[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 107 items for (author: yutin & n)

EMDB-46448:
CryoEM structure of PAR2 with endogenous tethered ligand.
Method: single particle / : Lyu Z, Lyu X, McGrath AP, Kang Y

EMDB-46571:
CryoEM structure of PAR1 with endogenous tethered ligand
Method: single particle / : Lyu X, Lyu Z, McGrath AP, Kang Y

EMDB-47687:
CryoEM structure of PAR2 with GB88
Method: single particle / : Lyu X, Lyu Z, Malyutin AG, McGrath AP, Kang Y

PDB-9d0a:
CryoEM structure of PAR2 with endogenous tethered ligand.
Method: single particle / : Lyu Z, Lyu X, McGrath AP, Kang Y

PDB-9d4z:
CryoEM structure of PAR1 with endogenous tethered ligand
Method: single particle / : Lyu X, Lyu Z, McGrath AP, Kang Y

PDB-9e7r:
CryoEM structure of PAR2 with GB88
Method: single particle / : Lyu X, Lyu Z, Malyutin AG, McGrath AP, Kang Y

EMDB-39074:
Versatile Aromatic Prenyltransferase auraA in complex with DMAPP and cyclo-(L-Val-L-His)
Method: single particle / : Li D, Zhang Y, Wang W, Wang P

EMDB-39075:
Versatile Aromatic Prenyltransferase auraA for Imidazole-Containing Diketopiperazines
Method: single particle / : Li D, Zhang Y, Wang W, Wang P

EMDB-39079:
Versatile Aromatic Prenyltransferase auraA in complex with DMSPP and cyclo-(L-Val-DH-His)
Method: single particle / : Li D, Zhang Y, Wang W, Wang P

EMDB-61491:
Versatile Aromatic Prenyltransferase auraA mutant-Y207A in complex with DMSPP
Method: single particle / : Li D, Zhang Y, Wang W, Wang P

PDB-8y9d:
Versatile Aromatic Prenyltransferase auraA in complex with DMAPP and cyclo-(L-Val-L-His)
Method: single particle / : Li D, Zhang Y, Wang W, Wang P

PDB-8y9e:
Versatile Aromatic Prenyltransferase auraA for Imidazole-Containing Diketopiperazines
Method: single particle / : Li D, Zhang Y, Wang W, Wang P

PDB-8y9g:
Versatile Aromatic Prenyltransferase auraA in complex with DMSPP and cyclo-(L-Val-DH-His)
Method: single particle / : Li D, Zhang Y, Wang W, Wang P

PDB-9jhx:
Versatile Aromatic Prenyltransferase auraA mutant-Y207A in complex with DMSPP
Method: single particle / : Li D, Zhang Y, Wang W, Wang P

EMDB-35603:
Cryo-EM structure of human HCN3 channel with cAMP
Method: single particle / : Yu B, Lu QY, Li J, Zhang J

PDB-8io0:
Cryo-EM structure of human HCN3 channel with cAMP
Method: single particle / : Yu B, Lu QY, Li J, Zhang J

EMDB-36789:
Neutralization antibody ZCP3B4 bound with SARS-CoV-2 Omicron BA.5 RBD
Method: single particle / : Tang B, Dang S

PDB-8k19:
Neutralization antibody ZCP3B4 bound with SARS-CoV-2 Omicron BA.5 RBD
Method: single particle / : Tang B, Dang S

EMDB-34872:
S protein of SARS-CoV-2 in complex with 3711
Method: single particle / : Zhang YY, Guo YY, Zhou Q

EMDB-34873:
S protein of SARS-CoV-2 in complex with 3711 focused on NTD_3711 sub-complex
Method: single particle / : Zhang YY, Guo YY

EMDB-34874:
S protein of SARS-CoV-2 in complex with 26434
Method: single particle / : Zhang YY, Guo YY, Zhou Q

EMDB-34875:
S protein of SARS-CoV-2 in complex with 26434 focused on NTD_26434 sub-complex
Method: single particle / : Zhang YY, Guo YY

PDB-8hlc:
S protein of SARS-CoV-2 in complex with 3711
Method: single particle / : Zhang YY, Guo YY, Zhou Q

PDB-8hld:
S protein of SARS-CoV-2 in complex with 26434
Method: single particle / : Zhang YY, Guo YY, Zhou Q

EMDB-37240:
SARS-CoV-2 Omicron spike in complex with 5817 Fab
Method: single particle / : Cao L, Wang X

EMDB-37241:
The interface structure of Omicron RBD binding to 5817 Fab
Method: single particle / : Cao L, Wang X

PDB-8khc:
SARS-CoV-2 Omicron spike in complex with 5817 Fab
Method: single particle / : Cao L, Wang X

PDB-8khd:
The interface structure of Omicron RBD binding to 5817 Fab
Method: single particle / : Cao L, Wang X

