAGACCCGAAACCAGGUGAUCUACCCUUGGUCAGGUUGAAGUUCAGGUAACACUGAAUG GAGGACCGAACCGACUUACGUUGAAAAGUGAGCGGAUGAACUGAGGGUAGCGGAGAAAUUCCAAUCGAAC CUGGAGAUAGCUGGUUCUCUCCGAAAUAGCUUUAGGGCUAGCCUCAAGUGAUGAUUAUUGGAGGUAGAGC ACUGUUUGGACGAGGGGCCCCUCUCGGGUUACCGAAUUCAGACAAACUCCGAAUGCCAAUUAAUUUAACU UGGGAGUCAGAACAUGGGUGAUAAGGUCCGUGUUCGAAAGGGAAACAGCCCAGACCACCAGCUAAGGUCC CAAAAUAUAUGUUAAGUGGAAAAGGAUGUGGCGUUGCCCAGACAACUAGGAUGUUGGCUUAGAAGCAGCC AUCAUUUAAAGAGUGCGUAAUAGCUCACUAGUCGAGUGACACUGCGCCGAAAAUGUACCGGGGCUAAACA UAUUACCGAAGCUGUGGAUUGUCCUUUGGACAAUGGUAGGAGAGCGUUCUAAGGGCGUUGAAGCAUGAUC GUAAGGACAUGUGGAGCGCUUAGAAGUGAGAAUGCCGGUGUGAGUAGCGAAAGACGGGUGAGAAUCCCGU CCACCGAUUGACUAAGGUUUCCAGAGGAAGGCUCGUCCGCUCUGGGUUAGUCGGGUCCUAAGCUGAGGCC GACAGGCGUAGGCGAUGGAUAACAGGUUGAUAUUCCUGUACCACCUAUAAUCGUUUUAAUCGAUGGGGGG ACGCAGUAGGAUAGGCGAAGCGUGCGAUUGGAUUGCACGUCUAAGCAGUAAGGCUGAGUAUUAGGCAAAU CCGGUACUCGUUAAGGCUGAGCUGUGAUGGGGAGAAGACAUUGAGUCUUCGAGUCGUUGAUUUCACACUG CCGAGAAAAGCCUCUAGAUAGAAAAUAGGUGCCCGUACCGCAAACCGACACAGGUAGUCAAGAUGAGAAU UCUAAGGUGAGCGAGCGAACUCUCGUUAAGGAACUCGGCAAAAUGACCCCGGUAACUUCGGGAGAAGGGGU GCUCUUUAGGGUUAACGCCCAGAAGAGCCGCAGUGAAUAGGCCCAAGCGACUGUUUAUCAAAAACACAGG UCUCUGCUAAACCGUAAGGUGAUGUAUAGGGGCUGACGCCUGCCCGGUGCUGGAAGGUUAAGAGGAGUGG UUAGCUUCUGCGAAGCUACGAAUCGAAGCCCCAGUAAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAG CGAAAUUCCUUGUCGGGUAAGUUCCGACCCGCACGAAAGGCGUAACGAUUUGGGCACUGUCUCAACGAGA GACUCGGUGAAAUCAUAGUACCUGUGAAGAUGCAGGUUACCCGCGACAGGACGGAAAGACCCCGUGGAGC UUUACUGUAGCCUGAUAUUGAAAUUCGGCACAGCUUGUACAGGAUAGGUAGGAGCCUUUGAAACGUGAGC GCUAGCUUACGUGGAGGCGCUGGUGGGAUACUACCCUAGCUGUGUUGGCUUUCUAACCCGCACCACUUAU CGUGGUGGGAGACAGUGUCAAGCGGGCAGUUUGACUGGGGCGGUCGCCUCCUAAAAGGUAACGGAGGCGC UCAAAGGUUCCCUCAGAAUGGUUGGAAAUCAUUCAUAGAGUGUAAAGGCAUAAGGGAGCUUGACUGCGAG ACCUACAAGUCGAGCAGGGUCGAAAGACGGACUUAGUGAUCCGGUGGUUCCGCAUGGAAGGGCCAUCGCU CAACGGAUAAAAGCUACCCCGGGGAUAACAGGCUUAUCUCCCCCAAGAGUUCACAUCGACGGGGAGGUUU GGCACCUCGAUGUCGGCUCAUCGCAUCCUGGGGCUGUAGUCGGUCCCAAGGGUUGGGCUGUUCGCCCAUU AAAGCGGUACGCGAGCUGGGUUCAGAACGUCGUGAGACAGUUCGGUCCCUAUCCGUCGUGGGCGUAGGAA AUUUGAGAGGAGCUGUCCUUAGUACGAGAGGACCGGGAUGGACAUACCUCUGGUGUACCAGUUGUCGUGC CAACGGCAUAGCUGGGUAGCUAUGUGUGGACGGGAUAAGUGCUGAAAGCAUCUAAGCAUGAAGCCCCCCU CAAGAUGAGAUUUCCCAACUUCGGUUAUAAGAUCCCUCAAAGAUGAUGAGGUUAAUAGGUUCGAGGUGGA AGCAUGGUGACAUGUGGAGCUGACGAAUACUAAUCGAUCGAAGACUUAAUCAA Number of copies: 1 |
---|---|
Source (natural) | Organism: Staphylococcus aureus (bacteria) |
Molecular weight | Theoretical: 881.281938 KDa |
Sequence | String: UUAAGUUAUU AAGGGCGCAC GGUGGAUGCC UUGGCACUAG AAGCCAAUGA AGGACGUUAC UAACGACGAU AUGCUUUGGG GAGCUGUAA GUAAGCUUUG AUCCAGAGAU UUCCGAAUGG GGAAACCCAG CAUGAGUUAU GUCAUGUUAU CGAUAUGUGA A UACAUAGC ...String: UUAAGUUAUU AAGGGCGCAC GGUGGAUGCC UUGGCACUAG AAGCCAAUGA AGGACGUUAC UAACGACGAU AUGCUUUGGG GAGCUGUAA GUAAGCUUUG AUCCAGAGAU UUCCGAAUGG GGAAACCCAG CAUGAGUUAU GUCAUGUUAU CGAUAUGUGA A UACAUAGC AUAUCAGAAG GCACACCCGG AGAACUGAAA CAUCUUAGUA CCCGGAGGAA GAGAAAGAAA AUUCGAUUCC CU UAGUAGC GGCGAGCGAA ACGGGAAGAG CCCAAACCAA CAAGCUUGCU UGUUGGGGUU GUAGGACACU CUAGAGUUAC AAA GGACGA CAUUAGACGA AUCAUCUGGA AAGAUGAAUC AAAGAAGGUA AUAAUCCUGU AGUCGAAAAU GUUGUCUCUC UUGA GUGGA UCCUGAGUAC GACGGAGCAC GUGAAAUUCC GUCGGAAUCU GGGAGGACCA UCUCCUAAGG CUAAAUACUC UCUAG UGAC CGAUAGUGAA CCAGUACCGU GAGGGAAAGG UGAAAAGCAC CCCGGAAGGG GAGUGAAAUA GAACCUGAAA CCGUGU GCU UACAAGUAGU CAGAGCCCGU UAAUGGGUGA UGGCGUGCCU UUUGUAGAAU GAACCGGCGA GUUACGAUUU GAUGCAA GG UUAAGCAGUA AAUGUGGAGC CGUAGCGAAA GCGAGUCUGA AUAGGGCGUU UAGUAUUUGG UCGUAGACCC GAAACCAG G UGAUCUACCC UUGGUCAGGU UGAAGUUCAG UGAAUGGAGG ACCGAACCGA CUUACGUUGA AAAGUGAGCG GAUGAACUG AGGGUAGCGG AGAAAUUCCA AUCGAACCUG GAGAUAGCUG GUUCUCUCCG AAAUAGCUUU AGGGCUAGCC UCAAGUGAUG AUUAUUGGA GGUAGAGCAC UGUUUGGACG AGGCCGAAUU CAGACAAACU CCGAAUGCCA AUUAAUUUAA CUUGGGAGUC A GAACAUGG GUGAUAAGGU CCGUGUUCGA AAGGGAAACA GCCCAGACCA CCAGCUAAGG UCCCAAAAUA UAUGUUAAGU GG AAAAGGA UGUGGCGUUG CCACAACUAG AGUCGAGUGA CACUGCGCCG AAAAUGUACC GGGGCUAAAC AUAUUACCGA AGC UGUGGA UUGUCCUUGG ACAAUGGUAG GAGAGCGUUC UAAGGGCGUU GAAGCAUGAU CGUAAGGACA UGUGGAGCGC UUAG AAGUG AGAAUGCCGG UGUGAGUAGC GAAAGACGGG UGAGAAUCCC GUCCACCGAU UGACUAAGGU UUCCAGAGGA AGGCU CGUC CGCUCUGGGU UAGUCGGGUC CUAAGCUGAG GCCGACAGGC GUAGGCGAUG GAUAACAGGU UGAUAUUCCU GUACCA CCU AUAAUCGAUG GGGGGACGCA GUAGGAUAGG GAAGCGUUGG AUUGCACGUC UAAGCAGUAA GGCUGAGUAA UCCGGUA CU CGGGCUGAGC UGUGAUGGGG AGAAGACCGA GUCGUUGAUU UCACACUGCC GAGAAAAGCC UCUAGAUAGA AAAUAGGU G CCCGUACCGC