[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 5,498 items for (author: zhu & c)

EMDB-66342:
Cryo-EM structure of reduced form of formatedehydrogenase from Rhodobacter aestuarii (RaFDH) with NADH
Method: single particle / : Zhang K, Zhang L

PDB-9wxb:
Cryo-EM structure of reduced form of formatedehydrogenase from Rhodobacter aestuarii (RaFDH) with NADH
Method: single particle / : Zhang K, Zhang L

EMDB-65508:
Cryo-EM structure of S1P2 in complex with heterotrimeric G protein
Method: single particle / : Wu B, Zhao Q, Tan Q

EMDB-65510:
cryoEM structure of S1P3 in complex with heterotrimeric G protein
Method: single particle / : Wu B, Zhao Q, Tan Q

PDB-9w0m:
Cryo-EM structure of S1P2 in complex with heterotrimeric G protein
Method: single particle / : Wu B, Zhao Q, Tan Q

PDB-9w0o:
cryoEM structure of S1P3 in complex with heterotrimeric G protein
Method: single particle / : Wu B, Zhao Q, Tan Q

EMDB-69467:
SARS-CoV-2 polymerase with incorporated and pre-incorporated AT-9052-Sp
Method: single particle / : Zhu YX, Shi H, Wang MF

EMDB-80744:
Cryo-EM structure of human LAS1L-NOL9 complex
Method: single particle / : Zhu J, Li Y, Cheng J

PDB-26lk:
Cryo-EM structure of human LAS1L-NOL9 complex
Method: single particle / : Zhu J, Li Y, Cheng J

EMDB-67871:
DRT4 homohexamer
Method: single particle / : Xiao J, Wang L

EMDB-67946:
DRT4 homohexamer with dGTPaS
Method: single particle / : Xiao J, Wang L

EMDB-67947:
DRT4 homohexamer with dATP
Method: single particle / : Xiao J, Wang L

EMDB-67950:
DRT4 homohexamer with dATP, dGTPaS, SSB, RNA
Method: single particle / : Xiao J, Wang L

EMDB-68056:
DRT4 homohexamer with dATP, SSB
Method: single particle / : Xiao J, Wang L

EMDB-69681:
DRT4 homohexamer with dGTP
Method: single particle / : Wang L, Li J

EMDB-69682:
DRT4 homohexamer with dGTP, GMP
Method: single particle / : Wang L, Li J

EMDB-69683:
DRT4 homohexamer with dGTP, RNA
Method: single particle / : Wang L, Li J

EMDB-69684:
DRT4 homohexamer with dGTP, ssRNA (local refinement)
Method: single particle / : Wang L, Li J

PDB-21ou:
DRT4 homohexamer
Method: single particle / : Xiao J, Wang L

PDB-21ro:
DRT4 homohexamer with dGTPaS
Method: single particle / : Xiao J, Wang L

PDB-21rp:
DRT4 homohexamer with dATP
Method: single particle / : Xiao J, Wang L

PDB-21rs:
DRT4 homohexamer with dATP, dGTPaS, SSB, RNA
Method: single particle / : Xiao J, Wang L

PDB-21wo:
DRT4 homohexamer with dATP, SSB
Method: single particle / : Xiao J, Wang L

PDB-24na:
DRT4 homohexamer with dGTP
Method: single particle / : Wang L, Li J

PDB-24nb:
DRT4 homohexamer with dGTP, GMP
Method: single particle / : Wang L, Li J

PDB-24nc:
DRT4 homohexamer with dGTP, RNA
Method: single particle / : Wang L, Li J

PDB-24nd:
DRT4 homohexamer with dGTP, ssRNA (local refinement)
Method: single particle / : Wang L, Li J

EMDB-70500:
Cryo-EM structure of bovine phosphodiesterase 6 bound to CB-5083
Method: single particle / : Crawford J, Munuganti R, Leung C, Singh K, Gates E, Zhu X, Bally M, Dos Santos N, Sharifiaghdam M, Nosrati Z, Axerio-Cilies P, Berezuk A, Cholak S, Cameron D, Subramaniam S

