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Structure paper

タイトルIncreasing the structural coverage of tuberculosis drug targets.
ジャーナル・号・ページTuberculosis (Edinb), Vol. 95, Page 142-148, Year 2015
掲載日2009年3月30日 (構造データの登録日)
著者Baugh, L. / Phan, I. / Begley, D.W. / Clifton, M.C. / Armour, B. / Dranow, D.M. / Taylor, B.M. / Muruthi, M.M. / Abendroth, J. / Fairman, J.W. ...Baugh, L. / Phan, I. / Begley, D.W. / Clifton, M.C. / Armour, B. / Dranow, D.M. / Taylor, B.M. / Muruthi, M.M. / Abendroth, J. / Fairman, J.W. / Fox, D. / Dieterich, S.H. / Staker, B.L. / Gardberg, A.S. / Choi, R. / Hewitt, S.N. / Napuli, A.J. / Myers, J. / Barrett, L.K. / Zhang, Y. / Ferrell, M. / Mundt, E. / Thompkins, K. / Tran, N. / Lyons-Abbott, S. / Abramov, A. / Sekar, A. / Serbzhinskiy, D. / Lorimer, D. / Buchko, G.W. / Stacy, R. / Stewart, L.J. / Edwards, T.E. / Van Voorhis, W.C. / Myler, P.J.
リンクTuberculosis (Edinb) / PubMed:25613812
手法X線回折
解像度1.25 - 2.65 Å
構造データ

PDB-3gvc:
Crystal structure of probable short-chain dehydrogenase-reductase from Mycobacterium tuberculosis
手法: X-RAY DIFFRACTION / 解像度: 2.45 Å

PDB-3gvg:
Crystal structure of Triosephosphate isomerase from Mycobacterium tuberculosis
手法: X-RAY DIFFRACTION / 解像度: 1.55 Å

PDB-3gwc:
Crystal structure of Mycobacterium tuberculosis thymidylate synthase X bound to FdUMP and FAD
手法: X-RAY DIFFRACTION / 解像度: 1.9 Å

PDB-3h7f:
Crystal structure of serine hydroxymethyltransferase from Mycobacterium tuberculosis
手法: X-RAY DIFFRACTION / 解像度: 1.5 Å

PDB-3h81:
Crystal structure of enoyl-CoA hydratase from Mycobacterium tuberculosis
手法: X-RAY DIFFRACTION / 解像度: 1.8 Å

PDB-3he2:
Crystal structure of enoyl-CoA hydratase from Mycobacterium tuberculosis
手法: X-RAY DIFFRACTION / 解像度: 2.3 Å

PDB-3hwi:
Crystal structure of probable thiosulfate sulfurtransferase Cysa2 (Rhodanese-like protein) from Mycobacterium tuberculosis
手法: X-RAY DIFFRACTION / 解像度: 2.29 Å

PDB-3hwk:
Crystal structure of methylcitrate synthase from Mycobacterium tuberculosis
手法: X-RAY DIFFRACTION / 解像度: 2.3 Å

PDB-3hzg:
Crystal structure of mycobacterium tuberculosis thymidylate synthase X bound with FAD
手法: X-RAY DIFFRACTION / 解像度: 2.45 Å

PDB-3ico:
Crystal structure of 6-phosphogluconolactonase from Mycobacterium tuberculosis
手法: X-RAY DIFFRACTION / 解像度: 2.15 Å

PDB-3khp:
Crystal structure of a possible dehydrogenase from Mycobacterium tuberculosis at 2.3A resolution
手法: X-RAY DIFFRACTION / 解像度: 2.3 Å

PDB-3lls:
Crystal structure of 3-ketoacyl-(acyl-carrier-protein) reductase from Mycobacterium tuberculosis
手法: X-RAY DIFFRACTION / 解像度: 2.4 Å

PDB-3moy:
Crystal structure of probable enoyl-CoA hydratase from Mycobacterium smegmatis
手法: X-RAY DIFFRACTION / 解像度: 1.5 Å

PDB-3mpz:
Crystal structure of CYTIDINE DEAMINASE from Mycobacterium smegmatis
手法: X-RAY DIFFRACTION / 解像度: 1.7 Å

PDB-3myb:
Crystal structure of enoyl-coa hydratase mycobacterium smegmatis
手法: X-RAY DIFFRACTION / 解像度: 1.55 Å

PDB-3ndn:
Crystal structure of O-succinylhomoserine sulfhydrylase from Mycobacterium tuberculosis covalently bound to pyridoxal-5-phosphate
手法: X-RAY DIFFRACTION / 解像度: 1.85 Å

PDB-3ndo:
Crystal structure of deoxyribose phosphate aldolase from mycobacterium smegmatis
手法: X-RAY DIFFRACTION / 解像度: 1.25 Å

PDB-3nf4:
Crystal structure of acyl-CoA dehydrogenase from Mycobacterium thermoresistibile bound to flavin adenine dinucleotide
手法: X-RAY DIFFRACTION / 解像度: 2.35 Å

