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Showing all 33 items for Latest entries: new EMDB

EMDB-0011: Structure of Mycobacterium tuberculosis Fatty Acid Synthase - I
Method: single particle / : Elad N, Baron S

EMDB-0020: Hexameric cytochrome c nitrite reductase from the bacterium Thioalkalivibrio nitratireducens (TvNiR)
Method: single particle / : Baymukhametov TN, Chesnokov YM, Pichkur EB, Boyko KM, Tikhonova TV, Myasnikov AG, Vasiliev AL, Lipkin AV, Popov VO, Kovalchuk MV

EMDB-4303: Cryo-EM subtomogram average of IFT complex B and inhibited dynein-1b in anterograde IFT trains (Chlamydomonas reinhardtii)
Method: subtomogram averaging / : Pigino G, Jordan MA

EMDB-4328: Suppressed
Method: single particle / : Suppressed X, Suppressed X

EMDB-4346: Suppressed
Method: helical / : Suppressed X, Suppressed X

EMDB-4351: Suppressed
Method: single particle / : Suppressed X, Suppressed X

EMDB-4355: Chlamydomonas reinhardtii nuclear pore complex
Method: subtomogram averaging / : Mosalaganti S, Albert S, Engel BD, Beck M

EMDB-4364: Suppressed
Method: single particle / : Suppressed X, Suppressed X

EMDB-4370: Suppressed
Method: single particle / : Suppressed X, Suppressed X

EMDB-4373: Ribosome subtomogram average obtained for yeast cells treated with rapamycin
Method: subtomogram averaging / : Pfeffer S, Engel BD, Schaffer M

EMDB-4374: GEM subtomogram average obtained for control yeast cells
Method: subtomogram averaging / : Pfeffer S, Engel BD, Schaffer M

EMDB-4375: GEM subtomogram average obtained for yeast cells treated with rapamycin
Method: subtomogram averaging / : Pfeffer S, Engel BD, Schaffer M

EMDB-4376: Tomogram obtained for control yeast cells
Method: electron tomography / : Pfeffer S, Engel BD, Schaffer M

EMDB-4377: Tomogram obtained for yeast cells treated with rapamycin
Method: electron tomography / : Pfeffer S, Engel BD, Schaffer M

EMDB-4378: 50S ribosomal subunit assembly intermediate state 5
Method: single particle / : Nikolay R, Hilal T

EMDB-4379: 50S ribosomal subunit assembly intermediate state 4
Method: single particle / : Nikolay R, Hilal T

EMDB-4380: 50S ribosomal subunit assembly intermediate state 3
Method: single particle / : Nikolay R, Hilal T

EMDB-4381: 50S ribosomal subunit assembly intermediate state 2
Method: single particle / : Nikolay R, Hilal T

EMDB-4382: 50S ribosomal subunit assembly intermediate state 1
Method: single particle / : Nikolay R, Hilal T

EMDB-4383: 50S ribosomal subunit assembly intermediate - 50S rec*
Method: single particle / : Nikolay R, Hilal T

EMDB-4385: CryoEM structure of an oxidoreductase
Method: single particle / : Parey K, Vonck J

EMDB-4386: Suppressed
Method: single particle / : Suppressed X, Suppressed X

EMDB-4387: Aged P22 Empty Procapsid
Method: icosahedral / : McCoy K, Selivanovitch E, Luque D, Lee B, Edwards E, Caston JR, Douglas T

EMDB-4388: P22 Empty Wiffleball
Method: icosahedral / : McCoy K, Selivanovitch E, Luque D, Lee B, Edwards E, Caston JR, Douglas T

EMDB-4389: P22 CellB loaded Wiffleball
Method: icosahedral / : McCoy K, Selivanovitch E, Luque D, Lee B, Edwards E, Caston JR, Douglas T

EMDB-7772: Cryo-EM structure of Seneca Valley Virus-Anthrax Toxin Receptor 1 complex
Method: icosahedral / : Jayawardena N, Laura N

EMDB-7820: CryoEM structure of Tetrahymena telomerase without DNA at 6.4 Angstrom resolution
Method: single particle / : Jiang J, Wang Y, Susac L, Chan H, Basu R, Zhou ZH, Feigon J

EMDB-7824: Suppressed
Method: single particle / : Suppressed X, Suppressed X

EMDB-7874: Helical assembly of the fungal dynamin-related Vps1 in the presence of GMPPCP
Method: helical / : Alvarez FJD, Varlakhanova NV, Zhang P, Ford MGJ

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Feb 20, 2018. PDBj/BINDS workshop in Osaka University

PDBj/BINDS workshop in Osaka University

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    Oct 4, 2017. Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

    Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

    • Jacques Dubochet (University of Lausanne, Switzerland) is a pioneer of ice-embedding method of EM specimen (as known as cryo-EM), Most of 3DEM structures in EMDB and PDB are obtained using his method.
    • Joachim Frank (Columbia University, New York, USA) is a pioneer of single particle reconstruction, which is the most used reconstruction method for 3DEM structures in EMDB and EM entries in PDB. And also, he is a develper of Spider, which is one of the most famous software in this field, and is used for some EM Navigor data (e.g. map projection/slice images).
    • Richard Henderson (MRC Laboratory of Molecular Biology, Cambridge, UK) was determined the first biomolecule structure by EM. The first EM entry in PDB, PDB-1brd is determinedby him.

    External links: The 2017 Nobel Prize in Chemistry - Press Release

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    Jul 12, 2017. Major update of PDB

    Major update of PDB

    • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary. This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated. See below links for details.
    • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software). Now, EM Navigator and Yorodumi are based on the updated data.

    External links: wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

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    Omokage search with filter

    • Result of Omokage search can be filtered by keywords and the database types

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    Sep 15, 2016. EM Navigator & Yorodumi renewed

    EM Navigator & Yorodumi renewed

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