[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 95 items for (author: zhang & yj)

EMDB-43813:
VIR-7229 Fab fragment bound the SARS-CoV-2 BA.2.86 spike trimer (local refinement of the BA 2.86 RBD/VIR-7229 VHVL)
Method: single particle / : Park YJ, Tortorici MA, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-43842:
VIR-7229 Fab fragment bound the BA.2.86 spike trimer (global refinement)
Method: single particle / : Tortorici MA, Park YJ, Veelser D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-38466:
Cryo-EM structure of the RhoG/DOCK5/ELMO1/Rac1 complex: RhoG/DOCK5/ELMO1 focused map
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M

EMDB-60136:
Cryo-EM structure of the RhoG/DOCK5/ELMO1/Rac1 complex
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M

EMDB-60146:
Structure of DOCK5/ELMO1/Rac1 core (RhoG/DOCK5/ELMO1/Rac1 dataset, class 1)
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M

EMDB-60147:
Structure of DOCK5/ELMO1/Rac1 core (RhoG/DOCK5/ELMO1/Rac1 dataset, class 2)
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M

EMDB-60148:
Structure of DOCK5/ELMO1/Rac1 core (RhoG/DOCK5/ELMO1/Rac1 dataset, class 3)
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M

EMDB-60149:
Structure of DOCK5/ELMO1/Rac1 core (RhoG/DOCK5/ELMO1/Rac1 dataset, class 4)
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M

EMDB-60150:
Structure of DOCK5/ELMO1/Rac1 core (RhoG/DOCK5/ELMO1/Rac1 dataset, class 5)
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M

EMDB-34608:
NARROW LEAF 1-open from Japonica
Method: single particle / : Zhang SJ, He YJ, Wang N, Zhang WJ, Liu CM

EMDB-34609:
NARROW LEAF 1 from Indica
Method: single particle / : Zhang SJ, He YJ, Wang N, Zhang WJ, Liu CM

EMDB-36271:
Cryo-EM structure of the DOCK5/ELMO1 complex, focused on one protomer
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M

EMDB-34607:
NARROW LEAF 1-close from Japonica
Method: single particle / : Zhang SJ, He YJ, Wang N, Zhang WJ, Liu CM

EMDB-43737:
Umb1 umbrella toxin particle (local refinement of UmbB1 bound ALF of UmbC1 and UmbA1)
Method: single particle / : Park YJ, Zhao Q, Seattle Structural Genomics Center for Infectious Disease (SSGCID), DiMaio F, Mougous JD, Veesler D

EMDB-36202:
Cryo-EM structure of alpha-synuclein gS87 fibril
Method: helical / : Xia WC, Sun YP, Liu C, Tao YQ

EMDB-36203:
Cryo-EM structure of alpha-synuclein pS87 fibril
Method: helical / : Xia WC, Sun YP, Liu C, Tao YQ

EMDB-35514:
Cryo-EM structure of the inactive CD97
Method: single particle / : Mao C, Zhao R, Dong Y, Gao M, Chen L, Zhang C, Xiao P, Guo J, Qin J, Shen D, Ji S, Zang S, Zhang H, Wang W, Shen Q, Sun P, Zhang Y

EMDB-38938:
Cryo-EM structure of the inactive CD97
Method: single particle / : Mao C, Zhao R, Dong Y, Gao M, Chen L, Zhang C, Xiao P, Guo J, Qin J, Shen D, Ji S, Zang S, Zhang H, Wang W, Shen Q, Sun P, Zhang Y

EMDB-38939:
Cryo-EM structure of the inactive CD97
Method: single particle / : Mao C, Zhao R, Dong Y, Gao M, Chen L, Zhang C, Xiao P, Guo J, Qin J, Shen D, Ji S, Zang S, Zhang H, Wang W, Shen Q, Sun P, Zhang Y

EMDB-38980:
Cryo-EM structure of the inactive CD97
Method: single particle / : Mao C, Zhao R, Dong Y, Gao M, Chen L, Zhang C, Xiao P, Guo J, Qin J, Shen D, Ji S, Zang S, Zhang H, Wang W, Shen Q, Sun J, Zhang Y

EMDB-35516:
Cryo-EM structure of the CD97-G13 complex
Method: single particle / : Mao C, Zhao R, Dong Y, Gao M, Chen L, Zhang C, Xiao P

EMDB-29764:
Structure of the Plasmodium falciparum 20S proteasome complexed with inhibitor TDI-8304
Method: single particle / : Hsu HC, Li H

EMDB-29765:
Structure of the Plasmodium falciparum 20S proteasome beta-6 A117D mutant complexed with inhibitor WLW-vs
Method: single particle / : Hsu HC, Li H

EMDB-42148:
Structure of human constitutive 20S proteasome complexed with the inhibitor TDI-8304
Method: single particle / : Hsu HC, Li H

EMDB-29645:
Cryo-EM structure of an orphan GPCR-Gi protein signaling complex
Method: single particle / : Zhang X, Wang YJ, Li X, Liu GB, Gong WM, Zhang C

