[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 6,779 items for (author: ze & l)

EMDB-63984:
Ovorubin from the golden apple snail (Pomacea canaliculata)
Method: single particle / : Wangkanont K, Saw WG, Tran BN, Wilasluck P

PDB-9uaj:
Ovorubin from the golden apple snail (Pomacea canaliculata)
Method: single particle / : Wangkanont K, Saw WG, Tran BN, Wilasluck P

EMDB-45190:
Yersinia entomophaga holotoxin complex in prepore conformation
Method: single particle / : Low YS, Landsberg MJ

EMDB-45422:
Yersinia entomophaga holotoxin complex in pore conformation
Method: single particle / : Low YS, Landsberg MJ

EMDB-45423:
Yersinia entomophaga toxin complex TcA subunit
Method: single particle / : Low YS, Landsberg MJ

PDB-9c4k:
Yersinia entomophaga holotoxin complex in prepore conformation
Method: single particle / : Low YS, Landsberg MJ

PDB-9cbc:
Yersinia entomophaga holotoxin complex in pore conformation
Method: single particle / : Low YS, Landsberg MJ

EMDB-65064:
cryoEM structure of retron-Eco7 complex
Method: single particle / : Dai ZK, Wang YJ, Guan ZY, Zou TT

PDB-9vhe:
cryoEM structure of retron-Eco7 complex
Method: single particle / : Dai ZK, Wang YJ, Guan ZY, Zou TT

EMDB-63452:
Cryo-EM structure of the cytosolic ARMH2-EFCAB9-CATSPERz subcomplex of the mouse CatSpermasome
Method: single particle / : Zhao Q, Lin S, Xu Q, Wu J

PDB-9lwo:
Cryo-EM structure of the cytosolic ARMH2-EFCAB9-CATSPERz subcomplex of the mouse CatSpermasome
Method: single particle / : Zhao Q, Lin S, Xu Q, Wu J

EMDB-52097:
Co-chaperone Bag1-bound human 26S proteasome in SBAG1 state
Method: single particle / : Cheng TC, Sakata E, Muntaner J, Maestro-Lopez M, Cuellar J, Valpuesta JM

EMDB-52193:
Co-chaperone Bag1-bound human 26S proteasome in SBAG2 state
Method: single particle / : Cheng TC, Sakata E, Muntaner J, Maestro-Lopez M, Cuellar J, Valpuesta JM

EMDB-52194:
Co-chaperone Bag1-bound human 26S proteasome in SBAG3 state
Method: single particle / : Cheng TC, Sakata E, Muntaner J, Maestro-Lopez M, Cuellar J, Valpuesta JM

EMDB-52195:
Hsp70-NBD:Bag1:Rpn1 ternary complex class 1
Method: single particle / : Cheng TC, Sakata E, Muntaner J, Maestro-Lopez M, Cuellar J, Valpuesta JM

EMDB-52196:
Hsp70-NBD:Bag1:Rpn1 ternary complex class 2
Method: single particle / : Cheng TC, Sakata E, Muntaner J, Maestro-Lopez M, Cuellar J, Valpuesta JM

EMDB-55527:
Early Expressome Composite Map of TEC and 30S IC
Method: single particle / : Roske JJ, Paris G, Goyal A, Rodnina MV, Zenkin N, Bandyra K, Luisi BF

EMDB-55528:
Early Expressome Consensus Refinement
Method: single particle / : Roske JJ, Paris G, Goyal A, Rodnina MV, Zenkin N, Bandyra K, Luisi BF

EMDB-55529:
Early Expressome RNAP/TEC body
Method: single particle / : Roske JJ, Paris G, Goyal A, Rodnina MV, Zenkin N, Bandyra K, Luisi BF

EMDB-55530:
E. coli 30S IC containing mRNA, IF1 and IF3
Method: single particle / : Roske JJ, Paris G, Goyal A, Rodnina MV, Zenkin N, Bandyra K, Luisi BF

EMDB-55531:
E. coli 30S IC containing mRNA, initiator tRNA, IF1 and IF2
Method: single particle / : Roske JJ, Paris G, Goyal A, Rodnina MV, Zenkin N, Bandyra K, Luisi BF

EMDB-51665:
C. thermocellum UvrA (basal conformation)
Method: single particle / : Nirwal S, Czarnocki-Cieciura M, Nowotny M

EMDB-51666:
C. thermocellum UvrA in complex with AMPPNP (basal conformation)
Method: single particle / : Nirwal S, Czarnocki-Cieciura M, Nowotny M

EMDB-51667:
C. thermocellum UvrA in complex with unmodified DNA and AMPPNP (basal conformation)
Method: single particle / : Nirwal S, Czarnocki-Cieciura M, Nowotny M

EMDB-51668:
C. thermocellum UvrA in complex with unmodified DNA and AMPPNP (ATP-bound conformation 1)
Method: single particle / : Nirwal S, Czarnocki-Cieciura M, Nowotny M

EMDB-51669:
C. thermocellum UvrA in complex with unmodified DNA and AMPPNP (ATP-bound conformation 2)
Method: single particle / : Nirwal S, Czarnocki-Cieciura M, Nowotny M

