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Showing 1 - 50 of 63 items for author: yu, & i

PDB-5nd2:
Microtubule-bound MKLP2 motor domain in the presence of ADP
Method: single particle / : Atherton J, Yu IM, Cook A, Muretta JM, Joseph AP, Major J, Sourigues Y, Clause J, Topf M, Rosenfeld SS, Houdusse A, Moores CA

PDB-5nd3:
Microtubule-bound MKLP2 motor domain in the with no nucleotide
Method: single particle / : Atherton J, Yu IM, Cook A, Muretta JM, Joseph AP, Major J, Sourigues Y, Clause J, Topf M, Rosenfeld SS, Houdusse A, Moores CA

PDB-5nd4:
Microtubule-bound MKLP2 motor domain in the presence of ADP.AlFx
Method: single particle / : Atherton J, Yu IM, Cook A, Muretta JM, Joseph AP, Major J, Sourigues Y, Clause J, Topf M, Rosenfeld SS, Houdusse A, Moores CA

PDB-5nd7:
Microtubule-bound MKLP2 motor domain in the presence of AMPPNP
Method: single particle / : Atherton J, Yu IM, Cook A, Muretta JM, Joseph AP, Major J, Sourigues Y, Clause J, Topf M, Rosenfeld SS, Houdusse A, Moores CA

PDB-5xs4:
Structure of Coxsackievirus A6 (CVA6) virus A-particle
Method: single particle / : Zheng QB, He MZ, Xu LF, Yu H, Li SW, Cheng T

PDB-5xs5:
Structure of Coxsackievirus A6 (CVA6) virus procapsid particle
Method: single particle / : Zheng QB, He MZ, Xu LF, Yu H, Cheng T, Li SW

PDB-5xs7:
Structure of Coxsackievirus A6 (CVA6) virus A-particle in complex with the neutralizing antibody fragment 1D5
Method: single particle / : Zheng QB, He MZ, Xu LF, Yu H, Li SW, Cheng T

PDB-5wc3:
SpoIIIAG
Method: single particle / : Zeytuni N, Hong C, Worrall LJ, Huang RK, Yu Z, Strynadka NCJ

PDB-5uzb:
Cryo-EM structure of the MAL TIR domain filament
Method: helical / : Ve T, Vajjhala PR, Hedger A, Croll T, DiMaio F, Horsefield S, Yu X, Lavrencic P, Hassan Z, Morgan GP, Mansell A, Mobli M, O'Carrol A, Chauvin B, Gambin Y, Sierecki E, Landsberg MJ, Stacey KJ, Egelman EH, Kobe B

PDB-5w7g:
An envelope of a filamentous hyperthermophilic virus carries lipids in a horseshoe conformation
Method: helical / : Kasson P, DiMaio F, Yu X, Lucas-Staat S, Krupovic M, Schouten S, Prangishvili D, Egelman E

PDB-5vku:
An atomic structure of the human cytomegalovirus (HCMV) capsid with its securing layer of pp150 tegument protein
Method: single particle / : Yu X, Jih J, Jiang J, Zhou H

PDB-5tx1:
Cryo-Electron microscopy structure of species-D human adenovirus 26
Method: single particle / : Reddy V, Yu X, Veesler D

PDB-5u0p:
Cryo-EM structure of the transcriptional Mediator
Method: single particle / : Tsai KL, Yu X, Gopalan S, Chao TC, Zhang Y, Florens L, Washburn MP, Murakami K, Conaway RC, Conaway JW, Asturias F

PDB-5u0s:
Cryo-EM structure of the Mediator-RNAPII complex
Method: single particle / : Tsai KL, Yu X, Gopalan S, Chao TC, Zhang Y, Florens L, Washburn MP, Murakami K, Conaway RC, Conaway JW, Asturias F

PDB-5jul:
Near atomic structure of the Dark apoptosome
Method: single particle / : Cheng TC, Akey IV, Yuan S, Yu Z, Ludtke SJ, Akey CW

PDB-5tcp:
Near-atomic resolution cryo-EM structure of the periplasmic domains of PrgH and PrgK
Method: single particle / : Worrall LJ, Hong C, Vuckovic M, Bergeron JRC, Huang RK, Yu Z, Strynadka NCJ

PDB-5tcq:
Near-atomic resolution cryo-EM structure of the Salmonella SPI-1 type III secretion injectisome secretin InvG
Method: single particle / : Worrall LJ, Hong C, Vuckovic M, Bergeron JRC, Huang RK, Yu Z, Strynadka NCJ

