[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 90 items for (author: zheng & rb)

EMDB-75897:
Evaluating the Volta Phase Plate for Improved Tomogram Alignment in Cryo-Electron Tomography: structure of 80S ribosome with VPP (full dataset)
Method: subtomogram averaging / : Hutchings J, Ji D, Ali M, Siems H, Serwas D, Paraan M, Montabana EA, Yu Y

EMDB-75900:
Evaluating the Volta Phase Plate for Improved Tomogram Alignment in Cryo-Electron Tomography: structure of 70S ribosome with VPP (full dataset)
Method: subtomogram averaging / : Hutchings J, Ji D, Ali M, Paraan M, Montabana EA, Yu Y

EMDB-75890:
Evaluating the Volta Phase Plate for Improved Tomogram Alignment in Cryo-Electron Tomography: structure of PP7 virus-like-particle with VPP (partial dataset)
Method: subtomogram averaging / : Hutchings J, Ji D, Ali M, Siems H, Serwas D, Paraan M, Montabana EA, Yu Y

EMDB-75895:
Evaluating the Volta Phase Plate for Improved Tomogram Alignment in Cryo-Electron Tomography: structure of 80S ribosome without VPP (full dataset)
Method: subtomogram averaging / : Hutchings J, Ji D, Ali M, Siems H, Serwas D, Paraan M, Montabana EA, Yu Y

EMDB-75896:
Evaluating the Volta Phase Plate for Improved Tomogram Alignment in Cryo-Electron Tomography: structure of 80S ribosome without VPP (partial dataset)
Method: subtomogram averaging / : Hutchings J, Ji D, Ali M, Siems H, Serwas D, Paraan M, Montabana EA, Yu Y

EMDB-75898:
Evaluating the Volta Phase Plate for Improved Tomogram Alignment in Cryo-Electron Tomography: structure of 70S ribosome without VPP (full dataset)
Method: subtomogram averaging / : Hutchings J, Ji D, Ali M, Paraan M, Montabana EA, Yu Y

EMDB-75899:
Evaluating the Volta Phase Plate for Improved Tomogram Alignment in Cryo-Electron Tomography: structure of 70S ribosome without VPP (partial dataset)
Method: subtomogram averaging / : Hutchings J, Ji D, Ali M, Paraan M, Montabana EA, Yu Y

EMDB-66181:
Cryo-EM structure of LH1-RC from Rhodovulum sulfidophilum
Method: single particle / : Yue XY, Wang GL, Yu LJ

PDB-9wqv:
Cryo-EM structure of LH1-RC from Rhodovulum sulfidophilum
Method: single particle / : Yue XY, Wang GL, Yu LJ

EMDB-72469:
Structure of naked mole-rat ribosome with P/E tRNA and eEF2 (rotated)
Method: single particle / : Gutierrez-Vargas C, De S, Maji S, Liu Z, Nieb M, Seluanov A, Gorbunova V, Frank J

EMDB-72470:
Structure of naked mole-rat ribosome (rotated, tRNAs, and mRNA)
Method: single particle / : Gutierrez-Vargas C, De S, Maji S, Liu Z, Nieb M, Seluanov A, Gorbunova V, Frank J

EMDB-72475:
Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)
Method: single particle / : Gutierrez-Vargas C, De S, Maji S, Liu Z, Nieb M, Seluanov A, Gorbunova V, Frank J

EMDB-72482:
Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)
Method: single particle / : Gutierrez-Vargas C, De S, Maji S, Liu Z, Nieb M, Seluanov A, Gorbunova V, Frank J

EMDB-72483:
Structure of guinea pig ribosome with P/E-tRNA and mRNA
Method: single particle / : Gutierrez-Vargas C, De S, Maji S, Liu Z, Nieb M, Seluanov A, Gorbunova V, Frank J

EMDB-74615:
Structure of naked mole-rat ribosome (non-rotated)
Method: single particle / : Gutierrez-Vargas C, De S, Maji S, Liu Z, Nieb M, Seluanov A, Gorbunova V, Frank J

PDB-9y42:
Structure of naked mole-rat ribosome with P/E tRNA and eEF2 (rotated)
Method: single particle / : Gutierrez-Vargas C, De S, Maji S, Liu Z, Nieb M, Seluanov A, Gorbunova V, Frank J

PDB-9y44:
Structure of naked mole-rat ribosome (rotated, tRNAs, and mRNA)
Method: single particle / : Gutierrez-Vargas C, De S, Maji S, Liu Z, Nieb M, Seluanov A, Gorbunova V, Frank J

