[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 44 items for (author: zila & v)

EMDB-40557:
Cryo-EM structure of designed Influenza HA binder, HA_20, bound to Influenza HA (Strain: Iowa43)
Method: single particle / : Borst AJ, Bennett NR

PDB-8sk7:
Cryo-EM structure of designed Influenza HA binder, HA_20, bound to Influenza HA (Strain: Iowa43)
Method: single particle / : Borst AJ, Bennett NR

EMDB-24937:
44SR3C ribosomal particle
Method: single particle / : Ortega J, Seffouh A

EMDB-24940:
44SR3C ribosomal particle class 2
Method: single particle / : Ortega J, Seffouh A

EMDB-24950:
44SR70P Class1 ribosomal particle
Method: single particle / : Ortega J, Seffouh A

EMDB-24951:
44SR70P Class2 ribosomal particle
Method: single particle / : Ortega J, Seffouh A

EMDB-24960:
The RbgA treated 44SR3C particles_Class1
Method: single particle / : Ortega J, Seffouh A

EMDB-24962:
The RbgA treated 44SR3C particles _Class2
Method: single particle / : Ortega J, Seffouh A

EMDB-24965:
The 44SR70P particles incubated at 37C for 15 min Class1
Method: single particle / : Ortega J, Seffouh A

EMDB-24966:
The 44SR70P particles incubated at 37C for 15 min Class2
Method: single particle / : Ortega J, Seffouh A

EMDB-24967:
The 44SR70P particles incubated at 37C for 15 min Class3
Method: single particle / : Ortega J, Seffouh A

EMDB-24971:
The RbgA treated 44SR70P particles Class1
Method: single particle / : Ortega J, Seffouh A

EMDB-24972:
The RbgA treated 44SR70P particles Class2
Method: single particle / : Ortega J, Seffouh A

EMDB-24973:
The RbgA treated 44SR70P particles Class3
Method: single particle / : Ortega J, Seffouh A

EMDB-24975:
The RbgA treated 44SR70P particles Class4
Method: single particle / : Ortega J, Seffouh A

EMDB-24977:
The 45SRbgA particles incubated at 37C for 15 min Class1
Method: single particle / : Ortega J, Seffouh A

EMDB-24979:
The 45SRbgA particles incubated at 37C for 15 min Class2
Method: single particle / : Ortega J, Seffouh A

EMDB-24980:
The 70SR70P ribosomes
Method: single particle / : Ortega J, Seffouh A

PDB-7s9u:
44SR3C ribosomal particle
Method: single particle / : Ortega J, Seffouh A

PDB-7sae:
44SR70P Class1 ribosomal particle
Method: single particle / : Ortega J, Seffouh A

EMDB-13085:
Representative cryo-electron tomogram of immature HIV-1 particles
Method: electron tomography / : Qu K, Ke ZL, Zila V, Anders-Oesswein M, Glass B, Muecksch F, Mueller R, Schultz C, Mueller B, Kraeusslich HG, Briggs JAG

EMDB-13086:
Representative cryo-electron tomogram of mature HIV-1 particles
Method: electron tomography / : Qu K, Ke ZL, Zila V, Anders-Oesswein M, Glass B, Muecksch F, Mueller R, Schultz C, Mueller B, Kraeusslich HG, Briggs JAG

EMDB-13087:
Immature HIV-1 matrix structure
Method: subtomogram averaging / : Qu K, Ke ZL, Zila V, Anders-Oesswein M, Glass B, Muecksch F, Mueller R, Schultz C, Mueller B, Kraeusslich HG, Briggs JAG

EMDB-13088:
Mature HIV-1 matrix structure
Method: subtomogram averaging / : Qu K, Ke ZL, Zila V, Anders-Oesswein M, Glass B, Muecksch F, Mueller R, Schultz C, Mueller B, Kraeusslich HG, Briggs JAG

PDB-7ovq:
Immature HIV-1 matrix structure
Method: subtomogram averaging / : Qu K, Ke ZL, Zila V, Anders-Oesswein M, Glass B, Muecksch F, Mueller R, Schultz C, Mueller B, Kraeusslich HG, Briggs JAG