AAACCGACAC AGGUAGUCAA GAUGAGAAUU CUAAGGUGAG CGAGCGAACU CUCGUUAAGG AACUCGGCA AAAUGACCCC GUAACUUCGG GAGAAGGGGU GCUCUUUAGG GUUAACGCCC AGAAGAGCCG CAGUGAAUAG GCCCAAGCGA CUGUUUAUC AAAAACACAG GUCUCUGCUA AACCGUAAGG UGAUGUAUAG GGGCUGACGC CUGCCCGGUG CUGGAAGGUU A AGAGGAGU GGUUAGCUUC UGCGAAGCUA CGAAUCGAAG CCCCAGUAAA CGGCGGCCGU AACGGUCCUA AGGUAGCGAA AU UCCUUGU CGGGUAAGUU CCGACCCGCA CGAAAGGCGU AACGAUUUGG GCACUGUCUC AACGAGAGAC UCGGUGAAAU CAU AGUACC UGUGAAGAUG CAGGUUACCC GCGACAGGAC GGAAAGACCC CGUGGAGCUU UACUGUAGCC UGAUAUUGAA AUUC GGCAC AGCUAGCUGU GUUGGCUUUC UAACCCGCAC CACUUACGUG GUGGGAGACA GUGUCAAGCG GGCAGUUUGA CUGGG GCGG UCGCCUCCUA AAAGGUAACG GAGGCGCUCA AAGGUUCCCU CAGAAUGGUU GGAAAUCAUU CAUAGAGUGU AAAGGC AUA AGGGAGCUUG ACUGCGAGAC CUACAAGUCG AGCAGGGUCG AAAGACGGAC UUAGUGAUCC GGUGGUUCCG CAUGGAA GG GCCAUCGCUC AACGGAUAAA AGCUACCCCG GGGAUAACAG GCUUAUCUCC CCCAAGAGUU CACAUCGACG GGGAGGUU U GGCACCUCGA UGUCGGCUCA UCGCAUCCUG GGGCUGUAGU CGGUCCCAAG GGUUGGGCUG UUCGCCCAUU AAAGCGGUA CGCGAGCUGG GUUCAGAACG UCGUGAGACA GUUCGGUCCC UAUCCGUCGU GGGCGUAGGA AAUUUGAGAG GAGCUGUCCU UAGUACGAG AGGACCGGGA UGGACAUACC UCUGGUGUAC CAGUUGUCGU GCCAACGGCA UAGCUGGGUA GCUAUGUGUG G ACGGGAUA AGUGCUGAAA GCAUCUAAGC AUGAAGCCCC CCUCAAGAUG AGAUUUCCCA ACUCGGUUAU AAGAUCCCUC AA AGAUGAU GAGGUUAAUA GGUUCGAGGU GGAAGCAUGG UGACAUGUGG AGCUGACGAA UACUAAUCGA UCGAAGACUU AAU |
+Macromolecule #2: 30S ribosomal protein S3
Macromolecule | Name: 30S ribosomal protein S3 / type: protein_or_peptide / ID: 2 / Number of copies: 1 / Enantiomer: LEVO |
---|---|
Source (natural) | Organism: Staphylococcus aureus (bacteria) |
Molecular weight | Theoretical: 22.684201 KDa |
Recombinant expression | Organism: Staphylococcus aureus (bacteria) |
Sequence | String: GQKINPIGLR VGIIRDWEAK WYAEKDFASL LHEDLKIRKF IDNELKEASV SHVEIERAAN RINIAIHTGK PGMVIGKGGS EIEKLRNKL NALTDKKVHI NVIEIKKVDL DARLVAENIA RQLENRASFR RVQKQAITRA MKLGAKGIKT QVSGRLGGAD I ARAEQYSE ...String: GQKINPIGLR VGIIRDWEAK WYAEKDFASL LHEDLKIRKF IDNELKEASV SHVEIERAAN RINIAIHTGK PGMVIGKGGS EIEKLRNKL NALTDKKVHI NVIEIKKVDL DARLVAENIA RQLENRASFR RVQKQAITRA MKLGAKGIKT QVSGRLGGAD I ARAEQYSE GTVPLHTLRA DIDYAHAEAD TTYGKLGVKV WIYR UniProtKB: Small ribosomal subunit protein uS3 |
+Macromolecule #3: 30S ribosomal protein S4
Macromolecule | Name: 30S ribosomal protein S4 / type: protein_or_peptide / ID: 3 / Number of copies: 1 / Enantiomer: LEVO |
---|---|
Source (natural) | Organism: Staphylococcus aureus (bacteria) |
Molecular weight | Theoretical: 22.849145 KDa |
Recombinant expression | Organism: Staphylococcus aureus (bacteria) |
Sequence | String: RFRGSNWKKS RRLGISLSGT GKELEKRPYA PGQHGPNQRK KLSEYGLQLR EKQKLRYLYG MTERQFRNTF DIAGKKFGVH GENFMILLA SRLDAVVYSL GLARTRRQAR QLVNHGHILV DGKRVDIPSY SVKPGQTISV REKSQKLNII VESVEINNFV P EYLNFDAD ...String: RFRGSNWKKS RRLGISLSGT GKELEKRPYA PGQHGPNQRK KLSEYGLQLR EKQKLRYLYG MTERQFRNTF DIAGKKFGVH GENFMILLA SRLDAVVYSL GLARTRRQAR QLVNHGHILV DGKRVDIPSY SVKPGQTISV REKSQKLNII VESVEINNFV P EYLNFDAD SLTGTFVRLP ERSELPAEIN EQLIVEYYSR UniProtKB: Small ribosomal subunit protein uS4 |
+Macromolecule #4: 30S ribosomal protein S5
Macromolecule | Name: 30S ribosomal protein S5 / type: protein_or_peptide / ID: 4 / Number of copies: 1 / Enantiomer: LEVO |
---|---|
Source (natural) | Organism: Staphylococcus aureus (bacteria) |
Molecular weight | Theoretical: 16.522119 KDa |
Recombinant expression | Organism: Staphylococcus aureus (bacteria) |
Sequence | String: EFEERVVTIN RVAKVVKGGR RFRFTALVVV GDKNGRVGFG TGKAQEVPEA IKKAVEAAKK DLVVVPRVEG TTPHTITGRY GSGSVFMKP AAPGTGVIAG GPVRAVLELA GITDILSKSL GSNTPINMVR ATIDGLQNLK NAEDVAKLRG KTVEELY UniProtKB: Small ribosomal subunit protein uS5 |
+Macromolecule #5: 30S ribosomal protein S6
Macromolecule | Name: 30S ribosomal protein S6 / type: protein_or_peptide / ID: 5 / Number of copies: 1 / Enantiomer: LEVO |
---|---|
Source (natural) | Organism: Staphylococcus aureus (bacteria) |
Molecular weight | Theoretical: 11.239766 KDa |
Recombinant expression | Organism: Staphylococcus aureus (bacteria) |
Sequence | String: MRTYEVMYIV RPNIEEDAKK ALVERFNGIL ATEGAEVLEA KDWGKRRLAY EINDFKDGFY NIVRVKSDNN KATDEFQRLA KISDDIIRY MVIRED UniProtKB: Small ribosomal subunit protein bS6 |
+Macromolecule #6: 30S ribosomal protein S7
Macromolecule | Name: 30S ribosomal protein S7 / type: protein_or_peptide / ID: 6 / Number of copies: 1 / Enantiomer: LEVO |
---|---|
