[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 474 items for (author: zhang & sy)

EMDB-71766:
Cryo-EM structure of J601-1B2 Fab in complex with HIV-1 BG505 DS-SOSIP Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD

EMDB-71767:
Cryo-EM structure of J601-A6 Fab in complex with HIV-1 BG505 DS-SOSIP Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

EMDB-71772:
Cryo-EM structure of K001-A1 Fab in complex with HIV-1 459C-OPT RnS DS-SOSIP Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

EMDB-71781:
Cryo-EM structure of HIV-1 459C-WT DS-SOSIP RnS Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

EMDB-71782:
Cryo-EM structure of HIV-1 459C-ALT DS-SOSIP RnS Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

PDB-9pni:
Cryo-EM structure of J601-1B2 Fab in complex with HIV-1 BG505 DS-SOSIP Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD

PDB-9pnn:
Cryo-EM structure of J601-A6 Fab in complex with HIV-1 BG505 DS-SOSIP Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

PDB-9pnu:
Cryo-EM structure of K001-A1 Fab in complex with HIV-1 459C-OPT RnS DS-SOSIP Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

PDB-9pq2:
Cryo-EM structure of HIV-1 459C-WT DS-SOSIP RnS Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

PDB-9pq3:
Cryo-EM structure of HIV-1 459C-ALT DS-SOSIP RnS Env trimer
Method: single particle / : Wang S, Zhou T, Kwong PD, Morano NC, Shapiro L

EMDB-48239:
Motor domain with Apo AAA1 and ADP AAA3 from yeast full-length dynein-1 in 0.1 mM ATP condition
Method: single particle / : Geohring IC, Chai P, Iyer BR

EMDB-48240:
Motor domain with ADP AAA1 and ADP AAA3 from yeast full-length dynein-1 in 0.1 mM ATP condition
Method: single particle / : Geohring IC, Chai P, Iyer BR

EMDB-48241:
Motor domain alone with Apo AAA1 and ADP AAA3 from yeast full-length dynein-1 and Pac1 in 0.1 mM ATP condition
Method: single particle / : Geohring IC, Chai P, Iyer BR

EMDB-48242:
Motor domain-Pac1 complex with ADP AAA1 and Apo AAA3 from yeast full-length dynein-1 and Pac1 in 0.1 mM ATP condition
Method: single particle / : Geohring IC, Chai P, Iyer BR

PDB-9mfv:
Motor domain with Apo AAA1 and ADP AAA3 from yeast full-length dynein-1 in 0.1 mM ATP condition
Method: single particle / : Geohring IC, Chai P, Iyer BR

PDB-9mfw:
Motor domain with ADP AAA1 and ADP AAA3 from yeast full-length dynein-1 in 0.1 mM ATP condition
Method: single particle / : Geohring IC, Chai P, Iyer BR

PDB-9mfx:
Motor domain alone with Apo AAA1 and ADP AAA3 from yeast full-length dynein-1 and Pac1 in 0.1 mM ATP condition
Method: single particle / : Geohring IC, Chai P, Iyer BR

PDB-9mfy:
Motor domain-Pac1 complex with ADP AAA1 and Apo AAA3 from yeast full-length dynein-1 and Pac1 in 0.1 mM ATP condition
Method: single particle / : Geohring IC, Chai P, Iyer BR

EMDB-52913:
Human chondroitin sulfate polymerase complex CHSY3-CHPF
Method: single particle / : Dutta P, Cordeiro RL, Wild R

EMDB-53011:
Focused refinement map of CHSY3-CHPF complex: N-terminal part
Method: single particle / : Dutta P, Cordeiro RL, Wild R

EMDB-53012:
Focused refinement map of CHSY3-CHPF complex: C-terminal part
Method: single particle / : Dutta P, Cordeiro RL, Wild R

EMDB-53018:
Consensus map of CHSY3-CHPF complex
Method: single particle / : Dutta P, Cordeiro RL, Wild R

PDB-9q8z:
Human chondroitin sulfate polymerase complex CHSY3-CHPF
Method: single particle / : Dutta P, Cordeiro RL, Wild R

EMDB-66205:
Cryo-EM structure of DAMGO-muOR-Gz-scFv16 complex
Method: single particle / : Zhang H, Wang X, Xi K, Shen Q, Xue J, Zhu Y, Yang G, Zhang Y

EMDB-66207:
Cryo-EM structure of DAMGO-muOR-arrestin-1-Fab30 complex
Method: single particle / : Zhang H, Wang X, Xi K, Shen Q, Xue J, Zhu Y, Yang G, Zhang Y

EMDB-66208:
Cryo-EM structure of endomorphin-1-muOR-Gz-scFv16 complex
Method: single particle / : Zhang H, Wang X, Xi K, Shen Q, Xue J, Zhu Y, Yang G, Zhang Y

EMDB-66209:
Cryo-EM structure of endomorphin-1-muOR-arrestin2-Fab30 complex
Method: single particle / : Zhang H, Wang X, Xi K, Shen Q, Xue J, Zhu Y, Yang G, Zhang Y

EMDB-63935:
structure of human KCNQ1-KCNE1-CaM complex
Method: single particle / : Hou PP, Zhang J, Wan SY, Cheng XY, Zhong L, Hu B