EMDB-51670:
C. thermocellum UvrA in complex with DNA with an abasic site (basal conformation)
Method: single particle / : Nirwal S, Czarnocki-Cieciura M, Nowotny M

EMDB-51671:
C. thermocellum UvrA in complex with DNA with an abasic site and AMPPNP (ATP-bound conformation 1)
Method: single particle / : Nirwal S, Czarnocki-Cieciura M, Nowotny M

EMDB-51672:
C. thermocellum UvrA in complex with DNA with an abasic site and AMPPNP (ATP-bound conformation 2)
Method: single particle / : Nirwal S, Czarnocki-Cieciura M, Nowotny M

EMDB-51673:
C. thermocellum UvrA in complex with DNA with a fluorescein modification (basal conformation)
Method: single particle / : Nirwal S, Czarnocki-Cieciura M, Nowotny M

EMDB-51674:
C. thermocellum UvrA in complex with DNA with a fluorescein modification and AMPPNP (ATP-bound conformation 1)
Method: single particle / : Nirwal S, Czarnocki-Cieciura M, Nowotny M

EMDB-51675:
C. thermocellum UvrA (K647A) in complex with DNA with a fluorescein modification (basal conformation)
Method: single particle / : Nirwal S, Czarnocki-Cieciura M, Nowotny M

EMDB-51676:
C. thermocellum UvrA in complex with DNA with a fluorescein modification and ADP (basal conformation)
Method: single particle / : Nirwal S, Czarnocki-Cieciura M, Nowotny M

EMDB-51677:
C. thermocellum UvrA-UvrB in complex with DNA with a fluorescein modification and AMPPNP: consensus map
Method: single particle / : Nirwal S, Czarnocki-Cieciura M, Nowotny M

EMDB-51678:
C. thermocellum UvrA (K39A) in complex with DNA with a fluorescein modification and AMPPNP (basal conformation)
Method: single particle / : Nirwal S, Czarnocki-Cieciura M, Nowotny M

EMDB-51690:
C. thermocellum UvrA-UvrB in complex with DNA with a fluorescein modification and AMPPNP: focused map
Method: single particle / : Nirwal S, Czarnocki-Cieciura M, Nowotny M

EMDB-51691:
C. thermocellum UvrA-UvrB in complex with DNA with a fluorescein modification and AMPPNP (composite map)
Method: single particle / : Nirwal S, Czarnocki-Cieciura M, Nowotny M

PDB-9gxk:
C. thermocellum UvrA (basal conformation)
Method: single particle / : Nirwal S, Czarnocki-Cieciura M, Nowotny M

PDB-9gxl:
C. thermocellum UvrA in complex with AMPPNP (basal conformation)
Method: single particle / : Nirwal S, Czarnocki-Cieciura M, Nowotny M

PDB-9gxm:
C. thermocellum UvrA in complex with unmodified DNA and AMPPNP (basal conformation)
Method: single particle / : Nirwal S, Czarnocki-Cieciura M, Nowotny M

PDB-9gxn:
C. thermocellum UvrA in complex with unmodified DNA and AMPPNP (ATP-bound conformation 1)
Method: single particle / : Nirwal S, Czarnocki-Cieciura M, Nowotny M

PDB-9gxo:
C. thermocellum UvrA in complex with unmodified DNA and AMPPNP (ATP-bound conformation 2)
Method: single particle / : Nirwal S, Czarnocki-Cieciura M, Nowotny M

PDB-9gxp:
C. thermocellum UvrA in complex with DNA with an abasic site (basal conformation)
Method: single particle / : Nirwal S, Czarnocki-Cieciura M, Nowotny M

PDB-9gxq:
C. thermocellum UvrA in complex with DNA with an abasic site and AMPPNP (ATP-bound conformation 1)
Method: single particle / : Nirwal S, Czarnocki-Cieciura M, Nowotny M

PDB-9gxr:
C. thermocellum UvrA in complex with DNA with an abasic site and AMPPNP (ATP-bound conformation 2)
Method: single particle / : Nirwal S, Czarnocki-Cieciura M, Nowotny M

PDB-9gxs:
C. thermocellum UvrA in complex with DNA with a fluorescein modification (basal conformation)
Method: single particle / : Nirwal S, Czarnocki-Cieciura M, Nowotny M

PDB-9gxt:
C. thermocellum UvrA in complex with DNA with a fluorescein modification and AMPPNP (ATP-bound conformation 1)
Method: single particle / : Nirwal S, Czarnocki-Cieciura M, Nowotny M

PDB-9gxu:
C. thermocellum UvrA (K647A) in complex with DNA with a fluorescein modification (basal conformation)
Method: single particle / : Nirwal S, Czarnocki-Cieciura M, Nowotny M

PDB-9gxv:
C. thermocellum UvrA in complex with DNA with a fluorescein modification and ADP (basal conformation)
Method: single particle / : Nirwal S, Czarnocki-Cieciura M, Nowotny M

PDB-9gxw:
C. thermocellum UvrA (K39A) in complex with DNA with a fluorescein modification and AMPPNP (basal conformation)
Method: single particle / : Nirwal S, Czarnocki-Cieciura M, Nowotny M

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more