Source (natural) | Organism: Staphylococcus aureus (bacteria) |
Molecular weight | Theoretical: 17.695357 KDa |
Recombinant expression | Organism: Staphylococcus aureus (bacteria) |
Sequence | String: PRKGSVPKRD VLPDPIHNSK LVTKLINKIM LDGKRGTAQR ILYSAFDLVE QRSGRDALEV FEEAINNIMP VLEVKARRVG GSNYQVPVE VRPERRTTLG LRWLVNYARL RGEKTMEDRL ANEILDAANN TGGAVKKRED THKMAEANKA FAHYRW UniProtKB: Small ribosomal subunit protein uS7 |
+Macromolecule #7: 30S ribosomal protein S8
Macromolecule | Name: 30S ribosomal protein S8 / type: protein_or_peptide / ID: 7 / Number of copies: 1 / Enantiomer: LEVO |
---|---|
Source (natural) | Organism: Staphylococcus aureus (bacteria) |
Molecular weight | Theoretical: 14.622014 KDa |
Recombinant expression | Organism: Staphylococcus aureus (bacteria) |
Sequence | String: MTDPIADMLT RVRNANMVRH EKLELPASNI KKEIAEILKS EGFIKNVEYV EDDKQGVLRL FLKYGQNDER VITGLKRISK PGLRVYAKA SEMPKVLNGL GIALVSTSEG VITDKEARKR NVGGEIIAYV W UniProtKB: Small ribosomal subunit protein uS8 |
+Macromolecule #8: 30S ribosomal protein S9
Macromolecule | Name: 30S ribosomal protein S9 / type: protein_or_peptide / ID: 8 / Number of copies: 1 / Enantiomer: LEVO |
---|---|
Source (natural) | Organism: Staphylococcus aureus (bacteria) |
Molecular weight | Theoretical: 14.312321 KDa |
Recombinant expression | Organism: Staphylococcus aureus (bacteria) |
Sequence | String: VEYRGTGRRK NSVARVRLVP GEGNITVNNR DVREYLPFES LILDLNQPFD VTETKGNYDV LVNVHGGGFT GQAQAIRHGI ARALLEADP EYRGSLKRAG LLTRDPRMKE RKKPGLKAAR RSPQFSKR UniProtKB: Small ribosomal subunit protein uS9 |
+Macromolecule #9: 30S ribosomal protein S10
Macromolecule | Name: 30S ribosomal protein S10 / type: protein_or_peptide / ID: 9 / Number of copies: 1 / Enantiomer: LEVO |
---|---|
Source (natural) | Organism: Staphylococcus aureus (bacteria) |
Molecular weight | Theoretical: 9.24361 KDa |
Recombinant expression | Organism: Staphylococcus aureus (bacteria) |
Sequence | String: IRIRLKAYDH RVIDQSAEKI VETAKRSGAD VSGPIPLPTE KSVYTIIRAV HKYKDSREQF EQRTHKRLID IVNPTPKTVD UniProtKB: UNIPROTKB: A0A6H0HKY4 |
+Macromolecule #10: 30S ribosomal protein S11
Macromolecule | Name: 30S ribosomal protein S11 / type: protein_or_peptide / ID: 10 / Number of copies: 1 / Enantiomer: LEVO |
---|---|
Source (natural) | Organism: Staphylococcus aureus (bacteria) |
Molecular weight | Theoretical: 12.047609 KDa |
Recombinant expression | Organism: Staphylococcus aureus (bacteria) |
Sequence | String: NIENGVAHIR STFNNTIVTI TDEFGNALSW SSAGALGFKG SKKSTPFAAQ MASETASKSA MEHGLKTVEV TVKGPGPGRE SAIRALQSA GLEVTAIRDV TPVPHNGCRP PKRRR UniProtKB: Small ribosomal subunit protein uS11 |
+Macromolecule #11: 30S ribosomal protein S12
Macromolecule | Name: 30S ribosomal protein S12 / type: protein_or_peptide / ID: 11 / Number of copies: 1 / Enantiomer: LEVO |
---|---|
Source (natural) | Organism: Staphylococcus aureus (bacteria) |
Molecular weight | Theoretical: 15.189673 KDa |
Recombinant expression | Organism: Staphylococcus aureus (bacteria) |
Sequence | String: PTINQLVRKP RQSKIKKSDS PALNKGFNSK KKKFTDLNSP QKRGVCTRVG TMTPKKPNSA LRKYARVRLS NNIEINAYIP GIGHNLQEH SVVLVRGGRV KDLPGVRYHI VRGALDTSGV DGRRQGRSLY GTKKPKN UniProtKB: Small ribosomal subunit protein uS12 |
+Macromolecule #12: 30S ribosomal protein S13
Macromolecule | Name: 30S ribosomal protein S13 / type: protein_or_peptide / ID: 12 / Number of copies: 1 / Enantiomer: LEVO |
---|---|
Source (natural) | Organism: Staphylococcus aureus (bacteria) |
Molecular weight | Theoretical: 12.843768 KDa |
Recombinant expression | Organism: Staphylococcus aureus (bacteria) |
Sequence | String: ARIAGVDIPR EKRVVISLTY IYGIGTSTAQ KILEEANVSA DTRVKDLTDD ELGRIREVVD GYKVEGDLRR ETNLNIKRLM EISSYRGIR HRRGLPVRGQ KTKNNARTRK GPVK UniProtKB: Small ribosomal subunit protein uS13 |
+Macromolecule #13: 30S ribosomal protein S14 type Z
Macromolecule | Name: 30S ribosomal protein S14 type Z / type: protein_or_peptide / ID: 13 / Number of copies: 1 / Enantiomer: LEVO |
---|---|
Source (natural) | Organism: Staphylococcus aureus (bacteria) |
Molecular weight | Theoretical: 7.186573 KDa |
Recombinant expression | Organism: Staphylococcus aureus (bacteria) |
Sequence | String: AKTSMVAKQQ KKQKYAVREY TRCERCGRPH SVYRKFKLCR ICFRELAYKG QIPGVRKASW UniProtKB: Small ribosomal subunit protein uS14 |
+Macromolecule #14: 30S ribosomal protein S15