EMDB-35130:
Clostridium thermocellum RNA polymerase transcription open complex with SigI1 and its promoter
Method: single particle / : Li J, Zhang H, Li D, Feng Y, Zhu P

EMDB-35131:
Clostridium thermocellum RNA polymerase transcription open complex with SigI6 and its promoter
Method: single particle / : Li J, Zhang H, Li D, Feng Y, Zhu P

EMDB-40272:
BtCoV-422 in complex with neutralizing antibody JC57-11
Method: single particle / : McFadden E, McLellan JS

EMDB-40306:
BtCoV-422 spike in complex with JC57-11 Fab, global map
Method: single particle / : McFadden E, McLellan JS

EMDB-40310:
BtCoV-422 spike in complex with JC57-11 Fab, local map
Method: single particle / : McFadden E, McLellan JS

EMDB-34165:
Human SARM1 bounded with NMN and Nanobody-C6, Conformation 1
Method: single particle / : Cai Y, Zhang H

EMDB-34166:
Human SARM1 bounded with NMN and Nanobody-C6, Conformation 2
Method: single particle / : Cai Y, Zhang H

EMDB-34198:
Human SARM1 bounded with NMN and Nanobody-C6, double-layer structure
Method: single particle / : Cai Y, Zhang H

EMDB-33537:
Hsp90-AhR-p23 complex
Method: single particle / : Wen ZL, Zhai YJ, Zhu Y, Sun F

EMDB-34519:
Hsp90-AhR-p23-XAP2 complex
Method: single particle / : Wen ZL, Zhai YJ, Zhu Y, Sun F

EMDB-33494:
Cryo-EM structure of the TRH-bound human TRHR-Gq complex
Method: single particle / : Ji S, Dong Y, Chen L, Zang S, Shen D, Guo J, Qin J, Zhang H, Wang W, Shen Q, Mao C, Zhang Y

EMDB-32356:
Computational design of a potent Epstein-Barr virus fusion protein gB nanoparticle vaccine
Method: subtomogram averaging / : Sun C, Wang AJ, Fang XY, Gao YZ, Liu Z, Zeng MS

EMDB-27779:
Structure of the SARS-CoV-2 spike glycoprotein S2 subunit
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-32088:
Computational design of a potent Epstein-Barr virus fusion protein gB nanoparticle vaccine
Method: single particle / : Sun C, Fang XY, Wang AJ, Liu Z, Zeng MS

EMDB-33506:
RBD in complex with Fab14
Method: single particle / : Lin JQ, Tan YJE, Wu B, Lescar J

EMDB-33226:
Cryo-EM structure of E.coli retron-Ec86 in complex with its effector at 2.5 angstrom
Method: single particle / : Wang YJ, Guan ZY, Zou TT

EMDB-31827:
Cryo-EM structure of E.coli retron-Ec86 (RT-msDNA-RNA) at 3.2 angstrom
Method: single particle / : Wang YJ, Guan ZY

EMDB-30826:
Cryo-EM structure of plant receptor like protein RXEG1 in complex with xyloglucanase XEG1 and BAK1
Method: single particle / : Sun Y, Wang Y, Zhang XX, Chen ZD, Xia YQ, Sun YJ, Zhang MM, Xiao Y, Han ZF, Wang YC, Chai JJ

EMDB-32293:
Cryo-EM structure of plant receptor like kinase NbBAK1 in RXEG1-BAK1-XEG1 complex
Method: single particle / : Sun Y, Wang Y, Zhang XX, Chen ZD, Xia YQ, Sun YJ, Zhang MM, Xiao Y, Han ZF, Wang YC, Chai JJ

EMDB-32294:
Plant receptor like protein RXEG1 in complex with xyloglucanase XEG1
Method: single particle / : Sun Y, Wang Y, Zhang XX, Chen ZD, Xia YQ, Sun YJ, Zhang MM, Xiao Y, Han ZF, Wang YC, Chai JJ

EMDB-32295:
Cryo-EM structure of plant receptor like protein RXEG1
Method: single particle / : Sun Y, Wang Y, Zhang XX, Chen ZD, Xia YQ, Sun YJ, Zhang MM, Xiao Y, Han ZF, Wang YC, Chai JJ

EMDB-32528:
Cryo-EM structure of the SS-14-bound human SSTR2-Gi1 complex
Method: single particle / : Chen L, Wang W, Dong Y, Shen D, Guo J, Qin J, Zhang H, Shen Q, Zhang Y, Mao C

EMDB-32529:
Cryo-EM structure of the L-054,264-bound human SSTR2-Gi1 complex
Method: single particle / : Chen L, Wang W, Dong Y, Shen D, Guo J, Qin J, Zhang H, Shen Q, Zhang Y, Mao C

EMDB-31482:
Cryo-EM structure of the human TACAN channel in a closed state
Method: single particle / : Chen XZ, Wang YJ

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more