PDB-9y49:
Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)
Method: single particle / : Gutierrez-Vargas C, De S, Maji S, Liu Z, Nieb M, Seluanov A, Gorbunova V, Frank J

PDB-9y4g:
Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)
Method: single particle / : Gutierrez-Vargas C, De S, Maji S, Liu Z, Nieb M, Seluanov A, Gorbunova V, Frank J

PDB-9y4h:
Structure of guinea pig ribosome with P/E-tRNA and mRNA
Method: single particle / : Gutierrez-Vargas C, De S, Maji S, Liu Z, Nieb M, Seluanov A, Gorbunova V, Frank J

PDB-9zrg:
Structure of naked mole-rat ribosome (non-rotated)
Method: single particle / : Gutierrez-Vargas C, De S, Maji S, Liu Z, Nieb M, Seluanov A, Gorbunova V, Frank J

EMDB-75263:
Apoferritin single-particle cryo-EM reconstruction using a Volta phase plate
Method: single particle / : Yu Y, Montabana L

EMDB-75265:
Apoferritin single-particle cryo-EM reconstruction under matched conditions without a phase plate
Method: single particle / : Yu Y, Montabana L

EMDB-63714:
Structure of photosynthetic LH1-RC complex the Halophilic Nonsulfur Purple Bacterium, Rhodothalassium salexigens
Method: single particle / : Tani K, Kanno R, Inami M, Ooya T, Matsushita R, Minamino A, Takenaka S, Takaichi S, Purba ER, Hall M, Mochizuki T, Yu LJ, Mizoguchi A, Humbel BM, Madigan MT, Kimura Y, Wang-Otomo ZY

EMDB-64946:
Map including micelle density from the photosynthetic LH1-RC complex of the halophilic nonsulfur purple bacterium Rhodothalassium salexigens
Method: single particle / : Tani K, Kanno R, Inami M, Ooya T, Matsushita R, Inada K, Takenaka S, Takaichi S, Purba ER, Hall M, Mochizuki T, Yu LJ, Mizoguchi A, Humbel BM, Madigan MT, Kimura Y, Wang-Otomo ZY

PDB-9m8m:
Structure of photosynthetic LH1-RC complex the Halophilic Nonsulfur Purple Bacterium, Rhodothalassium salexigens
Method: single particle / : Tani K, Kanno R, Inami M, Ooya T, Matsushita R, Minamino A, Takenaka S, Takaichi S, Purba ER, Hall M, Mochizuki T, Yu LJ, Mizoguchi A, Humbel BM, Madigan MT, Kimura Y, Wang-Otomo ZY

EMDB-51116:
Cryo-EM structure of Acetyl-coenzyme A synthetase (AcsA) dimer
Method: single particle / : Zheng LJ, Du Y, Bange G

EMDB-51121:
Cryo-EM structure of Acetyl-coenzyme A synthetase (AcsA) dimer
Method: single particle / : Zheng LJ, Du Y, Bange G

PDB-9g79:
Cryo-EM structure of Acetyl-coenzyme A synthetase (AcsA) dimer
Method: single particle / : Zheng LJ, Du Y, Bange G

PDB-9g7f:
Cryo-EM structure of Acetyl-coenzyme A synthetase (AcsA) dimer
Method: single particle / : Zheng LJ, Du Y, Bange G

EMDB-39835:
Photosynthetic LH2-LH1 complex from the purple bacterium Halorhodospira halophila
Method: single particle / : Tani K, Nagashima KVP, Kanno R, Hiwatashi N, Kawakami M, Nakata K, Nagashima S, Inoue K, Takaichi S, Purba ER, Hall M, Yu LJ, Madigan MT, Mizoguchi A, Humbel BM, Kimura Y, Wang-Otomo ZY

PDB-8z81:
Photosynthetic LH2-LH1 complex from the purple bacterium Halorhodospira halophila
Method: single particle / : Tani K, Nagashima KVP, Kanno R, Hiwatashi N, Kawakami M, Nakata K, Nagashima S, Inoue K, Takaichi S, Purba ER, Hall M, Yu LJ, Madigan MT, Mizoguchi A, Humbel BM, Kimura Y, Wang-Otomo ZY