Macromolecule | Name: 30S ribosomal protein S15 / type: protein_or_peptide / ID: 14 / Number of copies: 1 / Enantiomer: LEVO |
---|---|
Source (natural) | Organism: Staphylococcus aureus (bacteria) |
Molecular weight | Theoretical: 10.503135 KDa |
Recombinant expression | Organism: Staphylococcus aureus (bacteria) |
Sequence | String: AISQERKNEI IKEYRVHETD TGSPEVQIAV LTAEINAVNE HLRTHKKDHH SRRGLLKMVG RRRHLLNYLR SKDIQRYREL IKSLGIRR UniProtKB: Small ribosomal subunit protein uS15 |
+Macromolecule #15: 30S ribosomal protein S16
Macromolecule | Name: 30S ribosomal protein S16 / type: protein_or_peptide / ID: 15 / Number of copies: 1 / Enantiomer: LEVO |
---|---|
Source (natural) | Organism: Staphylococcus aureus (bacteria) |
Molecular weight | Theoretical: 9.291743 KDa |
Recombinant expression | Organism: Staphylococcus aureus (bacteria) |
Sequence | String: AVKIRLTRLG SKRNPFYRIV VADARSPRDG RIIEQIGTYN PTSANAPEIK VDEALALKWL NDGAKPTDTV HNILSKEGIM KKF UniProtKB: UNIPROTKB: A0A6K3WEJ9 |
+Macromolecule #16: 30S ribosomal protein S17
Macromolecule | Name: 30S ribosomal protein S17 / type: protein_or_peptide / ID: 16 / Number of copies: 1 / Enantiomer: LEVO |
---|---|
Source (natural) | Organism: Staphylococcus aureus (bacteria) |
Molecular weight | Theoretical: 9.36686 KDa |
Recombinant expression | Organism: Staphylococcus aureus (bacteria) |
Sequence | String: NDRKVYVGKV VSDKMDKTIT VLVETYKTHK LYGKRVKYSK KYKTHDENNS AKLGDIVKIQ ETRPLSATKR FRLVEIVEES UniProtKB: Small ribosomal subunit protein uS17 |
+Macromolecule #17: 30S ribosomal protein S18
Macromolecule | Name: 30S ribosomal protein S18 / type: protein_or_peptide / ID: 17 / Number of copies: 1 / Enantiomer: LEVO |
---|---|
Source (natural) | Organism: Staphylococcus aureus (bacteria) |
Molecular weight | Theoretical: 6.574833 KDa |
Recombinant expression | Organism: Staphylococcus aureus (bacteria) |
Sequence | String: GITHIDYKDT ELLKRFISER GKILPRRVTG TSAKYQRMLT TAIKRSRHMA LLPYVK UniProtKB: Small ribosomal subunit protein bS18 |
+Macromolecule #18: 30S ribosomal protein S19
Macromolecule | Name: 30S ribosomal protein S19 / type: protein_or_peptide / ID: 18 / Number of copies: 1 / Enantiomer: LEVO |
---|---|
Source (natural) | Organism: Staphylococcus aureus (bacteria) |
Molecular weight | Theoretical: 9.010406 KDa |
Recombinant expression | Organism: Staphylococcus aureus (bacteria) |
Sequence | String: SIKKGPFVDE HLMKKVEAQE GSEKKQVIKT WSRRSTIFPN FIGHTFAVYD GRKHVPVYVT EDMVGHKLGE FAPTRTFK UniProtKB: Small ribosomal subunit protein uS19 |
+Macromolecule #19: 30S ribosomal protein S20
Macromolecule | Name: 30S ribosomal protein S20 / type: protein_or_peptide / ID: 19 / Number of copies: 1 / Enantiomer: LEVO |
---|---|
Source (natural) | Organism: Staphylococcus aureus (bacteria) |
Molecular weight | Theoretical: 8.480758 KDa |
Recombinant expression | Organism: Staphylococcus aureus (bacteria) |
Sequence | String: KSAIKRVKTT EKAEARNISQ KSAMRTAVKN AKTAVSNNAD NKNELVSLAV KLVDKAAQSN LIHSNKADRI KSQLMTAN UniProtKB: Small ribosomal subunit protein bS20 |
+Macromolecule #21: 50S ribosomal protein L3
Macromolecule | Name: 50S ribosomal protein L3 / type: protein_or_peptide / ID: 21 / Number of copies: 1 / Enantiomer: LEVO |
---|---|
Source (natural) | Organism: Staphylococcus aureus (bacteria) |
Molecular weight | Theoretical: 23.199545 KDa |
Recombinant expression | Organism: Staphylococcus aureus (bacteria) |
Sequence | String: TKGILGRKIG MTQVFGENGE LIPVTVVEAK ENVVLQKKTV EVDGYNAIQV GFEDKKAYKK DAKSNKYANK PAEGHAKKAD AAPKRFIRE FRNVDVDAYE VGQEVSVDTF VAGDVIDVTG VSKGKGFQGA IKRHGQSRGP MSHGSHFHRA PGSVGMASDA S RVFKGQKM ...String: TKGILGRKIG MTQVFGENGE LIPVTVVEAK ENVVLQKKTV EVDGYNAIQV GFEDKKAYKK DAKSNKYANK PAEGHAKKAD AAPKRFIRE FRNVDVDAYE VGQEVSVDTF VAGDVIDVTG VSKGKGFQGA IKRHGQSRGP MSHGSHFHRA PGSVGMASDA S RVFKGQKM PGRMGGNTVT VQNLEVVQVD TENKVILVKG NVPGPKKGLV EIRTSIK UniProtKB: Large ribosomal subunit protein uL3 |
+Macromolecule #22: 50S ribosomal protein L4
Macromolecule | Name: 50S ribosomal protein L4 / type: protein_or_peptide / ID: 22 / Number of copies: 1 / Enantiomer: LEVO |
---|---|
Source (natural) | Organism: Staphylococcus aureus (bacteria) |
Molecular weight | Theoretical: 22.293424 KDa |
Recombinant expression | Organism: Staphylococcus aureus (bacteria) |
