[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 7,061 items for (author: ze & l)

EMDB-49589:
A membrane protein with cofactor determined by single-particle CryoEM
Method: single particle / : Suder DS, Gonen S

EMDB-49622:
Structure of photoactivated rhodopsin in complex with a megabody
Method: single particle / : Suder DS, Gonen S

PDB-9nnz:
Structure of rod opsin in complex with a megabody
Method: single particle / : Suder DS, Gonen S

PDB-9noz:
Structure of photoactivated rhodopsin in complex with a megabody
Method: single particle / : Suder DS, Gonen S

EMDB-53259:
Inward-open structure of human GABA transporter 3 bound to selective inhibitor SR-THAP
Method: single particle / : Mortensen JS, Bavo F, Jensen MH, Pedersen APS, Storm JP, Pape T, Frolund B, Wellendorph P, Shahsavar A

PDB-9qo8:
Inward-open structure of human GABA transporter 3 bound to selective inhibitor SR-THAP
Method: single particle / : Mortensen JS, Bavo F, Jensen MH, Pedersen APS, Storm JP, Pape T, Frolund B, Wellendorph P, Shahsavar A

EMDB-53252:
Pre-activated 9-subunit COP9 signalosome and neddylated SCF (Skp1-Skp2-Cks1) complex structure
Method: single particle / : Ding S, Clapperton JA, Maeots ME, Shaaban M, Enchev RI

EMDB-53254:
Dissociation-state-1 of 9-subunit CSN and SCF (SKP1-SKP2-CKS1) complex
Method: single particle / : Ding S, Clapperton JA, Maeots ME, Enchev RI

EMDB-53255:
Dissociation-state-2 of 9-subunit CSN and SCF (SKP1-SKP2-CKS1) complex
Method: single particle / : Ding S, Clapperton JA, Maeots ME, Enchev RI

PDB-9qo0:
Pre-activated 9-subunit COP9 signalosome and neddylated SCF (Skp1-Skp2-Cks1) complex structure
Method: single particle / : Ding S, Clapperton JA, Maeots ME, Shaaban M, Enchev RI

PDB-9qo2:
Dissociation-state-1 of 9-subunit CSN and SCF (SKP1-SKP2-CKS1) complex
Method: single particle / : Ding S, Clapperton JA, Maeots ME, Enchev RI

PDB-9qo3:
Dissociation-state-2 of 9-subunit CSN and SCF (SKP1-SKP2-CKS1) complex
Method: single particle / : Ding S, Clapperton JA, Maeots ME, Enchev RI

EMDB-56131:
L. pneumophila 3-methylcrotonyl-CoA carboxylase holoenzyme A3B6
Method: single particle / : Meir A, Durie C, Somarathne R, Shrestha R, Zehra M, Brodeur C, Bhella D, Lai WC

PDB-9tqc:
L. pneumophila 3-methylcrotonyl-CoA carboxylase holoenzyme A3B6
Method: single particle / : Meir A, Durie C, Somarathne R, Shrestha R, Zehra M, Brodeur C, Bhella D, Lai WC

EMDB-53311:
Cryo-EM map of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

EMDB-53341:
Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

EMDB-55145:
Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

PDB-9qqq:
Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

PDB-9qsj:
Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

PDB-9sro:
Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

EMDB-53353:
Structure of Oceanobacillus iheyensis group II intron domains D1-D6
Method: single particle / : Jadhav SS, Nigro M, Marcia M

PDB-9qtj:
Structure of Oceanobacillus iheyensis group II intron domains D1-D6
Method: single particle / : Jadhav SS, Nigro M, Marcia M

EMDB-70395:
Ab1999 in complex with HIV-1 Env RC1
Method: single particle / : Lin ZJ, Cui J, Du J, Relano-Rodriguez I, Escolano A, Pallesen J

PDB-9oed:
Ab1999 in complex with HIV-1 Env RC1
Method: single particle / : Lin ZJ, Cui J, Du J, Relano-Rodriguez I, Escolano A, Pallesen J

EMDB-53253:
Activated 9-subunit COP9 signalosome and neddylated SCF (SKP1-SKP2-CKS1) complex structure
Method: single particle / : Ding S, Clapperton JA, Maeots ME, Shaaban M, Enchev RI

PDB-9qo1:
Activated 9-subunit COP9 signalosome and neddylated SCF (SKP1-SKP2-CKS1) complex structure
Method: single particle / : Ding S, Clapperton JA, Maeots ME, Shaaban M, Enchev RI

EMDB-48920:
Cryo-ET of FIB-milled synapse region between CD19+ NALM6 leukemia cells and T-cells expressing 8H47 CD19 CAR construct
Method: electron tomography / : Chen X, Walters KJ