PDB-3ng3:
Crystal structure of deoxyribose phosphate aldolase from mycobacterium avium 104 in a schiff base with an unknown aldehyde
手法: X-RAY DIFFRACTION / 解像度: 2.15 Å

PDB-3njd:
Crystal structure of enoyl-coa hydratase from mycobacterium smegmatis
手法: X-RAY DIFFRACTION / 解像度: 1.75 Å

PDB-3nwo:
Crystal structure of Proline iminopeptidase Mycobacterium smegmatis
手法: X-RAY DIFFRACTION / 解像度: 1.9 Å

PDB-3o0m:
Crystal structure of a ZN-bound histidine triad family protein from Mycobacterium smegmatis
手法: X-RAY DIFFRACTION / 解像度: 1.9 Å

PDB-3o38:
Crystal structure of a short chain dehydrogenase from Mycobacterium smegmatis
手法: X-RAY DIFFRACTION / 解像度: 1.95 Å

PDB-3oc6:
Crystal structure of 6-phosphogluconolactonase from mycobacterium smegmatis, apo form
手法: X-RAY DIFFRACTION / 解像度: 2.1 Å

PDB-3oc7:
Crystal structure of an enoyl-CoA hydratase from Mycobacterium avium
手法: X-RAY DIFFRACTION / 解像度: 1.5 Å

PDB-3oi9:
Crystal structure of molybdenum cofactor synthesis domain from Mycobacterium avium
手法: X-RAY DIFFRACTION / 解像度: 1.95 Å

PDB-3oks:
Crystal structure of 4-aminobutyrate transaminase from mycobacterium smegmatis
手法: X-RAY DIFFRACTION / 解像度: 1.8 Å

PDB-3ome:
Crystal structure of a probable ENOYL-COA Hydratase from Mycobacterium Smegmatis
手法: X-RAY DIFFRACTION / 解像度: 2.05 Å

PDB-3p0t:
Crystal structure of an HIT-like protein from mycobacterium paratuberculosis
手法: X-RAY DIFFRACTION / 解像度: 1.9 Å

PDB-3p2y:
Crystal structure of alanine dehydrogenase/pyridine nucleotide transhydrogenase from Mycobacterium smegmatis
手法: X-RAY DIFFRACTION / 解像度: 1.82 Å

PDB-3p4i:
Crystal structure of acetate kinase from Mycobacterium avium
手法: X-RAY DIFFRACTION / 解像度: 2.35 Å

PDB-3p4t:
Crystal structure of a putative acyl-CoA dehydrogenase from Mycobacterium smegmatis
手法: X-RAY DIFFRACTION / 解像度: 1.7 Å

PDB-3p5m:
Crystal structure of an enoyl-CoA hydratase/isomerase from Mycobacterium avium
手法: X-RAY DIFFRACTION / 解像度: 2.05 Å

PDB-3p85:
Crystal structure enoyl-coa hydratase from mycobacterium avium
手法: X-RAY DIFFRACTION / 解像度: 1.9 Å

PDB-3pe8:
Crystal structure of Enoyl-CoA hydratase from Mycobacterium smegmatis
手法: X-RAY DIFFRACTION / 解像度: 1.6 Å

PDB-3pk0:
Crystal structure of Short-chain dehydrogenase/reductase SDR from Mycobacterium smegmatis
手法: X-RAY DIFFRACTION / 解像度: 1.75 Å

PDB-3ppi:
Crystal structure of 3-hydroxyacyl-CoA dehydrogenase type-2 from Mycobacterium avium
手法: X-RAY DIFFRACTION / 解像度: 2 Å

PDB-3pzy:
Crystal structure of Molybdopterin biosynthesis mog protein from Mycobacterium paratuberculosis
手法: X-RAY DIFFRACTION / 解像度: 1.8 Å

PDB-3q1t:
Crystal structure of enoyl-coA hydratase from Mycobacterium avium
手法: X-RAY DIFFRACTION / 解像度: 2.35 Å

PDB-3q8n:
Crystal structure of 4-aminobutyrate transaminase from Mycobacterium smegmatis
手法: X-RAY DIFFRACTION / 解像度: 2.05 Å

PDB-3qbp:
Crystal structure of fumarase Fum from Mycobacterium marinum
手法: X-RAY DIFFRACTION / 解像度: 1.85 Å

PDB-3qdf:
Crystal structure of 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase from Mycobacterium marinum
手法: X-RAY DIFFRACTION / 解像度: 2.05 Å

PDB-3qha:
Crystal structure of a Putative oxidoreductase from Mycobacterium avium 104
手法: X-RAY DIFFRACTION / 解像度: 2.25 Å

PDB-3qiv:
Crystal structure of a putative short-chain dehydrogenase or 3-oxoacyl-[acyl-carrier-protein] reductase from Mycobacterium paratuberculosis ATCC BAA-968 / K-10
手法: X-RAY DIFFRACTION / 解像度: 2.25 Å

PDB-3qk8:
Crystal structure of enoyl-coA hydratase EchA15 from Mycobacterium marinum in complex with an unknown ligand
手法: X-RAY DIFFRACTION / 解像度: 1.6 Å