EMDB-70501:
Cryo-EM structure of human p97/VCP bound to inhibitor GND-135
Method: single particle / : Crawford J, Munuganti R, Leung C, Singh K, Gates E, Zhu X, Bally M, Dos Santos N, Sharifiaghdam M, Nosrati Z, Axerio-Cilies P, Berezuk A, Cholak S, Cameron D, Subramaniam S

PDB-9ohm:
Cryo-EM structure of bovine phosphodiesterase 6 bound to CB-5083
Method: single particle / : Crawford J, Munuganti R, Leung C, Singh K, Gates E, Zhu X, Bally M, Dos Santos N, Sharifiaghdam M, Nosrati Z, Axerio-Cilies P, Berezuk A, Cholak S, Cameron D, Subramaniam S

PDB-9ohn:
Cryo-EM structure of human p97/VCP bound to inhibitor GND-135
Method: single particle / : Crawford J, Munuganti R, Leung C, Singh K, Gates E, Zhu X, Bally M, Dos Santos N, Sharifiaghdam M, Nosrati Z, Axerio-Cilies P, Berezuk A, Cholak S, Cameron D, Subramaniam S

EMDB-67623:
Cryo-EM structure of DddT in closed substrate-free conformation
Method: single particle / : Zhu WJ, Wang P

EMDB-67625:
Cryo-EM structure of DddT G101D in substrate-free outward open conformation
Method: single particle / : Zhu WJ, Wang P

EMDB-67626:
Cryo-EM structure of DddT in closed DMSP-bound conformation
Method: single particle / : Zhu WJ, Wang P

EMDB-67627:
Cryo-EM structure of DddT in closed substrate-free conformation in the presence of potassium ions and dimethylsulfoniopropionate
Method: single particle / : Zhu WJ, Wang P

EMDB-67628:
Cryo-EM structure of DddT G101D in substrate-free inward open conformation
Method: single particle / : Zhu WJ, Wang P

PDB-21ff:
Cryo-EM structure of DddT in closed substrate-free conformation
Method: single particle / : Zhu WJ, Wang P

PDB-21fh:
Cryo-EM structure of DddT G101D in substrate-free outward open conformation
Method: single particle / : Zhu WJ, Wang P

PDB-21fi:
Cryo-EM structure of DddT in closed DMSP-bound conformation
Method: single particle / : Zhu WJ, Wang P

PDB-21fj:
Cryo-EM structure of DddT in closed substrate-free conformation in the presence of potassium ions and dimethylsulfoniopropionate
Method: single particle / : Zhu WJ, Wang P

PDB-21fk:
Cryo-EM structure of DddT G101D in substrate-free inward open conformation
Method: single particle / : Zhu WJ, Wang P

EMDB-65528:
Composite map of the type III CRISPR-associated deaminase in complex cA6 and ATP, State 1
Method: single particle / : Li ZX, Kong JP, Wu WQ

EMDB-65529:
Consensus map of the type III CRISPR-associated deaminase in complex cA6 and ATP, State 1
Method: single particle / : Li ZX, Kong JP, Wu WQ, Xiao YB

EMDB-65530:
Focused map of area 1 of the type III CRISPR-associated deaminase in complex cA6 and ATP, State 1
Method: single particle / : Li ZX, Kong JP, Wu WQ, Xiao YB

EMDB-65531:
Focused map of area 2 of the type III CRISPR-associated deaminase in complex cA6 and ATP, State 1
Method: single particle / : Li ZX, Kong JP, Wu WQ, Xiao YB

EMDB-65532:
Composite map of the type III CRISPR-associated deaminase in complex cA6 and ATP, State 2
Method: single particle / : Li ZX, Kong JP, Wu WQ

EMDB-65533:
Consensus map of the type III CRISPR-associated deaminase in complex cA6 and ATP, State 2
Method: single particle / : LI ZX, Kong JP, Wu WQ

EMDB-65534:
Focused map of area 1 of the type III CRISPR-associated deaminase in complex cA6 and ATP, State 2
Method: single particle / : Li ZX, Kong JP, Wu WQ

EMDB-65535:
Focused map of area 2 of the type III CRISPR-associated deaminase in complex cA6 and ATP, State 2
Method: single particle / : Li ZX, Kong JP, Wu WQ

EMDB-65536:
Composite map of the type III CRISPR-associated deaminase in complex cA6 and ATP, State 3
Method: single particle / : Li ZX, Kong JP, Wu WQ

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more