EMDB-48925:
Cryo-ET of FIB-milled synapse region between CD19+ NALM6 leukemia cells and T-cells expressing 8H15 CD19 CAR construct
Method: electron tomography / : Chen X, Walters KJ

EMDB-48951:
Cryo-ET of FIB-milled synapse region between CD19+ NALM6 leukemia cells and T-cells expressing 8H15 CD19 CAR construct
Method: electron tomography / : Chen X, Walters KJ

EMDB-49041:
Cryo-ET of FIB-milled synapse region between CD19+ NALM6 leukemia cells and T-cells expressing 8H47 CD19 CAR construct
Method: electron tomography / : Chen X, Walters KJ

EMDB-49051:
Cryo-ET of FIB-milled synapse region between CD19+ NALM6 leukemia cells and T-cells expressing 8H8 CD19 CAR construct, (sample2, region3).
Method: electron tomography / : Chen X, Walters KJ

EMDB-49052:
Cryo-ET of FIB-milled synapse region between CD19+ NALM6 leukemia cells and T-cells expressing 8H8 CD19 CAR construct, (sample2, region2).
Method: electron tomography / : Chen X, Walters KJ

EMDB-49054:
Cryo-ET of FIB-milled synapse region between CD19+ NALM6 leukemia cells and T-cells expressing 8H8 CD19 CAR construct, (sample 1).
Method: electron tomography / : Chen X, Walters KJ

EMDB-49945:
Structure of Native Bovine Rhodopsin in Complex with Mb7 in the Dark State
Method: single particle / : Huang W, Salom-Arbona D, Suder D, Taylor DJ, Palczewski K

PDB-9nyx:
Structure of Native Bovine Rhodopsin in Complex with Mb7 in the Dark State
Method: single particle / : Huang W, Salom-Arbona D, Suder D, Taylor DJ, Palczewski K

EMDB-70231:
Ab1983 in complex with HIV-1 Env variant WIN332
Method: single particle / : Lin ZJ, Cui J, Du J, Relano-Rodriguez I, Escolano A, Pallesen J

PDB-9o8m:
Ab1983 in complex with HIV-1 Env variant WIN332
Method: single particle / : Lin ZJ, Cui J, Du J, Relano-Rodriguez I, Escolano A, Pallesen J

EMDB-53256:
Dissociation-state-3 of 9-subunit CSN and SCF (SKP1-SKP2-CKS1) complex
Method: single particle / : Ding S, Clapperton JA, Maeots ME, Enchev RI

EMDB-53257:
Dissociation-state-4 of 9-subunit CSN and SCF (SKP1-SKP2-CKS1) complex
Method: single particle / : Ding S, Clapperton JA, Maeots ME, Enchev RI

EMDB-53258:
9-subunit COP9 signalosome complex
Method: single particle / : Ding S, Clapperton JA, Maeots ME, Enchev RI

PDB-9qo4:
Dissociation-state-3 of 9-subunit CSN and SCF (SKP1-SKP2-CKS1) complex
Method: single particle / : Ding S, Clapperton JA, Maeots ME, Enchev RI

PDB-9qo5:
Dissociation-state-4 of 9-subunit CSN and SCF (SKP1-SKP2-CKS1) complex
Method: single particle / : Ding S, Clapperton JA, Maeots ME, Enchev RI

PDB-9qo6:
9-subunit COP9 signalosome complex
Method: single particle / : Ding S, Clapperton JA, Maeots ME, Enchev RI

EMDB-63785:
Cryo-EM structure of dopaminated Tau fibril
Method: helical / : Liu Z, Li X, Liu C

PDB-9mc2:
Cryo-EM structure of dopaminated Tau fibril
Method: helical / : Liu Z, Li X, Liu C

EMDB-71739:
Legionella Dot/Icm T4SS
Method: subtomogram averaging / : Dutka P, Liu Y, Maggi S, Jensen GJ

EMDB-72186:
Focused refinement map of the periplasmic part of the Legionella pneumophila T4SS.
Method: subtomogram averaging / : Dutka P, Liu Y, Maggi S, Jensen GJ

EMDB-72187:
Focused refinement map of the cytoplasmic region of the Legionella pneumophila T4SS.
Method: subtomogram averaging / : Dutka P, Liu Y, Maggi S, Jensen GJ

EMDB-63344:
Cryo-EM structure of Fission yeast centromeric nucleosome Class 1
Method: single particle / : Xiong Y, Zang J

EMDB-63345:
Cryo-EM structure of Fission yeast centromeric nucleosome Class 2
Method: single particle / : Xiong Y, Zang J

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more