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Showing all 19 items for Latest entries: new EMDB

EMDB-0298: Suppressed
Method: helical / : Suppressed X, Suppressed X, Suppressed X

EMDB-0306: Bacteriophage phi6 dsRNA genome, layer 1, conformation pseudo D3', sub-conformation 3
Method: single particle / : Ilca SL, Huiskonen JT

EMDB-4400: CryoEM reconstruction of full-length, fully-glycosylated human butyrylcholinesterase tetramer
Method: single particle / : Leung MR, van Bezouwen LS, Schopfer LM, Sussman JL, Silman I, Lockridge O, Zeev-Ben-Mordehai T

EMDB-4402: Electron microscopy map of human IMPDH isoform 1 bound to GDP in 150 g/L Ficoll-70
Method: helical / : Martin-Benito J, Nunez R, Fernandez-Justel D, Revuelta JL, Buey RM

EMDB-4403: Electron microscopy map of human IMPDH isoform 1 bound to ATP in 150 g/L Ficoll-70
Method: helical / : Martin-Benito J, Nunez R, Fernandez-Justel D, Revuelta JL, Buey RM

EMDB-9132: Ion Channel Structure
Method: single particle / : Wang L, Fu TM, Xia S, Wu H

EMDB-9133: Ion Channel Structure
Method: single particle / : Wang L, Fu TM, Xia S, Wu H

EMDB-9134: Suppressed
Method: single particle / : Suppressed X, Suppressed X, Suppressed X, Suppressed X

EMDB-9212: Suppressed
Method: single particle / : Suppressed X, Suppressed X, Suppressed X, Suppressed X, Suppressed X

EMDB-9231: Cryo-EM structure of membrane-bound Synaptotagmin 1 C2AB domains in a complex with the SNAREpin assembly in presence of Mg2+
Method: helical / : Grushin K, Wang J, Coleman J, Rothman J, Sindelar C, Krishnakumar S

EMDB-9243: Structure of full-length IP3R1 channel bound with Adenophostin A (composite)
Method: single particle / : Serysheva II, Fan G, Baker MR, Wang Z, Seryshev A, Ludtke SJ, Baker ML

EMDB-9253: Suppressed
Method: single particle / : Suppressed X, Suppressed X, Suppressed X, Suppressed X

EMDB-9254: Suppressed
Method: single particle / : Suppressed X, Suppressed X, Suppressed X

EMDB-9255: Suppressed
Method: single particle / : Suppressed X, Suppressed X, Suppressed X, Suppressed X

EMDB-9276: Suppressed
Method: single particle / : Suppressed X, Suppressed X

EMDB-9293: Suppressed
Method: helical / : Suppressed X, Suppressed X, Suppressed X, Suppressed X

EMDB-9296: Cryo-EM structure of the HO BMC shell: Fully asymmetric reconstruction
Method: single particle / : Greber BJ, Sutter M, Kerfeld CA

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About EMN search

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News

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Feb 20, 2018. PDBj/BINDS workshop in Osaka University

PDBj/BINDS workshop in Osaka University

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    Oct 4, 2017. Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

    Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

    • Jacques Dubochet (University of Lausanne, Switzerland) is a pioneer of ice-embedding method of EM specimen (as known as cryo-EM), Most of 3DEM structures in EMDB and PDB are obtained using his method.
    • Joachim Frank (Columbia University, New York, USA) is a pioneer of single particle reconstruction, which is the most used reconstruction method for 3DEM structures in EMDB and EM entries in PDB. And also, he is a develper of Spider, which is one of the most famous software in this field, and is used for some EM Navigor data (e.g. map projection/slice images).
    • Richard Henderson (MRC Laboratory of Molecular Biology, Cambridge, UK) was determined the first biomolecule structure by EM. The first EM entry in PDB, PDB-1brd is determinedby him.

    External links: The 2017 Nobel Prize in Chemistry - Press Release

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    Jul 12, 2017. Major update of PDB

    Major update of PDB

    • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary. This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated. See below links for details.
    • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software). Now, EM Navigator and Yorodumi are based on the updated data.

    External links: wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

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    Jun 16, 2017. Omokage search with filter

    Omokage search with filter

    • Result of Omokage search can be filtered by keywords and the database types

    Related info.: Omokage search

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    Sep 15, 2016. EM Navigator & Yorodumi renewed

    EM Navigator & Yorodumi renewed

    • New versions of EM Navigator and Yorodumi started

    Related info.: Changes in new EM Navigator and Yorodumi

    Read more

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    EMN Search

    3DEM data search

    • Advanced data search for EMDB and EM data in PDB widh various search and display options

    Related info.: EMDB / PDB / EM Navigator / Q: What is the data source of EM Navigator? / Yorodumi Search

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