Sequence | String: NYDVLKLDGT KSGSIELSDA VFGIEPNNSV LFEAINLQRA SLRQGTHAVK NRSAVSGGGR KPWKQKGTGR ARQGTIRAPQ WRGGGIVFG PTPRSYAYKM PKKMRRLALR SALSFKAQEN GLTVVDAFNF EAPKTKEFKN VLSTLEQPKK VLVVTENEDV N VELSARNI ...String: NYDVLKLDGT KSGSIELSDA VFGIEPNNSV LFEAINLQRA SLRQGTHAVK NRSAVSGGGR KPWKQKGTGR ARQGTIRAPQ WRGGGIVFG PTPRSYAYKM PKKMRRLALR SALSFKAQEN GLTVVDAFNF EAPKTKEFKN VLSTLEQPKK VLVVTENEDV N VELSARNI PGVQVTTAQG LNVLDITNAD SLVITEAAAK KVEEVLG UniProtKB: Large ribosomal subunit protein uL4 |
+Macromolecule #23: 50S ribosomal protein L5
Macromolecule | Name: 50S ribosomal protein L5 / type: protein_or_peptide / ID: 23 / Number of copies: 1 / Enantiomer: LEVO |
---|---|
Source (natural) | Organism: Staphylococcus aureus (bacteria) |
Molecular weight | Theoretical: 18.644643 KDa |
Recombinant expression | Organism: Staphylococcus aureus (bacteria) |
Sequence | String: RLKEKFNTEV TENLMKKFNY SSVMEVPKID KIVVNMGVGD AVQNSKVLDN AVEELELITG QKPLVTKAKK SIATFRLREG MPIGAKVTL RGERMYEFLD KLISVSLPRV RDFQGVSKKA FDGRGNYTLG VKEQLIFPEI DYDKVSKVRG MDIVIVTTAN T DEEAR UniProtKB: Large ribosomal subunit protein uL5 |
+Macromolecule #24: 50S ribosomal protein L6
Macromolecule | Name: 50S ribosomal protein L6 / type: protein_or_peptide / ID: 24 / Number of copies: 1 / Enantiomer: LEVO |
---|---|
Source (natural) | Organism: Staphylococcus aureus (bacteria) |
Molecular weight | Theoretical: 19.400051 KDa |
Recombinant expression | Organism: Staphylococcus aureus (bacteria) |
Sequence | String: SRVGKKIIDI PSDVTVTFDG NHVTVKGPKG ELSRTLNERM TFKQEENTIE VVRPSDSKED RTNHGTTRAL LNNMVQGVSQ GYVKVLELV GVGYRAQMQG KDLILNVGYS HPVEIKAEEN ITFSVEKNTV VKVEGISKEQ VGALASNIRS VRPPEPYKGK G IRYQGEYV RRKEGK UniProtKB: Large ribosomal subunit protein uL6 |
+Macromolecule #25: 50S ribosomal protein L13
Macromolecule | Name: 50S ribosomal protein L13 / type: protein_or_peptide / ID: 25 / Number of copies: 1 / Enantiomer: LEVO |
---|---|
Source (natural) | Organism: Staphylococcus aureus (bacteria) |
Molecular weight | Theoretical: 16.359427 KDa |
Recombinant expression | Organism: Staphylococcus aureus (bacteria) |
Sequence | String: MRQTFMANES NIERKWYVID AEGQTLGRLS SEVASILRGK NKVTYTPHVD TGDYVIVINA SKIEFTGNKE TDKVYYRHSN HPGGIKSIT AGELRRTNPE RLIENSIKGM LPSTRLGEKQ GKKLFVYGGA EHPHAAQQPE NYELRG UniProtKB: Large ribosomal subunit protein uL13 |
+Macromolecule #26: 50S ribosomal protein L14
Macromolecule | Name: 50S ribosomal protein L14 / type: protein_or_peptide / ID: 26 / Number of copies: 1 / Enantiomer: LEVO |
---|---|
Source (natural) | Organism: Staphylococcus aureus (bacteria) |
Molecular weight | Theoretical: 13.157342 KDa |
Recombinant expression | Organism: Staphylococcus aureus (bacteria) |
Sequence | String: MIQQETRLKV ADNSGAREVL TIKVLGGSGR KTANIGDVIV CTVKNATPGG VVKKGDVVKA VIVRTKSGVR RNDGSYIKFD ENACVIIRD DKGPRGTRIF GPVARELREG NFMKIVSLAP EVL UniProtKB: Large ribosomal subunit protein uL14 |
+Macromolecule #27: 50S ribosomal protein L15
Macromolecule | Name: 50S ribosomal protein L15 / type: protein_or_peptide / ID: 27 / Number of copies: 1 / Enantiomer: LEVO |
---|---|
Source (natural) | Organism: Staphylococcus aureus (bacteria) |
Molecular weight | Theoretical: 15.515731 KDa |
Recombinant expression | Organism: Staphylococcus aureus (bacteria) |
Sequence | String: MKLHELKPAE GSRKERNRVG RGVATGNGKT SGRGHKGQKA RSGGGVRPGF EGGQLPLFRR LPKRGFTNIN RKEYAIVNLD QLNKFEDGT EVTPALLVES GVVKNEKSGI KILGNGSLDK KLTVKAHKFS ASAAEAIDAK GGAHEV UniProtKB: Large ribosomal subunit protein uL15 |
+Macromolecule #28: 50S ribosomal protein L16
Macromolecule | Name: 50S ribosomal protein L16 / type: protein_or_peptide / ID: 28 / Number of copies: 1 / Enantiomer: LEVO |
---|---|
Source (natural) | Organism: Staphylococcus aureus (bacteria) |
Molecular weight | Theoretical: 15.486276 KDa |
Recombinant expression | Organism: Staphylococcus aureus (bacteria) |
Sequence | String: MLLPKRVKYR RQHRPKTTGR SKGGNYVTFG EFGLQATTTS WITSRQIESA RIAMTRYMKR GGKVWIKIFP HTPYTKKPLE VRMGAGKGA VEGWIAVVKP GRILFEVAGV SEEVAREALR LASHKLPVKT KFVKREE UniProtKB: Large ribosomal subunit protein uL16 |
+Macromolecule #29: 50S ribosomal protein L17
Macromolecule | Name: 50S ribosomal protein L17 / type: protein_or_peptide / ID: 29 / Number of copies: 1 / Enantiomer: LEVO |
---|---|
Source (natural) | Organism: Staphylococcus aureus (bacteria) |
Molecular weight | Theoretical: 13.42035 KDa |
Recombinant expression | Organism: Staphylococcus aureus (bacteria) |