PDB-3qka:
Crystal structure of enoyl-CoA hydratase EchA5 from Mycobacterium marinum
手法: X-RAY DIFFRACTION / 解像度: 2.15 Å

PDB-3qlj:
Crystal structure of a short chain dehydrogenase from Mycobacterium avium
手法: X-RAY DIFFRACTION / 解像度: 1.8 Å

PDB-3qmj:
Crystal structure of Enoyl-CoA hydratase EchA8_6 from Mycobacterium marinum
手法: X-RAY DIFFRACTION / 解像度: 2.2 Å

PDB-3qre:
Crystal structure of an enoyl-coA hydratase EchA12_1 from Mycobacterium marinum
手法: X-RAY DIFFRACTION / 解像度: 2.4 Å

PDB-3qua:
Crystal structure of a putative uncharacterized protein and possible Molybdenum cofactor protein from Mycobacterium smegmatis
手法: X-RAY DIFFRACTION / 解像度: 2.1 Å

PDB-3quv:
Crystal structure of a tRNA-guanine-N1-methyltransferase from Mycobacterium abscessus
手法: X-RAY DIFFRACTION / 解像度: 1.7 Å

PDB-3qxi:
Crystal structure of enoyl-CoA hydratase EchA1 from Mycobacterium marinum
手法: X-RAY DIFFRACTION / 解像度: 2.2 Å

PDB-3qxz:
Crystal structure of a probable enoyl-CoA hydratase/isomerase from Mycobacterium abscessus
手法: X-RAY DIFFRACTION / 解像度: 1.35 Å

PDB-3qyr:
Crystal structure of enoyl-coA hydratase EchA16_2 Mycobacterium paratuberculosis ATCC BAA-968 / K-10
手法: X-RAY DIFFRACTION / 解像度: 2.45 Å

PDB-3r0o:
Crystal structure of carnitinyl-CoA hydratase from Mycobacterium avium
手法: X-RAY DIFFRACTION / 解像度: 2.1 Å

PDB-3r1i:
Crystal structure of a short-chain type dehydrogenase/reductase from Mycobacterium marinum
手法: X-RAY DIFFRACTION / 解像度: 1.95 Å

PDB-3r1j:
Crystal structure of Alpha-ketoglutarate-dependent taurine dioxygenase from Mycobacterium avium, native form
手法: X-RAY DIFFRACTION / 解像度: 2.05 Å

PDB-3r20:
Crystal structure of cytidylate kinase from Mycobacterium smegmatis
手法: X-RAY DIFFRACTION / 解像度: 2 Å

PDB-3r2n:
Crystal structure of cytidine deaminase from Mycobacterium leprae
手法: X-RAY DIFFRACTION / 解像度: 2.3 Å

PDB-3r4t:
Crystal structure of 4-aminobutyrate aminotransferase GabT from Mycobacterium marinum covalently bound to pyridoxal phosphate
手法: X-RAY DIFFRACTION / 解像度: 2.5 Å

PDB-3r6h:
Crystal structure of an enoyl-CoA hydratase (ECHA3) from Mycobacterium marinum
手法: X-RAY DIFFRACTION / 解像度: 1.75 Å

PDB-3r6o:
Crystal structure of a probable 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase from Mycobacterium abscessus
手法: X-RAY DIFFRACTION / 解像度: 1.95 Å

PDB-3r7k:
Crystal structure of a probable acyl CoA dehydrogenase from Mycobacterium abscessus ATCC 19977 / DSM 44196
手法: X-RAY DIFFRACTION / 解像度: 2.5 Å

PDB-3r8c:
Crystal structure of cytidylate kinase (Cmk) from Mycobacterium abscessus
手法: X-RAY DIFFRACTION / 解像度: 2.2 Å

PDB-3r9p:
Crystal structure of AckA from Mycobacterium paratuberculosis ATCC BAA-968 / K-10
手法: X-RAY DIFFRACTION / 解像度: 1.9 Å

PDB-3r9q:
Structure of a probable enoyl-coa hydratase/isomerase from Mycobacterium abscessus ATCC 19977 / DSM 44196
手法: X-RAY DIFFRACTION / 解像度: 2.1 Å

PDB-3r9r:
Structure of a Phosphoribosylaminoimidazole-succinocarboxamide synthase from Mycobacterium abscessus ATCC 19977 / DSM 44196
手法: X-RAY DIFFRACTION / 解像度: 1.849 Å

PDB-3r9s:
Structure of a carnitinyl-CoA dehydratase from Mycobacterium avium 104
手法: X-RAY DIFFRACTION / 解像度: 2.2 Å

PDB-3r9t:
Structure of EchA1_1 from Mycobacterium paratuberculosis ATCC BAA-968 / K-10
手法: X-RAY DIFFRACTION / 解像度: 1.75 Å

PDB-3rd5:
Crystal structure of a putative uncharacterized protein from Mycobacterium Paratuberculosis
手法: X-RAY DIFFRACTION / 解像度: 1.5 Å

PDB-3rd7:
Crystal structure of acyl-coa thioesterase from mycobacterium avium
手法: X-RAY DIFFRACTION / 解像度: 1.95 Å

