[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 122 items for (author: zhou & xe)

EMDB-47344:
Cryo-EM structure of human DNMT3A2-DNMT3B3 complex bound to di-nucleosome
Method: single particle / : Xie X, Zhou XE, Worden EJ, Jones PA

EMDB-71604:
Consensus map for Cryo-EM structure of DNMT3A2/3B3 in complex with H3K36me2 di-nucleosome with eight-base-pair linker
Method: single particle / : Xie X, Zhou XE, Worden EJ, Jones PA

EMDB-71606:
Focus map of DNMT3A2/3B3 tetramer2 for Cryo-EM structure of DNMT3A2/3B3 in complex with H3K36me2 di-nucleosome with eight base pair linker
Method: single particle / : Xie X, Zhou XE, Worden EJ, Jones PA

EMDB-71607:
Focus map of nucleosome 1 for Cryo-EM structure of DNMT3A2/3B3 in complex with H3K36me2 di-nucleosome with eight base pair linker
Method: single particle / : Xie X, Zhou XE, Worden EJ, Jones PA

EMDB-71608:
Focus map of nucleosome 2 for Cryo-EM structure of DNMT3A2/3B3 in complex with H3K36me2 di-nucleosome with eight base pair linker
Method: single particle / : Xie X, Zhou XE, Worden EJ, Jones PA

EMDB-71609:
Focus map of nucleosome1_PWWP1 for Cryo-EM structure of DNMT3A2/3B3 in complex with H3K36me2 di-nucleosome with eight base pair linker
Method: single particle / : Xie X, Zhou XE, Worden EJ, Jones PA

EMDB-47448:
Cryo-EM structure of human DNMT3A2-DNMT3B3 complex bound to a di-nucleosome with a five base pair linker
Method: single particle / : Xie X, Liu M, Zhou XE, Worden E, Jones P

EMDB-47450:
Cryo-EM structure of a di-nucleosome with a five base pair linker
Method: single particle / : Xie X, Liu M, Zhou XE, Worden E, Jones P

EMDB-47461:
Cryo-EM structure of DNMT 3A2/3B3 tetramer in complex with a di-nucleosome with a six base pair linker
Method: single particle / : Xie X, Liu M, Zhou XE, Worden E, Jones P

EMDB-47462:
Cryo-EM structure of human DNMT3A2-DNMT3B3 complex bound to a di-nucleosome and an histone-3 peptide
Method: single particle / : Xie X, Liu M, Zhou XE, Worden E, Jones P

EMDB-47479:
Cryo-EM structure of DNMT 3A2/3B3 tetramer in complex with a di-nucleosome with K120R mutant H2B
Method: single particle / : Xie X, Liu M, Zhou XE, Worden E, Jones P

EMDB-47495:
Cryo-EM structure of PWWP domain deleted DNMT 3A2/3B3 in complex with a di-nucleosome
Method: single particle / : Xie X, Liu M, Zhou XE, Worden E, Jones P

EMDB-47499:
Cryo-EM structure of a di-nucleosome with an eight base-pair linker
Method: single particle / : Xie X, Liu M, Zhou XE, Worden E, Jones P

EMDB-71301:
Consensus map for Cryo-EM structure of DNMT3A2/3B3 tetramer in complex with a 167H3K36me2 nucleosome
Method: single particle / : Xie X, Liu M, Zhou XE, Worden E, Jones P

EMDB-47349:
The consensus model of the cryo-EM structure of human DNMT3A2-DNMT3B3 complex bound to di-nucleosome
Method: single particle / : Xie X, Zhou XE, Worden EJ, Jones PA

EMDB-47353:
Cryo-EM structure a single nucleosome (2) focus of human DNMT3A2-DNMT3B3 complex bound to di-nucleosome
Method: single particle / : Xie X, Zhou XE, Worden EJ, Jones PA

EMDB-47354:
A focus of DNMT tetramer (1) of the cryo-EM structure of human DNMT3A2-DNMT3B3 complex bound to di-nucleosome
Method: single particle / : Xie X, Zhou XE, Worden EJ, Jones PA

EMDB-47355:
A focus of tetramer (2) of the cryo-EM structure of human DNMT3A2-DNMT3B3 complex bound to di-nucleosome
Method: single particle / : Xie X, Zhou XE, Worden EJ, Jones PA

EMDB-47367:
Cryo-EM structure of a single nucleosome (1) focus of human DNMT3A2-DNMT3B3 complex bound to di-nucleosome
Method: single particle / : Xie X, Zhou XE, Worden EJ, Jones PA

EMDB-71302:
Focus map of DNMT3A2/3B3 tetramer for Cryo-EM structure of DNMT3A2/3B3 in complex with 167H3K36me2-nucleosome
Method: single particle / : Xie X, Zhou XE, Worden EJ, Jones PA

EMDB-71304:
Focus map of PWWP_1 domain for Cryo-EM structure of DNMT3A2/3B3 in complex with 167H3K36me2-nucleosome
Method: single particle / : Xie X, Zhou XE, Worden EJ, Jones PA

EMDB-71305:
Focus map of PWWP_2 for Cryo-EM structure of DNMT3A2/3B3 in complex with 167H3K36me2-nucleosome
Method: single particle / : Xie X, Zhou XE, Worden EJ, Jones PA

