[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database
Q: What is the data source of EM Navigator?
Latest entriesEMDB:
PDB:
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Displayentries / page
Entry
Article
Sample
Experiment
Processing

Yorodumi Search

-
Search result

Showing all 20 items for Latest entries: new map

EMDB-3779:
Cryo-electron tomography averaged map of microtubule doublet from p23 mutant Chlamydomonas axoneme
Method: subtomogram averaging / : Sale WS, Ishikawa T, Yamamoto R, Obbineni JM, Alford LM, Hwang J, Ide T, Owa M, Kon T, Inaba K, Noliyanda J, King SM, Dutcher S

EMDB-3856:
Inside-out FMDV A10 capsid
Method: icosahedral / : Kotecha A, Malik N

EMDB-3862:
FMDV A10 dissociated pentamer
Method: single particle / : Kotecha A, Malik N

EMDB-7000:
Subtomogram average of microtubule-bound dynein-dynactin-BICD2N complex
Method: subtomogram averaging / : Grotjahn DA, Chowdhury S, Xu Y, McKenney RJ, Schroer TA, Lander GC

EMDB-7001:
Subtomogram average of two dynein tail domains bound to dynactin-Hook3 complex
Method: subtomogram averaging / : Grotjahn DA, Chowdhury S, Xu Y, McKenney RJ, Schroer TA, Lander GC

EMDB-8465:
3D cryo-EM reconstruction of MsbA-nanodisc with ADP
Method: single particle / : Mi W, Walz T, Liao M

EMDB-8467:
Cryo-EM structure of MsbA-nanodisc with ADP-vanadate
Method: single particle / : Mi W, Walz T

EMDB-8469:
3D cryo-EM reconstruction of nucleotide-free MsbA in lipid nanodisc
Method: single particle / : Mi W, Walz T

EMDB-8641:
Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog
Method: single particle / : Chang JY, Cui Z, Duan L, Huwe C, Jakana J, Li X, Meng R, Sacchettini J, Thongchol J, Yang K, Zhang J

EMDB-8645:
Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin
Method: single particle / : Yang K, Chang JY

EMDB-8646:
Locally-refined cryo-EM structure of the small ribosomal subunit from Mycobacterium tuberculosis
Method: single particle / : Yang K, Chang JY, Cui Z, Zhang J

EMDB-8647:
Cryo-EM structure of the 70S ribosome from Mycobacterium smegmatis
Method: single particle / : Yang K, Chang JY, Cui Z, Zhang J

EMDB-8648:
Focused classification of the 70S ribosome from Mycobacterium tuberculosis
Method: single particle / : Yang K, Chang JY, Cui Z, Zhang J

EMDB-8649:
Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis at 1 mM magnesium concentration
Method: single particle / : Yang K, Chang JY, Cui Z, Zhang J

EMDB-8669:
CryoEM map of MsbA in POPG nanodisc
Method: single particle / : Mi W, Walz T, Liao M

EMDB-8670:
CryoEM map of MsbA with lipid A in POPG nanodisc
Method: single particle / : Mi W, Walz T, Liao M

EMDB-8671:
CryoEM map of MsbA in POPC nanodisc
Method: single particle / : Mi W, Walz T, Liao M

EMDB-8830:
Structural and functional impacts of ER coactivator sequential recruitment
Method: single particle / : Yi P, Wang Z, Feng Q, Chou CK, Pintilie G, Shen H, Foulds CE, Fan GZ, Serysheva I, Ludtke S, Schmid MF, Hung MC, Chiu W, OMalley BW

EMDB-8831:
Structural and functional impacts of ER coactivator sequential recruitment
Method: single particle / : Yi P, Wang Z, Feng Q, Chou CK, Pintilie G, Shen H, Foulds CE, Fan GZ, Serysheva I, Ludtke S, Schmid MF, Hung MC, Chiu W, OMalley BW

EMDB-8832:
Structural and functional impacts of ER coactivator sequential recruitment
Method: single particle / : Yi P, Wang Z, Feng Q, Chou CK, Pintilie G, Shen H, Foulds CE, Fan GZ, Serysheva I, Ludtke S, Schmid MF, Hung MC, Chiu W, OMalley BW

+
About EMN search

-
News

-
Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary. This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated. See below links for details.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software). Now, EM Navigator and Yorodumi are based on the updated data.

External links: wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

-
Jun 16, 2017. Omokage search with filter

Omokage search with filter

  • Result of Omokage search can be filtered by keywords and the database types

Related info.: Omokage search

+
Sep 15, 2016. EM Navigator & Yorodumi renewed

EM Navigator & Yorodumi renewed

  • New versions of EM Navigator and Yorodumi started

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

+
Aug 31, 2016. New EM Navigator & Yorodumi

New EM Navigator & Yorodumi

  • In 15th Sep 2016, the development versions of EM Navigator and Yorodumi will replace the official versions.
  • Current version will continue as 'legacy version' for some time.

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator / Yorodumi / EM Navigator (legacy version) / Yorodumi (legacy version)

+
Apr 13, 2016. Omokage search got faster

Omokage search got faster

  • The computation time became ~1/2 compared to the previous version by re-optimization of data accession
  • Enjoy "shape similarity" of biomolecules, more!

Related info.: Omokage search

Read more

-
EMN Search

3DEM data search

  • Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.: EMDB / PDB / EM Navigator / Q: What is the data source of EM Navigator? / Yorodumi Search

Read more