Sequence | String: RKLGRTSDQR KAMLRDLATS LIISERIETT EARAKEVRSV VEKLITLGKK GDLASRRNAA KTLRNVEILN EDETTQTALQ KLFGEIAER YTERQGGYTR ILKQGPRRGD GAESVIIELV UniProtKB: Large ribosomal subunit protein bL17 |
+Macromolecule #30: 50S ribosomal protein L18
Macromolecule | Name: 50S ribosomal protein L18 / type: protein_or_peptide / ID: 30 / Number of copies: 1 / Enantiomer: LEVO |
---|---|
Source (natural) | Organism: Staphylococcus aureus (bacteria) |
Molecular weight | Theoretical: 12.461404 KDa |
Recombinant expression | Organism: Staphylococcus aureus (bacteria) |
Sequence | String: MISKIDKNKV RLKRHARVRT NLSGTAEKPR LNVYRSNKHI YAQIIDDNKG VTLAQASSKD SDIATTATKV ELATKVGEAI AKKAADKGI KEIVFDRGGY LYHGRVKALA EAAR UniProtKB: UNIPROTKB: A0A6K6IAA8 |
+Macromolecule #31: 50S ribosomal protein L20
Macromolecule | Name: 50S ribosomal protein L20 / type: protein_or_peptide / ID: 31 / Number of copies: 1 / Enantiomer: LEVO |
---|---|
Source (natural) | Organism: Staphylococcus aureus (bacteria) |
Molecular weight | Theoretical: 13.459919 KDa |
Recombinant expression | Organism: Staphylococcus aureus (bacteria) |
Sequence | String: PRVKGGTVTR ARRKKTIKLA KGYFGSKHTL YKVAKQQVMK SGQYAFRDRR QRKRDFRKLW ITRINAAARQ HEMSYSRLMN GLKKAGIDI NRKMLSEIAI SDEKAFAQLV TKAKDAL UniProtKB: Large ribosomal subunit protein bL20 |
+Macromolecule #32: 50S ribosomal protein L21
Macromolecule | Name: 50S ribosomal protein L21 / type: protein_or_peptide / ID: 32 / Number of copies: 1 / Enantiomer: LEVO |
---|---|
Source (natural) | Organism: Staphylococcus aureus (bacteria) |
Molecular weight | Theoretical: 11.354081 KDa |
Recombinant expression | Organism: Staphylococcus aureus (bacteria) |
Sequence | String: MFAIIETGGK QIKVEEGQEI FVEKLDVNEG DTFTFDKVLF VGGDSVKVGA PTVEGATVTA TVNKQGRGKK ITVFTYKRRK NSKRKKGHR QPYTKLTIDK INA UniProtKB: Large ribosomal subunit protein bL21 |
+Macromolecule #33: 50S ribosomal protein L22
Macromolecule | Name: 50S ribosomal protein L22 / type: protein_or_peptide / ID: 33 / Number of copies: 1 / Enantiomer: LEVO |
---|---|
Source (natural) | Organism: Staphylococcus aureus (bacteria) |
Molecular weight | Theoretical: 12.328358 KDa |
Recombinant expression | Organism: Staphylococcus aureus (bacteria) |
Sequence | String: MEAKAVARTI RIAPRKVRLV LDLIRGKNAA EAIAILKLTN KASSPVIEKV LMSALANAEH NYDMNTDELV VKEAYANEGP TLKRFRPRA QGRASAINKR TSHITIVVSD GKE UniProtKB: UNIPROTKB: A0A6I4H7Y4 |
+Macromolecule #34: 50S ribosomal protein L23
Macromolecule | Name: 50S ribosomal protein L23 / type: protein_or_peptide / ID: 34 / Number of copies: 1 / Enantiomer: LEVO |
---|---|
Source (natural) | Organism: Staphylococcus aureus (bacteria) |
Molecular weight | Theoretical: 10.3801 KDa |
Recombinant expression | Organism: Staphylococcus aureus (bacteria) |
Sequence | String: EARDILKRPV ITEKSSEAMA EDKYTFDVDT RVNKTQVKMA VEEIFNVKVA SVNIMNYKPK KKRMGRYQGY TNKRRKAIVT LKEGSIDLF UniProtKB: Large ribosomal subunit protein uL23 |
+Macromolecule #35: 50S ribosomal protein L24
Macromolecule | Name: 50S ribosomal protein L24 / type: protein_or_peptide / ID: 35 / Number of copies: 1 / Enantiomer: LEVO |
---|---|
Source (natural) | Organism: Staphylococcus aureus (bacteria) |
Molecular weight | Theoretical: 11.316205 KDa |
Recombinant expression | Organism: Staphylococcus aureus (bacteria) |
Sequence | String: HIKKGDNVKV IAGKDKGKEG KVIATLPKKD RVVVEGVNIM KKHQKPTQLN PEGGILETEA AIHVSNVQLL DPKTNEPTRV GYKFVDGKK VRIAKKSGEE IKSN UniProtKB: Large ribosomal subunit protein uL24 |
+Macromolecule #36: 50S ribosomal protein L25
Macromolecule | Name: 50S ribosomal protein L25 / type: protein_or_peptide / ID: 36 / Number of copies: 1 / Enantiomer: LEVO |
---|---|
Source (natural) | Organism: Staphylococcus aureus (bacteria) |
Molecular weight | Theoretical: 10.391122 KDa |
Recombinant expression | Organism: Staphylococcus aureus (bacteria) |
Sequence | String: SLKSIIRQGK QTRSDLKQLR KSGKVPAVVY GYGTKNVSVK VDEVEFIKVI REVGRNGVIE LGVGSKTIKV MVADYQFDPL KNQITHIDF LAIN UniProtKB: UNIPROTKB: A0A6H3X640 |
+Macromolecule #37: 50S ribosomal protein L27
Macromolecule | Name: 50S ribosomal protein L27 / type: protein_or_peptide / ID: 37 / Number of copies: 1 / Enantiomer: LEVO |
---|---|
Source (natural) | Organism: Staphylococcus aureus (bacteria) |
Molecular weight | Theoretical: 8.911099 KDa |
Recombinant expression | Organism: Staphylococcus aureus (bacteria) |