EMDB-71306:
Focus map of nucleosome for Cryo-EM structure of DNMT3A2/3B3 in complex with 167H3K36me2-nucleosome
Method: single particle / : Xie X, Zhou XE, Worden EJ, Jones PA

EMDB-71605:
Focus map of DNMT3A2/3B3 tetramer1 for Cryo-EM structure of DNMT3A2/3B3 in complex with H3K36me2 di-nucleosome with eight base pair linker
Method: single particle / : Xie X, Zhou XE, Worden EJ, Jones PA

EMDB-72318:
Composite map for Cryo-EM structure of DNMT3A2-DNMT3B3 tetramer bound to 167H3K36me2-nucleosome
Method: single particle / : Xie X, Zhou XE, Worden EJ, Jones PA

EMDB-72487:
Cryo-EM structure of DNMT3A2/3B3 in complex with H3K36me2 di-nucleosome with eight base pair linker
Method: single particle / : Xie X, Zhou XE, Worden EJ, Jones PA

EMDB-47496:
Cryo-EM structure of DNMT 3A2/3B3 tetramer bound to a di-nucleosome with a 25 base-pair linker
Method: single particle / : Xie X, Zhou XE, Worden E, Jones P

EMDB-48548:
SARS-CoV-2 S2 monomer in complex with R125-61 Fab
Method: single particle / : Park S, Bangaru B, Ward AB

EMDB-48549:
SARS-CoV-2 S2 monomer in complex with NICA01B-1113 Fab
Method: single particle / : Park S, Bangaru B, Ward AB

EMDB-48550:
SARS-CoV-2 S2 monomer in complex with NICA01A-1401 Fab
Method: single particle / : Park S, Bangaru B, Ward AB

PDB-9mr1:
SARS-CoV-2 S2 monomer in complex with R125-61 Fab
Method: single particle / : Park S, Bangaru B, Ward AB

PDB-9mr2:
SARS-CoV-2 S2 monomer in complex with NICA01A-1401 Fab
Method: single particle / : Park S, Bangaru B, Ward AB

EMDB-48322:
The consensus cryo-EM map of nucleosome-bound DNA methyltransferases DNMT3A2 and DNMT3L
Method: single particle / : Yan Y, Zhou XE, Xu TH

EMDB-48492:
The methyltransferases-focused cryo-EM map of nucleosome-bound DNA methyltransferases DNMT3A2 and DNMT3L
Method: single particle / : Yan Y, Zhou XE, Xu TH

EMDB-48493:
The nucleosome-focused cryo-EM map of nucleosome-bound DNA methyltransferases DNMT3A2 and DNMT3L
Method: single particle / : Yan Y, Zhou XE, Xu TH

EMDB-48494:
The "up" state cryo-EM map of nucleosome-bound DNA methyltransferases DNMT3A2 and DNMT3L
Method: single particle / : Yan Y, Zhou XE, Xu TH

EMDB-48495:
The intermediate state cryo-EM map of nucleosome-bound DNA methyltransferases DNMT3A2 and DNMT3L
Method: single particle / : Yan Y, Zhou XE, Xu TH

EMDB-48496:
The cryo-EM structure of the human DNA methyltransferases DNMT3A2 and DNMT3L dodecamer
Method: single particle / : Yan Y, Zhou XE, Xu TH

EMDB-48497:
The cryo-EM structure of the human DNA methyltransferase DNMT3A2 and DNMT3L octamer
Method: single particle / : Yan Y, Zhou XE, Xu TH

EMDB-48498:
The cryo-EM structure of nucleosome-bound DNA methyltransferases DNMT3A2 and DNMT3L
Method: single particle / : Yan Y, Zhou XE, Xu TH

EMDB-29530:
SARS-CoV-2 XBB.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-29531:
SARS-CoV-2 BQ.1.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-40240:
SARS-CoV-2 BN.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8fxb:
SARS-CoV-2 XBB.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8fxc:
SARS-CoV-2 BQ.1.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8s9g:
SARS-CoV-2 BN.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-40983:
Negative stain EM assembly of MYC, JAZ, and NINJA complex
Method: single particle / : Zhou XE, Zhang Y, Zhou Y, He Q, Cao X, Kariapper L, Suino-Powell K, Zhu Y, Zhang F, Karsten M

EMDB-28907:
Gi bound mu-opioid receptor in complex with beta-endorphin
Method: single particle / : Wang Y, Zhuang Y, DiBerto JF, Zhou XE, Schmitz GP, Yuan Q, Jain MK, Liu W, Melcher K, Jiang Y, Roth BL, Xu HE

EMDB-28908:
Gi bound mu-opioid receptor in complex with endomorphin
Method: single particle / : Wang Y, Zhuang Y, DiBerto JF, Zhou XE, Schmitz GP, Yuan Q, Jain MK, Liu W, Melcher K, Jiang Y, Roth BL, Xu HE

EMDB-28909:
Gi bound delta-opioid receptor in complex with deltorphin
Method: single particle / : Wang Y, Zhuang Y, DiBerto JF, Zhou XE, Schmitz GP, Yuan Q, Jain MK, Liu W, Melcher K, Jiang Y, Roth BL, Xu HE

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more