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Showing all 19 items for Latest entries: new EMDB

EMDB-3888: State A (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes
Method: single particle / : Kater L, Thoms M, Barrio-Garcia C, Cheng J, Ismail S, Ahmed YL, Bange G, Kressler D, Berninghausen O, Sinning I, Hurt E, Beckmann R

EMDB-3889: State B (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes
Method: single particle / : Kater L, Thoms M, Barrio-Garcia C, Cheng J, Ismail S, Ahmed YL, Bange G, Kressler D, Berninghausen O, Sinning I, Hurt E, Beckmann R

EMDB-3890: State D (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes
Method: single particle / : Kater L, Thoms M, Barrio-Garcia C, Cheng J, Ismail S, Ahmed YL, Bange G, Kressler D, Berninghausen O, Sinning I, Hurt E, Beckmann R

EMDB-3967: In situ cryo-electron tomogram from Chlamydomonas reinhardtii of the cellular environment around the nuclear envelope
Method: electron tomography / : Albert S, Schaffer M, Beck F, Mosalaganti S, Asano S, Thomas HF, Plitzko J, Beck M, Baumeister W, Engel BD

EMDB-3968: The in situ structure of the Chlamydomonas COPI coat: average of all data
Method: subtomogram averaging / : Bykov YS, Schaffer M, Dodonova SO, Albert S, Plitzko JM, Baumeister W, Engel BD, Briggs JAG

EMDB-3969: The in situ structure of the Chlamydomonas COPI coat: average from buds
Method: subtomogram averaging / : Bykov YS, Schaffer M, Dodonova SO, Albert S, Plitzko JM, Baumeister W, Engel BD, Briggs JAG

EMDB-3970: The in situ structure of the Chlamydomonas COPI coat: average from vesicles
Method: subtomogram averaging / : Bykov YS, Schaffer M, Dodonova SO, Albert S, Plitzko JM, Baumeister W, Engel BD, Briggs JAG

EMDB-3971: The in situ structure of the Chlamydomonas COPI coat: average from the cis-Golgi region
Method: subtomogram averaging / : Bykov YS, Schaffer M, Dodonova SO, Albert S, Plitzko JM, Baumeister W, Engel BD, Briggs JAG

EMDB-3972: The in situ structure of the Chlamydomonas COPI coat: average from the medial/trans-Golgi region
Method: subtomogram averaging / : Bykov YS, Schaffer M, Dodonova SO, Albert S, Plitzko JM, Baumeister W, Engel BD, Briggs JAG

EMDB-3973: The in situ structure of the Chlamydomonas COPI coat: average from the trans-Golgi/TGN region
Method: subtomogram averaging / : Bykov YS, Schaffer M, Dodonova SO, Albert S, Plitzko JM, Baumeister W, Engel BD, Briggs JAG

EMDB-3974: The in situ structure of the Chlamydomonas COPI coat linkage I
Method: subtomogram averaging / : Bykov YS, Schaffer M, Dodonova SO, Albert S, Plitzko JM, Baumeister W, Engel BD, Briggs JAG

EMDB-3975: The in situ structure of the Chlamydomonas COPI coat linkage II
Method: subtomogram averaging / : Bykov YS, Schaffer M, Dodonova SO, Albert S, Plitzko JM, Baumeister W, Engel BD, Briggs JAG

EMDB-3976: The in situ structure of the Chlamydomonas COPI coat linkage IV
Method: subtomogram averaging / : Bykov YS, Schaffer M, Dodonova SO, Albert S, Plitzko JM, Baumeister W, Engel BD, Briggs JAG

EMDB-3977: Cryo-electron tomogram of the Chlamydomonas reinhardtii Golgi apparatus
Method: electron tomography / : Bykov YS, Schaffer M, Dodonova SO, Albert S, Plitzko JM, Baumeister W, Engel BD, Briggs JAG

EMDB-7082: Suppressed
Method: single particle / : Suppressed X, Suppressed X

EMDB-7085: Suppressed
Method: single particle / : Suppressed X, Suppressed X

EMDB-7101: Suppressed
Method: helical / : Suppressed X, Suppressed X

EMDB-7102: TPX2_micro decorated GMPCPP-microtubule
Method: helical / : Zhang R, Nogales E

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Oct 4, 2017. Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

  • Jacques Dubochet (University of Lausanne, Switzerland) is a pioneer of ice-embedding method of EM specimen (as known as cryo-EM), Most of 3DEM structures in EMDB and PDB are obtained using his method.
  • Joachim Frank (Columbia University, New York, USA) is a pioneer of single particle reconstruction, which is the most used reconstruction method for 3DEM structures in EMDB and EM entries in PDB. And also, he is a develper of Spider, which is one of the most famous software in this field, and is used for some EM Navigor data (e.g. map projection/slice images).
  • Richard Henderson (MRC Laboratory of Molecular Biology, Cambridge, UK) was determined the first biomolecule structure by EM. The first EM entry in PDB, PDB-1brd is determinedby him.

External links: The 2017 Nobel Prize in Chemistry - Press Release

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Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary. This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated. See below links for details.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software). Now, EM Navigator and Yorodumi are based on the updated data.

External links: wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

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Omokage search with filter

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Sep 15, 2016. EM Navigator & Yorodumi renewed

EM Navigator & Yorodumi renewed

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Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

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Aug 31, 2016. New EM Navigator & Yorodumi

New EM Navigator & Yorodumi

  • In 15th Sep 2016, the development versions of EM Navigator and Yorodumi will replace the official versions.
  • Current version will continue as 'legacy version' for some time.

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator / Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

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EMN Search

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  • Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.: EMDB / PDB / EM Navigator / Q: What is the data source of EM Navigator? / Yorodumi Search

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