[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 81 items for (author: yutin & n)

EMDB-37240:
SARS-CoV-2 Omicron spike in complex with 5817 Fab

EMDB-37241:
The interface structure of Omicron RBD binding to 5817 Fab

PDB-8khc:
SARS-CoV-2 Omicron spike in complex with 5817 Fab

PDB-8khd:
The interface structure of Omicron RBD binding to 5817 Fab

EMDB-35602:
Cryo-EM structure of human HCN3 channel in apo state

PDB-8inz:
Cryo-EM structure of human HCN3 channel in apo state

EMDB-35832:
Cryo-EM structure of the GPR34 receptor in complex with the antagonist YL-365

PDB-8iyx:
Cryo-EM structure of the GPR34 receptor in complex with the antagonist YL-365

PDB-8ckb:
Asymmetric reconstruction of the crAss001 virion

EMDB-40054:
Cryo-EM structure of fish immunogloblin M-Fc

PDB-8ghz:
Cryo-EM structure of fish immunogloblin M-Fc

EMDB-40270:
Cryo-EM structure of GPR34-Gi complex

PDB-8sai:
Cryo-EM structure of GPR34-Gi complex

EMDB-14088:
Icosahedral capsid of the phicrAss001 virion

EMDB-14089:
Portal protein assembly of the phicrAss001 virion with C12 symmetry imposed

EMDB-14090:
Unique vertex of the phicrAss001 virion with C5 symmetry imposed

EMDB-14091:
Unique vertex of the phicrAss001 virion

EMDB-14092:
Tail barrel assembly of the phicrAss001 virion with C12 symmetry imposed

EMDB-14093:
Tip section.

EMDB-14094:
Tail assembly of the phicrAss001 virion with C6 symmetry imposed

EMDB-14100:
Asymmetric reconstruction of the phicrAss001 virion

PDB-7qof:
Icosahedral capsid of the phicrAss001 virion

PDB-7qog:
Portal protein assembly of the phicrAss001 virion with C12 symmetry imposed

PDB-7qoh:
Unique vertex of the phicrAss001 virion with C5 symmetry imposed

PDB-7qoi:
Unique vertex of the phicrAss001 virion

PDB-7qoj:
Tail barrel assembly of the phicrAss001 virion with C12 symmetry imposed

PDB-7qok:
Tail muzzle assembly of the phicrAss001 virion with C6 symmetry imposed

PDB-7qol:
Tail assembly of the phicrAss001 virion with C6 symmetry imposed

EMDB-31479:
Cryo-EM structure of human angiotensin receptor AT1R in complex Gq proteins and Sar1-AngII

PDB-7f6g:
Cryo-EM structure of human angiotensin receptor AT1R in complex Gq proteins and Sar1-AngII

EMDB-34464:
Structure of apo SARS-CoV-2 spike protein with one RBD up

EMDB-34465:
Complex structure of a small molecule (SPC-14) bound SARS-CoV-2 spike protein, closed state

PDB-8h3d:
Structure of apo SARS-CoV-2 spike protein with one RBD up

PDB-8h3e:
Complex structure of a small molecule (SPC-14) bound SARS-CoV-2 spike protein, closed state

EMDB-32297:
Cryo-EM Structure of Human Gastrin Releasing Peptide Receptor in complex with the agonist Gastrin Releasing Peptide and Gq heterotrimers

EMDB-32298:
Cryo-EM Structure of Human Gastrin Releasing Peptide Receptor in complex with the agonist Bombesin (6-14) [D-Phe6, beta-Ala11, Phe13, Nle14] and Gq heterotrimers

PDB-7w3z:
Cryo-EM Structure of Human Gastrin Releasing Peptide Receptor in complex with the agonist Gastrin Releasing Peptide and Gq heterotrimers

PDB-7w40:
Cryo-EM Structure of Human Gastrin Releasing Peptide Receptor in complex with the agonist Bombesin (6-14) [D-Phe6, beta-Ala11, Phe13, Nle14] and Gq heterotrimers

EMDB-32536:
Cryo-EM structure of Mycobacterium tuberculosis irtAB in inward-facing state

EMDB-32537:
Cryo-EM structure of Mycobacterium tuberculosis irtAB in complex with an AMP-PNP

EMDB-32538:
Cryo-EM structure of Mycobacterium tuberculosis irtAB complexed with ATP in an occluded conformation

EMDB-32539:
Cryo-EM structure of Mycobacterium tuberculosis irtAB in complex with ADP

PDB-7wiu:
Cryo-EM structure of Mycobacterium tuberculosis irtAB in inward-facing state

PDB-7wiv:
Cryo-EM structure of Mycobacterium tuberculosis irtAB in complex with an AMP-PNP

PDB-7wiw:
Cryo-EM structure of Mycobacterium tuberculosis irtAB complexed with ATP in an occluded conformation

PDB-7wix:
Cryo-EM structure of Mycobacterium tuberculosis irtAB in complex with ADP

PDB-7t3h:
MicroED structure of Dynobactin

EMDB-14242:
E. coli BAM complex (BamABCDE) bound to dynobactin A

PDB-7r1w:
E. coli BAM complex (BamABCDE) bound to dynobactin A

EMDB-30924:
CryoEM structure of full length mouse TRPML2

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more