EMDB-35870:
Cryo-EM map of human GPR34
Method: single particle / : Yong XH, Zhao C, Yan W, Shao ZH

EMDB-35871:
Cryo-EM map of Gi-scFv16 complex
Method: single particle / : Yong XH, Zhao C, Yan W, Shao ZH

EMDB-35602:
Cryo-EM structure of human HCN3 channel in apo state
Method: single particle / : Yu B, Lu QY, Li J, Zhang J

PDB-8inz:
Cryo-EM structure of human HCN3 channel in apo state
Method: single particle / : Yu B, Lu QY, Li J, Zhang J

EMDB-35832:
Cryo-EM structure of the GPR34 receptor in complex with the antagonist YL-365
Method: single particle / : Jia GW, Wang X, Zhang CB, Dong HH, Su ZM

PDB-8iyx:
Cryo-EM structure of the GPR34 receptor in complex with the antagonist YL-365
Method: single particle / : Jia GW, Wang X, Zhang CB, Dong HH, Su ZM

PDB-8ckb:
Asymmetric reconstruction of the crAss001 virion
Method: single particle / : Bayfield OW, Shkoporov AN, Yutin N, Khokhlova EV, Smith JLR, Hawkins DEDP, Koonin EV, Hill C, Antson AA

EMDB-40054:
Cryo-EM structure of fish immunogloblin M-Fc
Method: single particle / : Lyu M, Stadtmueller BM, Malyutin AG

PDB-8ghz:
Cryo-EM structure of fish immunogloblin M-Fc
Method: single particle / : Lyu M, Stadtmueller BM, Malyutin AG

EMDB-40270:
Cryo-EM structure of GPR34-Gi complex
Method: single particle / : Yong XH, Zhao C, Yan W, Shao ZH

PDB-8sai:
Cryo-EM structure of GPR34-Gi complex
Method: single particle / : Yong XH, Zhao C, Yan W, Shao ZH

EMDB-14088:
Icosahedral capsid of the phicrAss001 virion
Method: single particle / : Bayfield OW, Shkoporov AN, Yutin N, Khokhlova EV, Smith JLR, Hawkins DEDP, Koonin EV, Hill C, Antson AA

EMDB-14089:
Portal protein assembly of the phicrAss001 virion with C12 symmetry imposed
Method: single particle / : Bayfield OW, Shkoporov AN, Yutin N, Khokhlova EV, Smith JLR, Hawkins DEDP, Koonin EV, Hill C, Antson AA

EMDB-14090:
Unique vertex of the phicrAss001 virion with C5 symmetry imposed
Method: single particle / : Bayfield OW, Shkoporov AN, Yutin N, Khokhlova EV, Smith JLR, Hawkins DEDP, Koonin EV, Hill C, Antson AA

EMDB-14091:
Unique vertex of the phicrAss001 virion
Method: single particle / : Bayfield OW, Shkoporov AN, Yutin N, Khokhlova EV, Smith JLR, Hawkins DEDP, Koonin EV, Hill C, Antson AA

EMDB-14092:
Tail barrel assembly of the phicrAss001 virion with C12 symmetry imposed
Method: single particle / : Bayfield OW, Shkoporov AN, Yutin N, Khokhlova EV, Smith JLR, Hawkins DEDP, Koonin EV, Hill C, Antson AA

EMDB-14093:
Tip section.
Method: single particle / : Bayfield OW, Shkoporov AN, Yutin N, Khokhlova EV, Smith JLR, Hawkins DEDP, Koonin EV, Hill C, Antson AA

EMDB-14094:
Tail assembly of the phicrAss001 virion with C6 symmetry imposed
Method: single particle / : Bayfield OW, Shkoporov AN, Yutin N, Khokhlova EV, Smith JLR, Hawkins DEDP, Koonin EV, Hill C, Antson AA

EMDB-14100:
Asymmetric reconstruction of the phicrAss001 virion
Method: single particle / : Bayfield OW, Shkoporov AN, Yutin N, Khokhlova EV, Smith JLR, Hawkins DEDP, Koonin EV, Hill C, Antson AA

PDB-7qof:
Icosahedral capsid of the phicrAss001 virion
Method: single particle / : Bayfield OW, Shkoporov AN, Yutin N, Khokhlova EV, Smith JLR, Hawkins DEDP, Koonin EV, Hill C, Antson AA

PDB-7qog:
Portal protein assembly of the phicrAss001 virion with C12 symmetry imposed
Method: single particle / : Bayfield OW, Shkoporov AN, Yutin N, Khokhlova EV, Smith JLR, Hawkins DEDP, Koonin EV, Hill C, Antson AA

PDB-7qoh:
Unique vertex of the phicrAss001 virion with C5 symmetry imposed
Method: single particle / : Bayfield OW, Shkoporov AN, Yutin N, Khokhlova EV, Smith JLR, Hawkins DEDP, Koonin EV, Hill C, Antson AA

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more