PDB-3rd8:
Crystal structure of fumarate hydratase class II Mycobacterium smegmatis
手法: X-RAY DIFFRACTION / 解像度: 2.2 Å

PDB-3rfq:
Crystal structure of Pterin-4-alpha-carbinolamine dehydratase MoaB2 from Mycobacterium marinum
手法: X-RAY DIFFRACTION / 解像度: 2.25 Å

PDB-3rih:
Crystal structure of a putative short chain dehydrogenase or reductase from Mycobacterium abscessus
手法: X-RAY DIFFRACTION / 解像度: 2.15 Å

PDB-3rr2:
Structure of a Cysteine synthase (O-Acetylserine Sulfhydrylase (OASS)) from Mycobacterium marinum ATCC BAA-535 / M
手法: X-RAY DIFFRACTION / 解像度: 1.95 Å

PDB-3rr6:
Structure of a putative uncharacterized protein from Mycobacterium abscessus ATCC 19977 / DSM 44196
手法: X-RAY DIFFRACTION / 解像度: 1.58 Å

PDB-3rrp:
Crystal structure of fumarate hydratase Fum from Mycobacterium abscessus with malate bound
手法: X-RAY DIFFRACTION / 解像度: 2.3 Å

PDB-3rrv:
Crystal structure of an enoyl-CoA hydratase/isomerase from Mycobacterium paratuberculosis
手法: X-RAY DIFFRACTION / 解像度: 2.45 Å

PDB-3rsi:
The structure of a putative enoyl-CoA hydratase/isomerase from Mycobacterium abscessus ATCC 19977 / DSM 44196
手法: X-RAY DIFFRACTION / 解像度: 2 Å

PDB-3rv2:
Crystal structure of S-adenosylmethionine synthetase from Mycobacterium marinum
手法: X-RAY DIFFRACTION / 解像度: 2 Å

PDB-3s82:
Structure of a S-adenosylmethionine synthetase from Mycobacterium avium
手法: X-RAY DIFFRACTION / 解像度: 1.73 Å

PDB-3sbx:
Crystal structure of a putative uncharacterized protein from Mycobacterium marinum bound to adenosine 5'-monophosphate AMP
手法: X-RAY DIFFRACTION / 解像度: 2.5 Å

PDB-3sf6:
Crystal structure of Glutaryl-CoA dehydrogenase from Mycobacterium smegmatis
手法: X-RAY DIFFRACTION / 解像度: 1.7 Å

PDB-3sll:
Crystal structure of a probable enoyl-CoA hydratase/isomerase from Mycobacterium abscessus
手法: X-RAY DIFFRACTION / 解像度: 2.35 Å

PDB-3svk:
Crystal structure of Acetyl-CoA acetyltransferase from Mycobacterium avium
手法: X-RAY DIFFRACTION / 解像度: 2.2 Å

PDB-3svt:
Structure of a short-chain type dehydrogenase/reductase from Mycobacterium ulcerans
手法: X-RAY DIFFRACTION / 解像度: 2 Å

PDB-3swo:
Crystal structure of a glutaryl-coa dehydrogenase from mycobacterium smegmatis in complex with FADH2
手法: X-RAY DIFFRACTION / 解像度: 1.45 Å

PDB-3swt:
Crystal Structure of the Taurine catabolism dioxygenase, TauD from Mycobacterium marinum
手法: X-RAY DIFFRACTION / 解像度: 2.05 Å

PDB-3swx:
Crystal structure of a probable enoyl-CoA hydratase/isomerase from Mycobacterium abscessus
手法: X-RAY DIFFRACTION / 解像度: 2.1 Å

PDB-3t3w:
Crystal structure of probable enoyl-COA hydratase from mycobacterium thermoresistibile
手法: X-RAY DIFFRACTION / 解像度: 1.8 Å

PDB-3tav:
Crystal structure of a Methionine Aminopeptidase from Mycobacterium abscessus
手法: X-RAY DIFFRACTION / 解像度: 2.15 Å

PDB-3tcr:
Crystal structure of a molybdopterin biosynthesis protein from Mycobacterium abscessus
手法: X-RAY DIFFRACTION / 解像度: 2.3 Å

PDB-3tde:
Crystal structure of S-adenosylmethionine synthetase Rv1392 from Mycobacterium tuberculosis
手法: X-RAY DIFFRACTION / 解像度: 1.85 Å

PDB-3tjr:
Crystal structure of a Rv0851c ortholog short chain dehydrogenase from Mycobacterium paratuberculosis
手法: X-RAY DIFFRACTION / 解像度: 1.6 Å

PDB-3tl3:
Structure of a short-chain type dehydrogenase/reductase from Mycobacterium ulcerans
手法: X-RAY DIFFRACTION / 解像度: 1.85 Å

PDB-3tlf:
Crystal structure of an enoyl-CoA hydratase/isomerase from Mycobacterium paratuberculosis
手法: X-RAY DIFFRACTION / 解像度: 2.15 Å

PDB-3trr:
Crystal structure of a probable enoyl-CoA hydratase/isomerase from Mycobacterium abscessus
手法: X-RAY DIFFRACTION / 解像度: 2.09 Å