EMDB-64038:
structure of human KCNQ1-KCNE1-CaM complex with PIP2
Method: single particle / : Hou PP, Zhang J, Wan SY, Cheng XY, Zhong L, Hu B

EMDB-61500:
Cryo-EM structure of alpha-synuclein-H21 fibril
Method: helical / : Zeng SY, Zhang SN, Li DN, Liu C

EMDB-61843:
Yeast Mitochondrial PORIN complex
Method: single particle / : Takeda H, Endo T, Kikkawa M, Tsutsumi A

PDB-9jvq:
Yeast Mitochondrial PORIN complex
Method: single particle / : Takeda H, Endo T, Kikkawa M, Tsutsumi A

EMDB-62298:
Cryo-EM structure of the compound 4-bound human relaxin family peptide receptor 3 (RXFP3)-Gi complex
Method: single particle / : Chen Y, Zhou QT, Yan SY, Yan JH, Yang DH, Chen J, Wang MW, Rao QD, Dai AT, Yin WC, Shen DD, Zhang Y, Xia T, Stevens RC, Xu HE, Zhao LH

EMDB-19341:
TRIF Oligomerisation
Method: helical / : Moncrieffe MC, Verstak B, Whitely L, Symmoms MF, Soares SG, Egelman EH, Klenerman D, Bryant CE, Gay NJ

PDB-8rlm:
TRIF Oligomerisation
Method: helical / : Moncrieffe MC, Verstak B, Whitely L, Symmoms MF, Soares SG, Egelman EH, Klenerman D, Bryant CE, Gay NJ

EMDB-39865:
Cryo-EM structure of human GPR4-Gs complex
Method: single particle / : Chen LN, Mao CY, Cheng SZ, Liu YF, Fu YF, Ma XY, Xu P, Ji SY, Wang WW, Shen DD, Zhang HB, Shen QY, Chai R, Zhang M, Yang L, Han F, Cai XJ, Zhang Y

EMDB-39866:
Cryo-EM structure of human GPR4-Gi complex
Method: single particle / : Chen LN, Zhou H, Xi K, Cheng SZ, Liu YF, Fu YF, Ma XY, Xu P, Ji SY, Wang WW, Shen DD, Zhang HB, Shen QY, Chai R, Zhang M, Yang L, Han F, Mao CY, Cai XJ, Zhang Y

EMDB-63219:
Cryo-EM structure of human apo inactive GPR4
Method: single particle / : Chen LN, Zhou H, Xi K, Cheng SZ, Liu YF, Fu YF, Ma XY, Xu P, Ji SY, Wang WW, Shen DD, Zhang HB, Shen QY, Chai R, Zhang M, Yang L, Han F, Mao CY, Cai XJ, Zhang Y

EMDB-63220:
Cryo-EM structure of antagonist-bounded inactive human GPR4
Method: single particle / : Chen LN, Zhou H, Xi K, Cheng SZ, Liu YF, Fu YF, Ma XY, Xu P, Ji SY, Wang WW, Shen DD, Zhang HB, Shen QY, Chai R, Zhang M, Yang L, Han F, Mao CY, Cai XJ, Zhang Y

EMDB-46948:
Structure of URAT1 with no external ligand added
Method: single particle / : Suo Y, Fedor JG, Lee SY

EMDB-46949:
Structure of URAT1 in complex with benzbromarone
Method: single particle / : Suo Y, Fedor JG, Lee SY

EMDB-46950:
Structure of URAT1 in complex with lesinurad
Method: single particle / : Suo Y, Fedor JG, Lee SY

EMDB-46951:
Structure of URAT1 in complex with TD-3
Method: single particle / : Suo Y, Fedor JG, Lee SY

EMDB-46715:
MERS NTD-specific polyclonal antibodies
Method: single particle / : Ward AB, Bangaru S

EMDB-43554:
In vitro reconstituted human chromatin
Method: electron tomography / : Uckelmann M, Taveneau C, Levina V, Trepout S, de Marco A, Davidovich C

EMDB-39345:
Cryo-EM structure of human apo GPR156
Method: single particle / : Ma XY, Chen LN, Liao MH, Zhang LY, Xi K, Guo JM

EMDB-39356:
Cryo-EM structure of human GPR156-Gi3 complex
Method: single particle / : Ma XY, Chen LN, Liao MH, Zhang LY, Xi K, Guo JM

EMDB-44100:
Cryo-EM structure of the mouse TRPM3 alpha 2 channel in complex with primidone
Method: single particle / : Yin Y, Park CG, Feng S, Zhang F, Guan Z, Sharma K, Borgnia MJ, Im W, Lee SY

EMDB-44101:
Cryo-EM structure of the mouse TRPM3 alpha 2 channel in complex with cholesteryl hemisuccinate
Method: single particle / : Yin Y, Park CG, Feng S, Zhang F, Guan Z, Sharma K, Borgnia MJ, Im W, Lee SY

EMDB-44102:
Cryo-EM structure of the mouse TRPM3 alpha 2 channel in complex with the neurosteroid pregnenolone sulfate and the synthetic agonist CIM 0216
Method: single particle / : Yin Y, Park CG, Feng S, Zhang F, Guan Z, Sharma K, Borgnia MJ, Im W, Lee SY

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more