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Showing all 33 items for Latest entries: new EMDB

EMDB-0294: Bacteriophage phi6 dsRNA genome, layer 2
Method: single particle / : Ilca SL, Huiskonen JT

EMDB-0295: Bacteriophage phi6 dsRNA genome, layer 3
Method: single particle / : Ilca SL, Huiskonen JT

EMDB-0296: Bacteriophage phi6 dsRNA genome, layers 4 and 5
Method: single particle / : Ilca SL, Huiskonen JT

EMDB-0299: Bacteriophage phi6 nucleocapsid reconstructed with icosahedral symmetry
Method: icosahedral / : Ilca SL, Huiskonen JT

EMDB-0300: Reconstruction of dsRNA bacteriophage phi6 nucleocapsid with D3 symmetry
Method: single particle / : Ilca SL, Huiskonen JT

EMDB-0303: Bacteriophage phi6 dsRNA genome, layer 1, conformation pseudo C2
Method: single particle / : Ilca SL, Huiskonen JT

EMDB-0340: EM structure of the DNA wrapping in bacterial open transcription initiation complex
Method: single particle / : Florez-Ariza A, Cassago A, de Oliveira PSL, Guerra DG, Portugal RV

EMDB-0344: CryoEM structure of Leviviridae PP7 WT coat protein dimer capsid (PP7PP7-WT)
Method: icosahedral / : Liangjun Z, Kopylov M, Potter CS, Carragher B, Finn MG

EMDB-0347: Apo form metabotropic glutamate receptor 5 with Nanobody 43
Method: single particle / : Koehl A, Hu H, Feng D, Zhang Y, Sun B, Kobilka TS, Pardon E, Steyaert J, Mathiesen JM, Skiniotis G, Kobilka BK

EMDB-0351: CryoEM structure of Leviviridae PP7 WT coat protein dimer capsid (PP7PP7-WT)
Method: single particle / : Liangjun Z, Kopylov M, Carragher B, Potter CS, Finn MG

EMDB-0352: CryoEM structure of Leviviridae PP7 WT coat protein dimer capsid (PP7PP7-WT)
Method: icosahedral / : Liangjun Z, Kopylov M, Carragher B, Potter CS, Finn MG

EMDB-0353: CryoEM structure of Leviviridae PP7 coat protein dimer capsid with a loop insertion (PP7-aloop-PP7)
Method: icosahedral / : Liangjun Z, Kopylov M, Carragher B, Potter CS, Finn MG

EMDB-0354: CryoEM structure of Leviviridae PP7 coat protein dimer capsid with a loop insertion and a C-terminal extension (PP7-aloop-PP7-150loop)
Method: icosahedral / : Liangjun Z, Kopylov M, Carragher B, Potter CS, Finn MG

EMDB-0433: AMC011 v4.2 SOSIP Env trimer in complex with fusion peptide targeting antibody ACS202 fragment antigen binding
Method: single particle / : Ozorowski G, de Val N, Cottrell CA, Copps J, Ward AB

EMDB-0434: AMC011 v4.2 SOSIP Env trimer in complex with fusion peptide targeting antibody VRC34 fragment antigen binding
Method: single particle / : Ozorowski G, Torres JL, Cottrell CA, Ward AB

EMDB-0442: Type III-A CRISPR Effector Subcomplex from Staphylococcus epidermidis RP62a
Method: single particle / : Dorsey BW, Mondragon A

EMDB-0444: Cryo-tomogram subregion, Plastin k.o. mouse utricle stereocilia
Method: electron tomography / : Barr-Gillespie PG, Auer M

EMDB-4520: EM structure of a EBOV-GP bound to 3T0331 neutralizing antibody
Method: single particle / : Diskin R, Cohen-Dvashi H

EMDB-4521: EM structure of a EBOV-GP bound to 4M0368 neutralizing antibody
Method: single particle / : Diskin R, Cohen-Dvashi H

EMDB-8950: Cryo-EM structure at 3.5 A resolution of vaccine-elicited, fusion peptide-directed antibody OPV21 in complex with HIV-1 Env BG505 DS-SOSIP, and antibodies VRC03 and PGT122
Method: single particle / : Acharya P, Kwong PD

EMDB-8980: Suppressed
Method: single particle / : Suppressed X, Suppressed X, Suppressed X, Suppressed X

EMDB-9232: Suppressed
Method: helical / : Suppressed X, Suppressed X, Suppressed X, Suppressed X

EMDB-9321: Suppressed
Method: single particle / : Suppressed X, Suppressed X, Suppressed X

EMDB-9326: Suppressed
Method: single particle / : Suppressed X, Suppressed X, Suppressed X

EMDB-9340: Cryo-EM map of VEEV-TC-83 fixed with 1% glutaraldehyde
Method: single particle / : Parvate AD, Jonsson CJ

EMDB-9364: The structure of TRIM5alpha trimer in complex with HIV-1 capsid tubes
Method: subtomogram averaging / : Skorupka KA, Ganser-Pornillos BK, Pornillos O

EMDB-9365: The structure of TRIM5alpha trimer in complex with HIV-1 capsid tubes
Method: subtomogram averaging / : Skorupka KA, Ganser-Pornillos BK, Pornillos O

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Feb 20, 2018. PDBj/BINDS workshop in Osaka University

PDBj/BINDS workshop in Osaka University

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    Oct 4, 2017. Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

    Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

    • Jacques Dubochet (University of Lausanne, Switzerland) is a pioneer of ice-embedding method of EM specimen (as known as cryo-EM), Most of 3DEM structures in EMDB and PDB are obtained using his method.
    • Joachim Frank (Columbia University, New York, USA) is a pioneer of single particle reconstruction, which is the most used reconstruction method for 3DEM structures in EMDB and EM entries in PDB. And also, he is a develper of Spider, which is one of the most famous software in this field, and is used for some EM Navigor data (e.g. map projection/slice images).
    • Richard Henderson (MRC Laboratory of Molecular Biology, Cambridge, UK) was determined the first biomolecule structure by EM. The first EM entry in PDB, PDB-1brd is determinedby him.

    External links: The 2017 Nobel Prize in Chemistry - Press Release

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    Jul 12, 2017. Major update of PDB

    Major update of PDB

    • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary. This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated. See below links for details.
    • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software). Now, EM Navigator and Yorodumi are based on the updated data.

    External links: wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

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    Jun 16, 2017. Omokage search with filter

    Omokage search with filter

    • Result of Omokage search can be filtered by keywords and the database types

    Related info.: Omokage search

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    Sep 15, 2016. EM Navigator & Yorodumi renewed

    EM Navigator & Yorodumi renewed

    • New versions of EM Navigator and Yorodumi started

    Related info.: Changes in new EM Navigator and Yorodumi

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    EMN Search

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    • Advanced data search for EMDB and EM data in PDB widh various search and display options

    Related info.: EMDB / PDB / EM Navigator / Q: What is the data source of EM Navigator? / Yorodumi Search

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