PDB-3tx2:
Structure of a Probable 6-phosphogluconolactonase from Mycobacterium abscessus
手法: X-RAY DIFFRACTION / 解像度: 1.5 Å

PDB-3tzq:
Crystal structure of a short-chain type dehydrogenase/reductase from Mycobacterium marinum
手法: X-RAY DIFFRACTION / 解像度: 2.5 Å

PDB-3tzu:
Crystal structure of a glycine cleavage system H protein (GCVH) from Mycobacterium marinum
手法: X-RAY DIFFRACTION / 解像度: 2.3 Å

PDB-3u0a:
Crystal structure of an Acyl-CoA thioesterase II TesB2 from Mycobacterium marinum
手法: X-RAY DIFFRACTION / 解像度: 2.5 Å

PDB-3u0b:
Crystal structure of an oxidoreductase from Mycobacterium smegmatis
手法: X-RAY DIFFRACTION / 解像度: 1.7 Å

PDB-3ucx:
The structure of a Short chain dehydrogenase from Mycobacterium smegmatis
手法: X-RAY DIFFRACTION / 解像度: 1.85 Å

PDB-3uve:
Crystal structure of Carveol dehydrogenase ((+)-trans-carveol dehydrogenase) from Mycobacterium avium
手法: X-RAY DIFFRACTION / 解像度: 1.55 Å

PDB-4di1:
Crystal structure of enoyl-CoA hydratase EchA17 from Mycobacterium marinum
手法: X-RAY DIFFRACTION / 解像度: 2.25 Å

PDB-4die:
Crystal structure of a cytidylate kinase CmK from Mycobacterium abscessus bound to cytidine-5'-monophosphate
手法: X-RAY DIFFRACTION / 解像度: 2.65 Å

PDB-4dq8:
Crystal structure of acetate kinase AckA from Mycobacterium marinum
手法: X-RAY DIFFRACTION / 解像度: 2.25 Å

PDB-4dxl:
Crystal structure of IspE (4-diphosphocytidyl-2-C-methyl-D-erythritol kinase) from Mycobacterium abscessus, bound to CMP and ATP
手法: X-RAY DIFFRACTION / 解像度: 2 Å

PDB-4ed4:
Crystal structure of IspE (4-diphosphocytidyl-2-C-methyl-D-erythritol kinase) from Mycobacterium abcessus, bound to ATP
手法: X-RAY DIFFRACTION / 解像度: 1.75 Å

PDB-4ege:
Crystal Structure of Dipeptidase PepE from Mycobacterium ulcerans
手法: X-RAY DIFFRACTION / 解像度: 2.2 Å

PDB-4egf:
Crystal structure of a L-xylulose reductase from Mycobacterium smegmatis
手法: X-RAY DIFFRACTION / 解像度: 2.3 Å

PDB-4emd:
Crystal structure of IspE (4-diphosphocytidyl-2-C-methyl-D-erythritol kinase) from Mycobacterium abcessus, bound to CMP and SO4
手法: X-RAY DIFFRACTION / 解像度: 1.75 Å

PDB-4eo9:
Crystal structure of a phosphoglycerate mutase gpm1 from Mycobacterium leprae
手法: X-RAY DIFFRACTION / 解像度: 2.45 Å

PDB-4eye:
Crystal structure of a probable oxidoreductase from Mycobacterium abscessus solved by iodide ion SAD
手法: X-RAY DIFFRACTION / 解像度: 2.1 Å

PDB-4f3w:
Crystal structure of cytidine deaminase Cdd from Mycobacterium marinum
手法: X-RAY DIFFRACTION / 解像度: 1.8 Å

PDB-4f47:
The Structure of Enoyl-CoA hydratase EchA19 from Mycobacterium marinum
手法: X-RAY DIFFRACTION / 解像度: 1.75 Å

PDB-4ffc:
Crystal structure of a 4-aminobutyrate aminotransferase (GabT) from Mycobacterium abscessus
手法: X-RAY DIFFRACTION / 解像度: 1.8 Å

PDB-4gk6:
X-ray crystal structure of a hypothetical deoxyuridine 5-triphosphate nucleotidohydrolase from Mycobacterium abscessus
手法: X-RAY DIFFRACTION / 解像度: 1.65 Å

PDB-4hdt:
Crystal structure of a Carnitinyl-CoA dehydratase from Mycobacterium thermoresistibile
手法: X-RAY DIFFRACTION / 解像度: 1.6 Å

PDB-4hr3:
Structure of a putative acyl-CoA dehydrogenase from Mycobacterium abscessus
手法: X-RAY DIFFRACTION / 解像度: 1.8 Å

PDB-4i1y:
The structure of Cysteine synthase from Mycobacterium ulcerans Agy99
手法: X-RAY DIFFRACTION / 解像度: 2.6 Å

PDB-4ijn:
Crystal structure of an acetate kinase from Mycobacterium smegmatis bound to AMP and sulfate
手法: X-RAY DIFFRACTION / 解像度: 1.7 Å