Sequence | String: KKGVSSTKNG RDSESKRLGA KRADGQFVTG GSILYRQRGT KIYPGENVGR GGDDTLFAKI DGVVKFERKG RDKKQVSVYA VA UniProtKB: Large ribosomal subunit protein bL27 |
+Macromolecule #38: 50S ribosomal protein L28
Macromolecule | Name: 50S ribosomal protein L28 / type: protein_or_peptide / ID: 38 / Number of copies: 1 / Enantiomer: LEVO |
---|---|
Source (natural) | Organism: Staphylococcus aureus (bacteria) |
Molecular weight | Theoretical: 5.499432 KDa |
Recombinant expression | Organism: Staphylococcus aureus (bacteria) |
Sequence | String: ASTGNRRSHA LNSTKRRWNA NLQKVRILVD GKPKKVWVSA RALKSGKVT UniProtKB: Large ribosomal subunit protein bL28 |
+Macromolecule #39: 50S ribosomal protein L29
Macromolecule | Name: 50S ribosomal protein L29 / type: protein_or_peptide / ID: 39 / Number of copies: 1 / Enantiomer: LEVO |
---|---|
Source (natural) | Organism: Staphylococcus aureus (bacteria) |
Molecular weight | Theoretical: 7.331325 KDa |
Recombinant expression | Organism: Staphylococcus aureus (bacteria) |
Sequence | String: EIRDLTTSEI EEQIKSSKEE LFNLRFQLAT GQLEETARIR TVRKTIARLK TVAREREIEQ SK UniProtKB: Large ribosomal subunit protein uL29 |
+Macromolecule #40: 50S ribosomal protein L30
Macromolecule | Name: 50S ribosomal protein L30 / type: protein_or_peptide / ID: 40 / Number of copies: 1 / Enantiomer: LEVO |
---|---|
Source (natural) | Organism: Staphylococcus aureus (bacteria) |
Molecular weight | Theoretical: 6.305308 KDa |
Recombinant expression | Organism: Staphylococcus aureus (bacteria) |
Sequence | String: AKLQITLTRS VIGRPETQRK TVEALGLKKT NSSVVVEDNP AIRGQINKVK HLVTVEE UniProtKB: Large ribosomal subunit protein uL30 |
+Macromolecule #41: 50S ribosomalprotein L32p
Macromolecule | Name: 50S ribosomalprotein L32p / type: protein_or_peptide / ID: 41 / Number of copies: 1 / Enantiomer: LEVO |
---|---|
Source (natural) | Organism: Staphylococcus aureus (bacteria) |
Molecular weight | Theoretical: 5.406392 KDa |
Recombinant expression | Organism: Staphylococcus aureus (bacteria) |
Sequence | String: AVPKRRTSKT RKNKRRTHFK ISVPGMTECP NCGEYKLSHR VCKNCGS UniProtKB: UNIPROTKB: A0A6K0ZQ16 |
+Macromolecule #42: 50S ribosomal protein L33
Macromolecule | Name: 50S ribosomal protein L33 / type: protein_or_peptide / ID: 42 / Number of copies: 1 / Enantiomer: LEVO |
---|---|
Source (natural) | Organism: Staphylococcus aureus (bacteria) |
Molecular weight | Theoretical: 5.684561 KDa |
Recombinant expression | Organism: Staphylococcus aureus (bacteria) |
Sequence | String: RVNVTLACTE CGDRNYITTK NKRNNPERIE MKKYCPRLNK YTLHRET UniProtKB: Large ribosomal subunit protein bL33 |
+Macromolecule #43: 50S ribosomal protein L34
Macromolecule | Name: 50S ribosomal protein L34 / type: protein_or_peptide / ID: 43 / Number of copies: 1 / Enantiomer: LEVO |
---|---|
Source (natural) | Organism: Staphylococcus aureus (bacteria) |
Molecular weight | Theoretical: 5.252369 KDa |
Recombinant expression | Organism: Staphylococcus aureus (bacteria) |
Sequence | String: VKRTYQPNKR KHSKVHGFRK RMSTKNGRKV LARRRRKGRK VLS UniProtKB: Large ribosomal subunit protein bL34 |
+Macromolecule #44: 50S ribosomal protein L35
Macromolecule | Name: 50S ribosomal protein L35 / type: protein_or_peptide / ID: 44 / Number of copies: 1 / Enantiomer: LEVO |
---|---|
Source (natural) | Organism: Staphylococcus aureus (bacteria) |
Molecular weight | Theoretical: 6.985402 KDa |
Recombinant expression | Organism: Staphylococcus aureus (bacteria) |
Sequence | String: PKMKTHRGAA KRVKRTASGQ LKRSRAFTSH LFANKSTKQK RQLRKARLVS KSDMKRVKQL UniProtKB: UNIPROTKB: A0A6J8FVP5 |
+Macromolecule #45: 50S ribosomal protein L36
Macromolecule | Name: 50S ribosomal protein L36 / type: protein_or_peptide / ID: 45 / Number of copies: 1 / Enantiomer: LEVO |
---|---|
Source (natural) | Organism: Staphylococcus aureus (bacteria) |
Molecular weight | Theoretical: 4.318422 KDa |
Recombinant expression | Organism: Staphylococcus aureus (bacteria) |
Sequence | String: MKVRPSVKPI CEKCKVIKRK GKVMVICENP KHKQRQG UniProtKB: Large ribosomal subunit protein bL36 |
+Macromolecule #46: 50S ribosomal protein L31 type B
Macromolecule | Name: 50S ribosomal protein L31 type B / type: protein_or_peptide / ID: 46 / Number of copies: 1 / Enantiomer: LEVO |
---|---|
Source (natural) | Organism: Staphylococcus aureus (bacteria) |