EMDB-39836:
Photosynthetic LH1-RC-HiPIP complex from the purple bacterium Halorhodospira halophila
Method: single particle / : Tani K, Kanno R, Nagashima KVP, Hiwatashi N, Kawakami M, Nakata K, Nagashima S, Inoue K, Takaichi S, Purba ER, Hall M, Yu LJ, Madigan MT, Mizoguchi A, Humbel BM, Kimura Y, Wang-Otomo ZY

EMDB-39837:
Photosynthetic LH1-RC complex from the purple bacterium Halorhodospira halophila
Method: single particle / : Tani K, Kanno R, Nagashima KVP, Hiwatashi N, Kawakami M, Nakata K, Nagashima S, Inoue K, Takaichi S, Purba ER, Hall M, Yu LJ, Madigan MT, Mizoguchi A, Humbel BM, Kimura Y, Wang-Otomo ZY

PDB-8z82:
Photosynthetic LH1-RC-HiPIP complex from the purple bacterium Halorhodospira halophila
Method: single particle / : Tani K, Kanno R, Nagashima KVP, Hiwatashi N, Kawakami M, Nakata K, Nagashima S, Inoue K, Takaichi S, Purba ER, Hall M, Yu LJ, Madigan MT, Mizoguchi A, Humbel BM, Kimura Y, Wang-Otomo ZY

PDB-8z83:
Photosynthetic LH1-RC complex from the purple bacterium Halorhodospira halophila
Method: single particle / : Tani K, Kanno R, Nagashima KVP, Hiwatashi N, Kawakami M, Nakata K, Nagashima S, Inoue K, Takaichi S, Purba ER, Hall M, Yu LJ, Madigan MT, Mizoguchi A, Humbel BM, Kimura Y, Wang-Otomo ZY

EMDB-61095:
Structure of photosynthetic LH1-RC complex from the purple bacterium Blastochloris tepida
Method: single particle / : Kimura Y, Kanno R, Mori K, Matsuda Y, Seto R, Takenaka S, Mino H, Ohkubo T, Honda M, Sasaki YC, Kishikawa J, Mitsuoka K, Mio K, Hall M, Purba ER, Mochizuki T, Mizoguchi A, Humbel BM, Madigan MT, Wang-Otomo ZY, Tani K

PDB-9j2f:
Structure of photosynthetic LH1-RC complex from the purple bacterium Blastochloris tepida
Method: single particle / : Kimura Y, Kanno R, Mori K, Matsuda Y, Seto R, Takenaka S, Mino H, Ohkubo T, Honda M, Sasaki YC, Kishikawa J, Mitsuoka K, Mio K, Hall M, Purba ER, Mochizuki T, Mizoguchi A, Humbel BM, Madigan MT, Wang-Otomo ZY, Tani K

EMDB-43386:
The Cryo-EM structure of LSD1-CoREST-HDAC1 in complex with KBTBD4 enhanced by UM171 and IP6
Method: single particle / : Xie X, Mao H, Liau B, Zheng N

PDB-8voj:
The Cryo-EM structure of LSD1-CoREST-HDAC1 in complex with KBTBD4 enhanced by UM171 and IP6
Method: single particle / : Xie X, Mao H, Liau B, Zheng N

EMDB-47155:
The cryo-EM structure of apo KBTBD4
Method: single particle / : Xie X, Mao H, Liau B, Zheng N

PDB-9dtg:
The cryo-EM structure of apo KBTBD4
Method: single particle / : Xie X, Mao H, Liau B, Zheng N

EMDB-45771:
BA.5 spike/Nanosota-9 complex
Method: single particle / : Ye G, Bu F, Liu B, Li F

EMDB-45772:
Local refinement of BA.5 spike/Nanosota-9 complex
Method: single particle / : Ye G, Bu F, Liu B, Li F

EMDB-45773:
JN.1 spike/Nanosota-9 complex
Method: single particle / : Ye G, Bu F, Liu B, Li F

EMDB-45774:
Local refinement of JN.1 spike/Nanosota-9 complex
Method: single particle / : Ye G, Bu F, Liu B, Li F

PDB-9co6:
BA.5 spike/Nanosota-9 complex
Method: single particle / : Ye G, Bu F, Liu B, Li F

PDB-9co7:
Local refinement of BA.5 spike/Nanosota-9 complex
Method: single particle / : Ye G, Bu F, Liu B, Li F

PDB-9co8:
JN.1 spike/Nanosota-9 complex
Method: single particle / : Ye G, Bu F, Liu B, Li F

PDB-9co9:
Local refinement of JN.1 spike/Nanosota-9 complex
Method: single particle / : Ye G, Bu F, Liu B, Li F

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more