PDB-4iv6:
X-ray crystal structure of an isovaleryl-CoA dehydrogenase from Mycobacterium smegmatis
手法: X-RAY DIFFRACTION / 解像度: 2 Å

PDB-4iz9:
Crystal structure of an acetate kinase from Mycobacterium avium bound to an unknown acid-ApCpp conjugate and manganese
手法: X-RAY DIFFRACTION / 解像度: 1.98 Å

PDB-4j5i:
Crystal structure of an alpha-ketoglutarate-dependent taurine dioxygenase from Mycobacterium smegmatis
手法: X-RAY DIFFRACTION / 解像度: 2.6 Å

PDB-4kam:
X-ray crystal structure of O-acetylhomoserine sulfhydrylase MetC from Mycobacterium marinum ATCC BAA-535 / M
手法: X-RAY DIFFRACTION / 解像度: 2 Å

PDB-4lgv:
X-ray crystal structure of Glucose-6-phosphate 1-dehydrogenase from Mycobacterium avium
手法: X-RAY DIFFRACTION / 解像度: 2.3 Å

PDB-4o2d:
Crystal structure of aspartyl-tRNA synthetase from Mycobacterium smegmatis with bound aspartic acid
手法: X-RAY DIFFRACTION / 解像度: 2.6 Å

化合物

ChemComp-HOH:
WATER

ChemComp-GOL:
GLYCEROL / グリセロ-ル

ChemComp-FAD:
FLAVIN-ADENINE DINUCLEOTIDE / FAD / FAD*YM

ChemComp-UFP:
5-FLUORO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE / FdUMP / 阻害剤*YM

ChemComp-MG:
Unknown entry / マグネシウムジカチオン

ChemComp-CA:
Unknown entry / カルシウムジカチオン

ChemComp-PGE:
TRIETHYLENE GLYCOL / トリエチレングリコ-ル

ChemComp-SIN:
SUCCINIC ACID / コハク酸

ChemComp-PO4:
PHOSPHATE ION / ホスファ-ト

ChemComp-SO4:
SULFATE ION / 硫酸ジアニオン

ChemComp-CL:
Unknown entry / クロリド

ChemComp-TLA:
L(+)-TARTARIC ACID / L-酒石酸

ChemComp-EDO:
1,2-ETHANEDIOL / エチレングリコ-ル

ChemComp-TRS:
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL / トリス(ヒドロキシメチル)メチルアンモニウム / pH緩衝剤*YM

ChemComp-NA:
Unknown entry / ナトリウムカチオン

ChemComp-ZN:
Unknown entry

ChemComp-NH4:
AMMONIUM ION / アンモニウム


化合物 画像なし

ChemComp-UNL:
Unknown ligand

ChemComp-ACT:
ACETATE ION / 酢酸イオン

ChemComp-AMP:
ADENOSINE MONOPHOSPHATE / AMP / AMP*YM

ChemComp-MPD:
(4S)-2-METHYL-2,4-PENTANEDIOL / (S)-2-メチル-2,4-ペンタンジオ-ル / 沈殿剤*YM

ChemComp-FMT:
FORMIC ACID / ギ酸

ChemComp-FAO:
[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (2R,3S,4S)-5-[(4aS,10aR)-7,8-dimethyl-2,4-dioxo-1,3,4,4a,5,10a-hexahydrobenzo[g]pteridin-10(2H)-yl]-2,3,4-trihydroxypentyl dihydrogen diphosphate

ChemComp-CAC:
CACODYLATE ION / ジメチルアルシン酸アニオン

ChemComp-1PE:
PENTAETHYLENE GLYCOL / ペンタエチレングリコ-ル / 沈殿剤*YM

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER / ジエチレングリコ-ル

ChemComp-SSN:
4-oxobutanoic acid / こはく酸セミアルデヒド

ChemComp-K:
Unknown entry / カリウムカチオン

ChemComp-FE:
Unknown entry

ChemComp-DPO:
DIPHOSPHATE / ジホスファ-ト

ChemComp-FDA:
DIHYDROFLAVINE-ADENINE DINUCLEOTIDE / FADH2

ChemComp-MRD:
(4R)-2-METHYLPENTANE-2,4-DIOL / (4R)-2-メチル-2,4-ペンタンジオ-ル / 沈殿剤*YM

ChemComp-BEZ:
BENZOIC ACID / 安息香酸

ChemComp-EPE:
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID / HEPES / pH緩衝剤*YM

ChemComp-B3P:
2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL / 2,2′-(トリメチレンビスイミノ)ビス[2-(ヒドロキシメチル)プロパン-1,3-ジオ-ル] / pH緩衝剤*YM