PDB-5tcr:
Atomic model of the Salmonella SPI-1 type III secretion injectisome basal body proteins InvG, PrgH, and PrgK
Method: single particle / : Worrall LJ, Hong C, Vuckovic M, Bergeron JRC, Huang RK, Yu Z, Strynadka NCJ

PDB-5t0c:
Structural basis for dynamic regulation of the human 26S proteasome
Method: single particle / : Chen S, Wu J, Lu Y, Ma YB, Lee BH, Yu Z, Ouyang Q, Finley D, Kirschner MW, Mao Y

PDB-5t0g:
Structural basis for dynamic regulation of the human 26S proteasome
Method: single particle / : Chen S, Wu J, Lu Y, Ma YB, Lee BH, Yu Z, Ouyang Q, Finley D, Kirschner MW, Mao Y

PDB-5t0h:
Structural basis for dynamic regulation of the human 26S proteasome
Method: single particle / : Chen S, Wu J, Lu Y, Ma YB, Lee BH, Yu Z, Ouyang Q, Finley D, Kirschner MW, Mao Y

PDB-5t0i:
Structural basis for dynamic regulation of the human 26S proteasome
Method: single particle / : Chen S, Wu J, Lu Y, Ma YB, Lee BH, Yu Z, Ouyang Q, Finley D, Kirschner MW, Mao Y

PDB-5t0j:
Structural basis for dynamic regulation of the human 26S proteasome
Method: single particle / : Chen S, Wu J, Lu Y, Ma YB, Lee BH, Yu Z, Ouyang Q, Finley D, Kirschner MW, Mao Y

PDB-5kua:
Cryo-EM reconstruction of Neisseria meningitidis Type IV pilus
Method: helical / : Kolappan S, Coureuil M, Yu X, Nassif X, Craig L, Egelman EH

PDB-5jb1:
Pseudo-atomic structure of Human Papillomavirus Type 59 L1 Virus-like Particle
Method: single particle / : Li ZH, Yan XD, Yu H, Zheng QB, Gu Y, Li SW

PDB-5adx:
CryoEM structure of dynactin complex at 4.0 angstrom resolution
Method: single particle / : Zhang K, Urnavicius L, Diamant AG, Motz C, Schlage MA, Yu M, Patel NA, Robinson CV, Carter AP

PDB-3jb6:
In situ structures of the segmented genome and RNA polymerase complex inside a dsRNA virus
Method: single particle / : Zhang X, Ding K, Yu XK, Chang W, Sun JC, Zhou ZH

PDB-3jb7:
In situ structures of the segmented genome and RNA polymerase complex inside a dsRNA virus
Method: single particle / : Zhang X, Ding K, Yu XK, Chang W, Sun JC, Zhou ZH

PDB-3jay:
Atomic model of transcribing cytoplasmic polyhedrosis virus
Method: single particle / : Yu XK, Jiang JS, Sun JC, Zhou ZH

PDB-3jaz:
Atomic model of cytoplasmic polyhedrosis virus with ATP
Method: single particle / : Yu XK, Jiang JS, Sun JC, Zhou ZH

PDB-3jb0:
Atomic model of cytoplasmic polyhedrosis virus with GTP
Method: single particle / : Yu XK, Jiang JS, Sun JC, Zhou ZH

PDB-3jb1:
Atomic model of cytoplasmic polyhedrosis virus with SAM
Method: single particle / : Yu XK, Jiang JS, Sun JC, Zhou ZH

PDB-3jb2:
Atomic model of cytoplasmic polyhedrosis virus with SAM and GTP
Method: single particle / : Yu XK, Jiang JS, Sun JC, Zhou ZH

PDB-3jb3:
Atomic model of cytoplasmic polyhedrosis virus with SAM, GTP and ATP
Method: single particle / : Yu XK, Jiang JS, Sun JC, Zhou ZH

PDB-5a2t:
The Molecular Basis for Flexibility in the Flexible Filamentous Plant Viruses
Method: helical / : DiMaio F, Chen CC, Yu X, Frenz B, Hsu YH, Lin NS, Egelman EH

PDB-3j9x:
A Virus that Infects a Hyperthermophile Encapsidates A-Form DNA
Method: helical / : DiMaio F, Yu X, Rensen E, Krupovic M, Prangishvili D, Egelman E