PDB-7ovr:
Mature HIV-1 matrix structure
Method: subtomogram averaging / : Qu K, Ke ZL, Zila V, Anders-Oesswein M, Glass B, Muecksch F, Mueller R, Schultz C, Mueller B, Kraeusslich HG, Briggs JAG

EMDB-11967:
Human nuclear pore complex in HIV-1 infected T cells
Method: subtomogram averaging / : Margiotta E, Beck M

EMDB-21850:
F. tularensis RNAPs70-iglA DNA complex
Method: single particle / : Travis BA, Brennan RG

EMDB-21851:
F. tularensis RNAPs70-(MglA-SspA)-iglA DNA complex
Method: single particle / : Travis BA, Brennan RG

EMDB-21852:
F. tularensis RNAPs70-(MglA-SspA)-ppGpp-PigR-iglA DNA complex
Method: single particle / : Travis BA, Brennan RG

EMDB-21853:
E. coli RNAPs70-SspA-gadA DNA complex
Method: single particle / : Travis BA, Brennan RG

PDB-6wmp:
F. tularensis RNAPs70-iglA DNA complex
Method: single particle / : Travis BA, Brennan RG, Schumacher MA

PDB-6wmr:
F. tularensis RNAPs70-(MglA-SspA)-iglA DNA complex
Method: single particle / : Travis BA, Brennan RG, Schumacher MA

PDB-6wmt:
F. tularensis RNAPs70-(MglA-SspA)-ppGpp-PigR-iglA DNA complex
Method: single particle / : Travis BA, Brennan RG, Schumacher MA

PDB-6wmu:
E. coli RNAPs70-SspA-gadA DNA complex
Method: single particle / : Travis BA, Brennan RG, Schumacher MA

EMDB-11493:
Subtomogram averaging of SARS-CoV-2 Spike Protein from unconcentrated virions: consensus structure of prefusion S trimers
Method: subtomogram averaging / : Ke Z, Oton J, Zivanov J, Lu JM, Peukes J, Cortese M, Zila V, Scheres SHW, Briggs JAG

EMDB-11494:
Subtomogram averaging of SARS-CoV-2 spike protein from unconcentrated virions: Prefusion Class (3 closed RBDs)
Method: subtomogram averaging / : Ke Z, Oton J, Zivanov J, Lu JM, Peukes J, Cortese M, Zila V, Scheres SHW, Briggs JAG

EMDB-11495:
Subtomogram averaging of SARS-CoV-2 spike protein from unconcentrated virions: Prefusion Class (1 open RBD)
Method: subtomogram averaging / : Ke Z, Oton J, Zivanov J, Lu JM, Peukes J, Cortese M, Zila V, Scheres SHW, Briggs JAG

EMDB-11496:
Subtomogram averaging of SARS-CoV-2 spike protein from unconcentrated virions: Prefusion Class (2 open RBDs)
Method: subtomogram averaging / : Ke Z, Oton J, Zivanov J, Lu JM, Peukes J, Cortese M, Zila V, Scheres SHW, Briggs JAG

EMDB-11497:
Cryo-EM structure of SARS-CoV-2 Spike Proteins on intact virions: 3 Closed RBDs
Method: single particle / : Ke Z, Qu K, Nakane T, Xiong X, Cortese M, Zila V, Scheres SHW, Briggs JAG

EMDB-11498:
Cryo-EM structure of SARS-CoV-2 Spike Proteins on intact virions: 2 Closed + 1 Weak RBDs
Method: single particle / : Ke Z, Qu K, Nakane T, Xiong X, Cortese M, Zila V, Scheres SHW, Briggs JAG

PDB-6zwv:
Cryo-EM structure of SARS-CoV-2 Spike Proteins on intact virions: 3 Closed RBDs
Method: single particle / : Ke Z, Qu K, Nakane T, Xiong X, Cortese M, Zila V, Scheres SHW, Briggs JAG

EMDB-5134:
TBP-containing S. pombe TFIID
Method: single particle / : Elmlund H, Baraznenok V, Linder T, Szilagyi Z, Rofougaran R, Hofer A, Hebert H, Lindahl M, Gustafsson CM

EMDB-5135:
TBP-lacking S. pombe TFIID
Method: single particle / : Elmlund H, Baraznenok V, Linder T, Szilagyi Z, Rofougaran R, Hofer A, Hebert H, Lindahl M, Gustafsson CM

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more