ChemComp-PG5:
1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE / トリグライム

ChemComp-UNX:
Unknown entry

ChemComp-LMR:
(2S)-2-hydroxybutanedioic acid / L-りんご酸

ChemComp-IOD:
IODIDE ION / ヨ-ジド

ChemComp-MLT:
D-MALATE / D-りんご酸

ChemComp-PG0:
2-(2-METHOXYETHOXY)ETHANOL / ジエチレングリコ-ルモノメチルエ-テル / 阻害剤, 沈殿剤*YM

ChemComp-NAD:
NICOTINAMIDE-ADENINE-DINUCLEOTIDE / NAD*YM

ChemComp-PG4:
TETRAETHYLENE GLYCOL / テトラエチレングリコ-ル / 沈殿剤*YM

ChemComp-C5P:
CYTIDINE-5'-MONOPHOSPHATE / CMP

ChemComp-ATP:
ADENOSINE-5'-TRIPHOSPHATE / ATP / ATP, エネルギー貯蔵分子*YM

ChemComp-MN:
Unknown entry

ChemComp-APC:
DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER / α,β-メチレンATP / AMP-CPP, エネルギー貯蔵分子類似体*YM

ChemComp-ASP:
ASPARTIC ACID / アスパラギン酸

由来
  • mycobacterium tuberculosis (結核菌)
  • mycobacterium tuberculosis h37rv (結核菌)
  • mycobacterium smegmatis (バクテリア)
  • mycobacterium thermoresistibile (バクテリア)
  • mycobacterium avium (バクテリア)
  • mycobacterium smegmatis str. mc2 155 (バクテリア)
  • mycobacterium avium subsp. paratuberculosis (バクテリア)
  • mycobacterium marinum (バクテリア)
  • mycobacterium marinum m (バクテリア)
  • mycobacterium abscessus (バクテリア)
  • mycobacterium leprae (らい菌)
  • mycobacterium paratuberculosis (バクテリア)
  • mycobacterium ulcerans (バクテリア)
キーワードOXIDOREDUCTASE / SSGCID / deCODE / NIAID / UWPPG / SBRI / Structural Genomics / Seattle Structural Genomics Center for Infectious Disease / ISOMERASE / TRIOSEPHOSPHATE ISOMERASE / MYCOBACTERIUM TUBERCULOSIS / Gluconeogenesis / Glycolysis / Pentose shunt / TRANSFERASE / ThyX / FAD / FdUMP / Flavoprotein / Methyltransferase / Nucleotide biosynthesis / serine hydroxymethyltransferase / One-carbon metabolism / Pyridoxal phosphate / LYASE / infectious disease / MPCS / Fatty acid metabolism / Lipid metabolism / enoyl-CoA hydratase / Seattle Structural Center for Infectious Disease / UW / tuberculosis / Tubercluosis / Acyltransferase / thymidylate synthase / HYDROLASE / dehydrogenase / EMERALD BIOSTRUCTURES / 3-KETOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE / enoyl CoA / Actinobacteria / MYCOBACTERIUM SMEGMATIS / CYTIDINE DEAMINASE / mycobacterium / PLP / Schiff base / transamination / NIH / ALS COLLABORATIVE CRYSTALLOGRAPHY / DEOXYRIBOSEPHOSPHATE ALDOLASE / FADH / acyl-coA / ALS DEOXYRIBOSEPHOSPHATE ALDOLASE / MYCOBACTERIUM AVIUM 104 / MYCOBACERIUM SMEGMATIS / proline iminopeptidase / ortholog from a non-pathogenic species / Carboxylic Ester Hydrolase / non-pathogenic Mycobacterium species / ortholog / Johne's disease in cattle / paratuberculosis / Crohn's disease in humans / hydratase / crotonase / BIOSYNTHETIC PROTEIN / paratubercluosis / molybdenum cofactor / moco / UNKNOWN FUNCTION / HIT-LIKE PROTEIN / MYCOBACERIUM PARATUBERCULOSIS / non-pathogenic species / pyruvate / propanoate / acetyl-CoA biosynthesis / kinase / Acyl-CoA dehydrogenase / Coenzyme A / MYCOBACERIUM AVIUM / 3-hydroxyacyl-CoA dehydrogenase type-2 / Mycobacterium avium / enoyl-CoA / acetyl CoA / fumarase / 2-hydroxyhepta-2 / 4-diene-1 / 7-dioate isomerase / Rv2993c ortholog / homoprotocatechuate degradative pathway / 4-dienedioate / 2-oxohept-3-enedioate / rossmann fold / Putative oxidoreductase / NADB_Rossman superfamily / NAD / NADH / short chain dehydrogenase / NADP / non-pathogenic strain / SDR / opportunistic infections in humans / associated with swimming / fish-tank / putative uncharacterized protein / lysine-decarboxylase like protein / Molybdenum cofactor protein like protein / possibly misannotated homologs / unknown ligand / SSSGCID / tRNA methyltransferase / trmD / S-adenosyl-methionine / S-adenosyl-homocysteine / SAM / SAH / chronic lung disease / protein knot / 3(1) trefoil knot / domain swap / marinum / water-borne pathogen / fatty acid synthesis / rapid growing Mycobacterium species / water contaminant / fatty acid biosynthesis / FAB / water borne pathogen / cytidylate kinase / ADP / dCMP / dCDP / CDA / pyrimidine salvage / homotetramer / drug resistance / zinc binding protein / catalytic zinc / smegmatis / LLP / gamma amino butyric acid / GABA / GABA transferase / Gabaculine / Phenelzine / Aminooxyacetic acid / Phenylethylidenehydrazine / Vigabatrin / Valproic acid / MYCOBACERIUM MARINUM / 7-dioateisomerase / rapid growing mycobacterium / pyrimidine nucleoside monophosphate kinase / phosphotransferase / acetate kinase / enoyl-coa hydratase/isomerase / LIGASE / Phosphoribosylaminoimidazole-succinocarboxamide synthase / carnitinyl-CoA dehydratase / ACYL-COA THIOESTERASE / fumarate hydratase class II / cofactor iosynthesis / GTP / pterin / potassium ion / O-Acetylserine Sulfhydrylase (OASS) / Cysteine synthase / fumerate / malic acid / enoyl CoA hydratase / S-adenosylmethionine / AdoMet / AdoMet synthase / methyl donor / methylation / S-adenosylmethionine synthetase / Molybdenum cofactor binding protein / orthologs are possible misannotated as possible or putative lysine decarboxylases / AMP was MS verified / proteomics / GLUTARYL-COA DEHDROGENASE / FADH2 / Taurine catabolism dioxygenase / TauD / dioxygenase / protease / auto-catalytic removal of tag / metalloexopeptidase / no anomalous signal indicates magnesium ions in active site / cobalt binding / M24A family / MPT / pyranopterin-dithiolate / cofactor biosynthesis / SCD / nucleotide adenine dinucleotide / 5-hydroxy NAD / asymmetric substrate or cofactor recognition / otholog / enoyl-CoA isomerase/hydratase family protein / metabolism / unsaturated fatty acids / Probable 6-phosphogluconolactonase / TRANSPORT PROTEIN / Acyl-CoA thioesterase II / marine parasite / Cytidine monophosphate kinase / CK / acetokinase / ATP-dependent / metabolic intermediate biosynthesis / cytoplasmic / National Institute of Allergy and Infectious Diseases / pathogenic bacterium / FadB4 ortholog / virulence / cytidine / uridine / zinc binding enzyme / GabT / pyridoxal phosphate binding / aminotransferase / Mycobacterium thermoresistibile / SYNTHASE / proprionate kinase / hydrolysis / AckA / propionate kinase / acid-kinase / non-hydrolyzable ATP analog / anomalous manganese signal / unknown conjugate / iron-dependent / molecular oxygen / O-acetylhomoserine sulfhydrylase / mycobaterium / tRNA synthetase / AspS / AspRS