Molecular weight | Theoretical: 8.603602 KDa |
Recombinant expression | Organism: Staphylococcus aureus (bacteria) |
Sequence | String: MKQGIHPEYH QVIFLDTTTN FKFLSGSTKT SSEMMEWEDG KEYPVIRLDI SSDSHPFYTG RQKFAAADGR VERF UniProtKB: Large ribosomal subunit protein bL31B |
-Experimental details
-Structure determination
Method | cryo EM |
---|---|
Processing | single particle reconstruction |
Aggregation state | particle |
-Sample preparation
Buffer | pH: 7.6 |
---|---|
Grid | Model: Quantifoil R1.2/1.3 / Material: COPPER / Mesh: 200 |
Vitrification | Cryogen name: ETHANE / Chamber humidity: 100 % / Chamber temperature: 277 K / Instrument: FEI VITROBOT MARK IV |
-Electron microscopy
Microscope | FEI TITAN KRIOS |
---|---|
Image recording | Film or detector model: GATAN K2 SUMMIT (4k x 4k) / Average electron dose: 47.0 e/Å2 |
Electron beam | Acceleration voltage: 300 kV / Electron source: FIELD EMISSION GUN |
Electron optics | Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD |
Experimental equipment | Model: Titan Krios / Image courtesy: FEI Company |
+Image processing
Particle selection | Number selected: 494375 |
---|---|
Startup model | Type of model: PDB ENTRY |
Final reconstruction | Resolution.type: BY AUTHOR / Resolution: 3.11 Å / Resolution method: FSC 0.143 CUT-OFF / Number images used: 123520 |
Initial angle assignment | Type: NOT APPLICABLE |
Final angle assignment | Type: NOT APPLICABLE |
+About Yorodumi
-News
-Feb 9, 2022. New format data for meta-information of EMDB entries
New format data for meta-information of EMDB entries
- Version 3 of the EMDB header file is now the official format.
- The previous official version 1.9 will be removed from the archive.
Related info.:EMDB header
External links:wwPDB to switch to version 3 of the EMDB data model
-Aug 12, 2020. Covid-19 info
Covid-19 info
URL: https://pdbj.org/emnavi/covid19.php
New page: Covid-19 featured information page in EM Navigator.
Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data
+Mar 5, 2020. Novel coronavirus structure data
Novel coronavirus structure data
- International Committee on Taxonomy of Viruses (ICTV) defined the short name of the 2019 coronavirus as "SARS-CoV-2".
- In the structure databanks used in Yorodumi, some data are registered as the other names, "COVID-19 virus" and "2019-nCoV". Here are the details of the virus and the list of structure data.
Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info
External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases
+Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)
EMDB accession codes are about to change! (news from PDBe EMDB page)
- The allocation of 4 digits for EMDB accession codes will soon come to an end. Whilst these codes will remain in use, new EMDB accession codes will include an additional digit and will expand incrementally as the available range of codes is exhausted. The current 4-digit format prefixed with “EMD-” (i.e. EMD-XXXX) will advance to a 5-digit format (i.e. EMD-XXXXX), and so on. It is currently estimated that the 4-digit codes will be depleted around Spring 2019, at which point the 5-digit format will come into force.
- The EM Navigator/Yorodumi systems omit the EMD- prefix.
Related info.:Q: What is EMD? / ID/Accession-code notation in Yorodumi/EM Navigator
External links:EMDB Accession Codes are Changing Soon! / Contact to PDBj
+Jul 12, 2017. Major update of PDB
Major update of PDB
- wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary.
- This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated.
- In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software).
- Now, EM Navigator and Yorodumi are based on the updated data.
External links:wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive
-Yorodumi
Thousand views of thousand structures
- Yorodumi is a browser for structure data from EMDB, PDB, SASBDB, etc.
- This page is also the successor to EM Navigator detail page, and also detail information page/front-end page for Omokage search.
- The word "yorodu" (or yorozu) is an old Japanese word meaning "ten thousand". "mi" (miru) is to see.
Related info.:EMDB / PDB / SASBDB / Comparison of 3 databanks / Yorodumi Search / Aug 31, 2016. New EM Navigator & Yorodumi / Yorodumi Papers / Jmol/JSmol / Function and homology information / Changes in new EM Navigator and Yorodumi