PDB-3j9q:
Atomic structures of a bactericidal contractile nanotube in its pre- and post-contraction states
Method: helical / : Ge P, Scholl D, Leiman PG, Yu X, Miller JF, Zhou ZH

PDB-3j9r:
Atomic structures of a bactericidal contractile nanotube in its pre- and post-contraction states
Method: helical / : Ge P, Scholl D, Leiman PG, Yu X, Miller JF, Zhou ZH

PDB-5afu:
Cryo-EM structure of dynein tail-dynactin-BICD2N complex
Method: single particle / : Urnavicius L, Zhang K, Diamant AG, Motz C, Schlager MA, Yu M, Patel NA, Robinson CV, Carter AP

PDB-3j89:
Structural Plasticity of Helical Nanotubes Based on Coiled-Coil Assemblies
Method: helical / : Egelman EH, Xu C, DiMaio F, Magnotti E, Modlin C, Yu X, Wright E, Baker D, Conticello VP

PDB-4uxo:
Conserved mechanisms of microtubule-stimulated ADP release, ATP binding, and force generation in transport kinesins
Method: single particle / : Atherton J, Farabella I, Yu IM, Rosenfeld SS, Houdusse A, Topf M, Moores C

PDB-4uxp:
Conserved mechanisms of microtubule-stimulated ADP release, ATP binding, and force generation in transport kinesins
Method: single particle / : Atherton J, Farabella I, Yu IM, Rosenfeld SS, Houdusse A, Topf M, Moores C

PDB-4uxr:
Conserved mechanisms of microtubule-stimulated ADP release, ATP binding, and force generation in transport kinesins
Method: single particle / : Atherton J, Farabella I, Yu IM, Rosenfeld SS, Houdusse A, Topf M, Moores C

PDB-4uxs:
Conserved mechanisms of microtubule-stimulated ADP release, ATP binding, and force generation in transport kinesins
Method: single particle / : Atherton J, Farabella I, Yu IM, Rosenfeld SS, Houdusse A, Topf M, Moores C

PDB-4uxt:
Conserved mechanisms of microtubule-stimulated ADP release, ATP binding, and force generation in transport kinesins
Method: single particle / : Atherton J, Farabella I, Yu IM, Rosenfeld SS, Houdusse A, Topf M, Moores C

PDB-4uxy:
Conserved mechanisms of microtubule-stimulated ADP release, ATP binding, and force generation in transport kinesins
Method: single particle / : Atherton J, Farabella I, Yu IM, Rosenfeld SS, Houdusse A, Topf M, Moores C

PDB-4uy0:
Conserved mechanisms of microtubule-stimulated ADP release, ATP binding, and force generation in transport kinesins
Method: single particle / : Atherton J, Farabella I, Yu IM, Rosenfeld SS, Houdusse A, Topf M, Moores C

PDB-4v5m:
tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)
Method: single particle / : Ratje AH, Loerke J, Mikolajka A, Bruenner M, Hildebrand PW, Starosta AL, Doenhoefer A, Connell SR, Fucini P, Mielke T, Whitford PC, Onuchic JN, Yu Y, Sanbonmatsu KY, Hartmann RK, Penczek PA, Wilson DN, Spahn CMT

PDB-4v5n:
tRNA translocation on the 70S ribosome: the post- translocational translocation intermediate TI(POST)
Method: single particle / : Ratje AH, Loerke J, Mikolajka A, Bruenner M, Hildebrand PW, Starosta AL, Doenhoefer A, Connell SR, Fucini P, Mielke T, Whitford PC, Onuchic JN, Yu Y, Sanbonmatsu KY, Hartmann RK, Penczek PA, Wilson DN, Spahn CMT

PDB-3j6c:
Cryo-EM structure of MAVS CARD filament
Method: helical / : Xu H, He X, Zheng H, Huang LJ, Hou F, Yu Z, de la Cruz MJ, Borkowski B, Zhang X, Chen ZJ, Jiang QX

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Oct 4, 2017. Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

  • Jacques Dubochet (University of Lausanne, Switzerland) is a pioneer of ice-embedding method of EM specimen (as known as cryo-EM), Most of 3DEM structures in EMDB and PDB are obtained using his method.
  • Joachim Frank (Columbia University, New York, USA) is a pioneer of single particle reconstruction, which is the most used reconstruction method for 3DEM structures in EMDB and EM entries in PDB. And also, he is a develper of Spider, which is one of the most famous software in this field, and is used for some EM Navigor data (e.g. map projection/slice images).
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