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万見文献について

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お知らせ

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2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

  • EMDBのヘッダファイルのバージョン3が、公式のフォーマットとなりました。
  • これまでは公式だったバージョン1.9は、アーカイブから削除されます。

関連情報:EMDBヘッダ

外部リンク:wwPDBはEMDBデータモデルのバージョン3へ移行します

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2020年8月12日: 新型コロナ情報

新型コロナ情報

URL: https://pdbj.org/emnavi/covid19.php

新ページ: EM Navigatorに新型コロナウイルスの特設ページを開設しました。

関連情報:Covid-19情報 / 2020年3月5日: 新型コロナウイルスの構造データ

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2020年3月5日: 新型コロナウイルスの構造データ

新型コロナウイルスの構造データ

関連情報:万見生物種 / 2020年8月12日: 新型コロナ情報

外部リンク:COVID-19特集ページ - PDBj / 今月の分子2020年2月：コロナウイルスプロテーアーゼ

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2019年1月31日: EMDBのIDの桁数の変更

EMDBのIDの桁数の変更

  • EMDBエントリに付与されているアクセスコード(EMDB-ID)は4桁の数字(例、EMD-1234)でしたが、間もなく枯渇します。これまでの4桁のID番号は4桁のまま変更されませんが、4桁の数字を使い切った後に発行されるIDは5桁以上の数字(例、EMD-12345)になります。5桁のIDは2019年の春頃から発行される見通しです。
  • EM Navigator/万見では、接頭語「EMD-」は省略されています。

関連情報:Q: 「EMD」とは何ですか？ / 万見/EM NavigatorにおけるID/アクセスコードの表記

外部リンク:EMDB Accession Codes are Changing Soon! / PDBjへお問い合わせ

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2017年7月12日: PDB大規模アップデート

PDB大規模アップデート

  • 新バージョンのPDBx/mmCIF辞書形式に基づくデータがリリースされました。
  • 今回の更新はバージョン番号が4から5になる大規模なもので、全エントリデータの書き換えが行われる「Remediation」というアップデートに該当します。
  • このバージョンアップで、電子顕微鏡の実験手法に関する多くの項目の書式が改定されました(例：em_softwareなど)。
  • EM NavigatorとYorodumiでも、この改定に基づいた表示内容になります。

外部リンク:wwPDB Remediation / OneDepデータ基準に準拠した、より強化された内容のモデル構造ファイルが、PDBアーカイブで公開されました。

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万見文献

EMDB/PDB/SASBDBから引用されている文献のデータベース

  • EMDB/PDB/SASBDBのエントリから引用されている文献のデータベースです
  • Pubmedのデータを利用しています

関連情報:EMDB / PDB / SASBDB / 万見 (Yorodumi) / EMN文献 / 新しいEM Navigatorと万見の変更点

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